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PIE

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PO11sing1.61Å1.55Å
PO12doub1.55Å1.57Å
PO13sing1.54Å1.45Å
PO14sing1.61Å1.31Å
O11C1sing1.43Å1.45Å
O14C5'sing1.43Å1.48Å
C1C2sing1.53Å1.57Å
C1H11sing1.09Å1.10Å
C1H12sing1.09Å1.10Å
C2C3sing1.53Å1.54Å
C2O21sing1.45Å1.43Å
C2H21sing1.09Å1.10Å
C3O31sing1.45Å1.39Å
C3H31sing1.09Å1.10Å
C3H32sing1.09Å1.10Å
O31C31sing1.34Å1.33Å
O32C31doub1.21Å1.19Å
C31C32sing1.51Å1.50Å
C32C33sing1.53Å1.53Å
C32H321sing1.09Å1.10Å
C32H322sing1.09Å1.10Å
C33C34sing1.53Å1.53Å
C33H331sing1.09Å1.10Å
C33H332sing1.09Å1.10Å
C34C35sing1.53Å1.51Å
C34H341sing1.09Å1.10Å
C34H342sing1.09Å1.10Å
C35C36sing1.53Å1.51Å
C35H351sing1.09Å1.10Å
C35H352sing1.09Å1.10Å
C36C37sing1.53Å1.52Å
C36H361sing1.09Å1.10Å
C36H362sing1.09Å1.10Å
C37C38sing1.53Å1.42Å
C37H371sing1.09Å1.10Å
C37H372sing1.09Å1.10Å
C38C39sing1.53Å1.57Å
C38H381sing1.09Å1.10Å
C38H382sing1.09Å1.10Å
C39C40sing1.53Å1.55Å
C39H391sing1.09Å1.10Å
C39H392sing1.09Å1.10Å
C40C41sing1.53Å1.54Å
C40H401sing1.09Å1.10Å
C40H402sing1.09Å1.10Å
C41C42sing1.53Å1.54Å
C41H411sing1.09Å1.10Å
C41H412sing1.09Å1.10Å
C42C43sing1.53Å53.13Å
C42H421sing1.09Å1.10Å
C42H422sing1.09Å1.10Å
O21C21sing1.34Å1.34Å
O22C21doub1.21Å1.16Å
C21C22sing1.51Å1.50Å
C22C23sing1.53Å1.54Å
C22H221sing1.09Å1.10Å
C22H222sing1.09Å1.10Å
C23C24sing1.53Å1.53Å
C23H231sing1.09Å1.10Å
C23H232sing1.09Å1.10Å
C24C25sing1.53Å1.52Å
C24H241sing1.09Å1.10Å
C24H242sing1.09Å1.10Å
C25C26sing1.53Å1.54Å
C25H251sing1.09Å1.10Å
C25H252sing1.09Å1.10Å
C26C27sing1.53Å1.54Å
C26H261sing1.09Å1.10Å
C26H262sing1.09Å1.10Å
C27C28sing1.53Å1.55Å
C27H271sing1.09Å1.10Å
C27H272sing1.09Å1.10Å
C28C29sing1.51Å1.55Å
C28H281sing1.09Å1.10Å
C28H282sing1.09Å1.10Å
C29C47doub1.31Å1.55Å
C29H291sing1.08Å1.08Å
C47C48sing1.51Å1.55Å
C47H471sing1.08Å1.08Å
C48C49sing1.53Å1.55Å
C48H481sing1.09Å1.10Å
C48H482sing1.09Å1.10Å
C49C50sing1.53Å1.55Å
C49H491sing1.09Å1.10Å
C49H492sing1.09Å1.10Å
C50C51sing1.53Å1.54Å
C50H501sing1.09Å1.10Å
C50H502sing1.09Å1.10Å
C51C52sing1.53Å48.68Å
C51H511sing1.09Å1.10Å
C51H512sing1.09Å1.10Å
C1'C2'sing1.53Å1.52Å
C1'C6'sing1.53Å1.60Å
C1'O1'sing1.43Å1.44Å
C1'H1'1sing1.09Å1.10Å
C2'C3'sing1.53Å1.56Å
C2'O2'sing1.43Å1.43Å
C2'H2'1sing1.09Å1.10Å
C3'C4'sing1.53Å1.56Å
C3'O3'sing1.43Å1.43Å
C3'H3'1sing1.09Å1.10Å
C4'C5'sing1.53Å1.61Å
C4'O4'sing1.43Å1.43Å
C4'H4'1sing1.09Å1.10Å
C5'C6'sing1.53Å1.63Å
C5'H5'1sing1.09Å1.10Å
C6'O6'sing1.43Å1.41Å
C6'H6'1sing1.09Å1.10Å
O1'HO11sing0.97Å0.95Å
O2'HO21sing0.97Å0.95Å
O3'HO31sing0.97Å0.95Å
O4'HO41sing0.97Å0.95Å
O6'HO61sing0.97Å0.95Å
C52C53sing1.53Å0.00Å
C52H521sing1.09Å0.00Å
C52H522sing1.09Å0.00Å
C53C54sing1.53Å0.00Å
C53H531sing1.09Å0.00Å
C53H532sing1.09Å0.00Å
C54C55sing1.53Å0.00Å
C54H541sing1.09Å0.00Å
C54H542sing1.09Å0.00Å
C55H551sing1.09Å0.00Å
C55H552sing1.09Å0.00Å
C55H553sing1.09Å0.00Å
C43C44sing1.53Å0.00Å
C43H431sing1.09Å0.00Å
C43H432sing1.09Å0.00Å
C44C45sing1.53Å0.00Å
C44H441sing1.09Å0.00Å
C44H442sing1.09Å0.00Å
C45C46sing1.53Å0.00Å
C45H451sing1.09Å0.00Å
C45H452sing1.09Å0.00Å
C46H461sing1.09Å0.00Å
C46H462sing1.09Å0.00Å
C46H453sing1.09Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O11PO12107.8°109.5°
O11PO13105.7°109.5°
O11PO14132.3°109.5°
PO11C1128.5°123.0°
O12PO13102.4°109.5°
O12PO14102.2°109.5°
O13PO14103.0°109.5°
PO14C5'146.4°122.9°
O11C1C2104.8°109.5°
O11C1H11111.1°109.4°
O11C1H12112.1°109.5°
O14C5'C4'111.4°109.4°
O14C5'C6'112.6°109.5°
O14C5'H5'1104.6°109.5°
C2C1H11111.1°109.5°
C2C1H12112.1°109.5°
C1C2C3103.5°109.5°
C1C2O21113.1°109.5°
C1C2H21109.4°109.5°
H11C1H12105.9°109.5°
C3C2O21103.9°109.5°
C3C2H21117.9°109.5°
C2C3O31103.8°109.5°
C2C3H31111.4°109.5°
C2C3H32112.6°109.5°
O21C2H21109.0°109.5°
C2O21C21112.3°117.0°
O31C3H31111.4°109.4°
O31C3H32112.6°109.4°
C3O31C31116.3°117.0°
H31C3H32105.2°109.5°
O31C31O32129.1°120.0°
O31C31C32105.8°120.0°
O32C31C32125.1°120.0°
C31C32C33114.5°109.5°
C31C32H321107.8°109.5°
C31C32H322106.6°109.5°
C33C32H321107.8°109.5°
C33C32H322106.7°109.4°
C32C33C34108.8°109.5°
C32C33H331109.7°109.5°
C32C33H332109.8°109.5°
H321C32H322113.6°109.4°
C34C33H331109.7°109.5°
C34C33H332109.8°109.4°
C33C34C35111.1°109.5°
C33C34H341108.9°109.5°
C33C34H342108.5°109.5°
H331C33H332109.0°109.4°
C35C34H341108.9°109.5°
C35C34H342108.6°109.5°
C34C35C36109.2°109.4°
C34C35H351109.6°109.5°
C34C35H352109.6°109.5°
H341C34H342110.8°109.4°
C36C35H351109.6°109.5°
C36C35H352109.7°109.4°
C35C36C37111.7°109.4°
C35C36H361108.8°109.5°
C35C36H362108.2°109.5°
H351C35H352109.3°109.5°
C37C36H361108.7°109.5°
C37C36H362108.2°109.5°
C36C37C3896.2°109.4°
C36C37H371114.2°109.5°
C36C37H372116.8°109.5°
H361C36H362111.2°109.5°
C38C37H371114.2°109.5°
C38C37H372116.8°109.5°
C37C38C39126.9°109.4°
C37C38H381104.0°109.5°
C37C38H382100.0°109.5°
H371C37H37299.7°109.5°
C39C38H381104.0°109.5°
C39C38H38299.9°109.5°
C38C39C40114.2°109.5°
C38C39H391107.9°109.5°
C38C39H392106.8°109.5°
H381C38H382124.4°109.5°
C40C39H391107.9°109.5°
C40C39H392106.8°109.5°
C39C40C41111.1°109.5°
C39C40H401108.9°109.4°
C39C40H402108.6°109.5°
H391C39H392113.3°109.4°
C41C40H401108.9°109.5°
C41C40H402108.6°109.5°
C40C41C42111.9°109.5°
C40C41H411108.7°109.5°
C40C41H412108.2°109.5°
H401C40H402110.7°109.5°
C42C41H411108.7°109.5°
C42C41H412108.1°109.4°
C41C42C4381.3°109.5°
C41C42H421120.2°109.5°
C41C42H422124.8°109.4°
H411C41H412111.3°109.5°
C43C42H421120.2°109.5°
C43C42H422124.8°109.5°
C42C43C4490.0°109.5°
C42C43H43190.0°109.5°
C42C43H43290.0°109.5°
H421C42H42289.7°109.4°
O21C21O22126.1°120.0°
O21C21C22111.9°120.0°
O22C21C22122.0°120.0°
C21C22C23115.2°109.5°
C21C22H221107.6°109.5°
C21C22H222106.3°109.5°
C23C22H221107.6°109.4°
C23C22H222106.3°109.5°
C22C23C24111.3°109.4°
C22C23H231108.9°109.4°
C22C23H232108.5°109.5°
H221C22H222114.0°109.5°
C24C23H231108.9°109.5°
C24C23H232108.5°109.5°
C23C24C25112.8°109.4°
C23C24H241108.4°109.5°
C23C24H242107.6°109.5°
H231C23H232110.9°109.5°
C25C24H241108.4°109.5°
C25C24H242107.6°109.5°
C24C25C26109.8°109.4°
C24C25H251109.3°109.5°
C24C25H252109.3°109.5°
H241C24H242112.1°109.5°
C26C25H251109.4°109.5°
C26C25H252109.3°109.4°
C25C26C27109.3°109.4°
C25C26H261109.6°109.5°
C25C26H262109.6°109.5°
H251C25H252109.8°109.5°
C27C26H261109.5°109.5°
C27C26H262109.6°109.4°
C26C27C28112.8°109.5°
C26C27H271108.4°109.5°
C26C27H272107.6°109.4°
H261C26H262109.3°109.5°
C28C27H271108.3°109.5°
C28C27H272107.6°109.5°
C27C28C29109.4°109.5°
C27C28H281109.5°109.5°
C27C28H282109.5°109.5°
H271C27H272112.1°109.5°
C29C28H281109.5°109.5°
C29C28H282109.5°109.4°
C28C29C47114.0°120.0°
C28C29H291123.0°120.0°
H281C28H282109.4°109.5°
C47C29H291123.0°120.1°
C29C47C48108.0°120.0°
C29C47H471126.0°120.0°
C48C47H471126.0°120.0°
C47C48C49110.4°109.5°
C47C48H481109.2°109.5°
C47C48H482109.0°109.4°
C49C48H481109.2°109.5°
C49C48H482108.9°109.5°
C48C49C50107.9°109.5°
C48C49H491110.0°109.5°
C48C49H492110.3°109.5°
H481C48H482110.2°109.5°
C50C49H491110.0°109.5°
C50C49H492110.4°109.4°
C49C50C51112.9°109.5°
C49C50H501108.3°109.5°
C49C50H502107.6°109.4°
H491C49H492108.2°109.5°
C51C50H501108.3°109.5°
C51C50H502107.5°109.5°
C50C51C52123.6°109.5°
C50C51H511105.0°109.5°
C50C51H512101.7°109.5°
H501C50H502112.2°109.5°
C52C51H511105.0°109.5°
C52C51H512101.7°109.4°
C51C52C5390.0°109.5°
C51C52H52190.0°109.5°
C51C52H52290.0°109.4°
H511C51H512121.4°109.4°
C2'C1'C6'108.2°109.5°
C2'C1'O1'108.6°109.4°
C2'C1'H1'1111.0°109.5°
C1'C2'C3'110.9°109.4°
C1'C2'O2'110.1°109.5°
C1'C2'H2'1107.8°109.5°
C6'C1'O1'109.8°109.5°
C6'C1'H1'1109.8°109.5°
C1'C6'C5'111.2°109.5°
C1'C6'O6'110.2°109.5°
C1'C6'H6'1106.9°109.5°
O1'C1'H1'1109.5°109.5°
C1'O1'HO11109.5°114.0°
C3'C2'O2'108.5°109.5°
C3'C2'H2'1109.3°109.4°
C2'C3'C4'111.6°109.5°
C2'C3'O3'108.6°109.4°
C2'C3'H3'1108.6°109.5°
O2'C2'H2'1110.2°109.6°
C2'O2'HO21109.5°114.0°
C4'C3'O3'109.5°109.5°
C4'C3'H3'1107.7°109.5°
C3'C4'C5'111.4°109.4°
C3'C4'O4'108.7°109.5°
C3'C4'H4'1108.5°109.5°
O3'C3'H3'1110.7°109.4°
C3'O3'HO31109.5°114.0°
C5'C4'O4'108.8°109.5°
C5'C4'H4'1108.4°109.5°
C4'C5'C6'104.7°109.4°
C4'C5'H5'1112.5°109.5°
O4'C4'H4'1111.1°109.5°
C4'O4'HO41109.5°114.0°
C6'C5'H5'1111.3°109.5°
C5'C6'O6'106.2°109.5°
C5'C6'H6'1110.8°109.5°
O6'C6'H6'1111.8°109.5°
C6'O6'HO61109.5°114.0°
C53C52H52190.0°109.5°
C53C52H52290.0°109.4°
C52C53C5490.0°109.5°
C52C53H53190.0°109.5°
C52C53H53290.0°109.5°
H521C52H52290.0°109.5°
C54C53H53190.0°109.5°
C54C53H53290.0°109.4°
C53C54C5590.0°109.5°
C53C54H54190.0°109.5°
C53C54H54290.0°109.5°
H531C53H53290.0°109.5°
C55C54H54190.0°109.4°
C55C54H54290.0°109.5°
C54C55H55190.0°109.5°
C54C55H55290.0°109.5°
C54C55H55390.0°109.5°
H541C54H54290.0°109.4°
H551C55H55290.0°109.5°
H551C55H55390.0°109.5°
H552C55H55390.0°109.4°
C44C43H43190.0°109.5°
C44C43H43290.0°109.4°
C43C44C4590.0°109.5°
C43C44H44190.0°109.5°
C43C44H44290.0°109.5°
H431C43H43290.0°109.4°
C45C44H44190.0°109.5°
C45C44H44290.0°109.5°
C44C45C4690.0°109.4°
C44C45H45190.0°109.5°
C44C45H45290.0°109.5°
H441C44H44290.0°109.4°
C46C45H45190.0°109.5°
C46C45H45290.0°109.4°
C45C46H46190.0°109.5°
C45C46H46290.0°109.5°
C45C46H45390.0°109.4°
H451C45H45290.0°109.5°
H461C46H46290.0°109.4°
H461C46H45390.0°109.5°
H462C46H45390.0°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O11PO12O13111.2°120.0°
O11PO12O14142.3°120.0°
O11PO13O14141.5°120.0°
O11PO14C5'72.5°175.0°
PO11C1C2151.1°180.0°
PO11C1H1131.1°60.0°
PO11C1H1287.1°60.0°
O12PO13O14105.8°120.0°
O12PO11C111.4°55.0°
O12PO14C5'55.6°55.0°
O13PO11C1120.3°65.0°
O13PO14C5'161.6°65.0°
O14PO11C1114.8°175.0°
PO14C5'C4'32.5°120.0°
PO14C5'C6'149.7°120.0°
PO14C5'H5'189.3°0.0°
O11C1C2H11120.0°120.0°
O11C1C2H12121.8°120.0°
O11C1H11H12121.9°120.0°
O11C1C2C364.6°55.0°
O11C1C2O2147.2°65.0°
O11C1C2H21169.0°175.0°
O14C5'C6'C1'179.1°180.0°
O14C5'C4'C3'179.4°180.0°
O14C5'C4'C6'121.9°119.9°
O14C5'C4'H5'1117.1°120.0°
O14C5'C4'O4'59.6°60.0°
O14C5'C4'H4'161.3°60.1°
O14C5'C6'H5'1117.1°120.1°
O14C5'C6'O6'59.2°60.1°
O14C5'C6'H6'162.3°59.9°
C2C1H11H12121.9°120.0°
C1C2C3O21118.4°120.0°
C1C2C3H21120.9°120.0°
C1C2O21H21122.0°120.0°
C1C2C3O31179.7°55.0°
C1C2C3H3160.3°175.0°
C1C2C3H3257.6°64.9°
C1C2O21C21132.5°90.0°
H11C1C2C3175.4°175.0°
H11C1C2O2172.8°55.0°
H11C1C2H2149.0°65.0°
H12C1C2C357.2°65.0°
H12C1C2O21169.0°175.0°
H12C1C2H2169.3°55.0°
C3C2O21H21126.5°120.0°
C2C3O31H31120.0°120.0°
C2C3O31H32122.1°120.0°
C2C3H31H32122.3°120.1°
C2C3O31C31179.1°180.0°
C3C2O21C21116.0°150.0°
O21C2C3O3161.3°65.0°
O21C2C3H31178.7°55.0°
O21C2C3H3260.8°175.0°
C2O21C21O2254.1°0.0°
C2O21C21C22126.5°180.0°
H21C2C3O3159.4°175.0°
H21C2C3H3160.6°65.0°
H21C2C3H32178.5°55.1°
H21C2O21C2110.5°30.0°
O31C3H31H32122.3°119.9°
C3O31C31O320.2°0.0°
C3O31C31C32179.9°180.0°
H31C3O31C3160.9°60.0°
H32C3O31C3157.0°60.0°
O31C31O32C32179.6°180.0°
O31C31C32C33179.4°180.0°
O31C31C32H32159.4°60.0°
O31C31C32H32262.8°60.0°
O32C31C32C330.3°0.0°
O32C31C32H321120.3°120.0°
O32C31C32H322117.5°120.0°
C31C32C33H321120.0°120.0°
C31C32C33H322117.7°120.0°
C31C32H321H322117.9°120.0°
C31C32C33C34108.8°180.0°
C31C32C33H331131.2°60.0°
C31C32C33H33211.4°60.0°
C33C32H321H322117.9°119.9°
C32C33C34H331120.0°120.0°
C32C33C34H332120.2°120.0°
C32C33H331H332120.3°120.0°
C32C33C34C35122.1°180.0°
C32C33C34H341118.0°60.0°
C32C33C34H3422.8°60.0°
H321C32C33C3411.1°59.9°
H321C32C33H331108.9°180.0°
H321C32C33H332131.4°60.0°
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H431C43C44H44290.0°60.0°
H432C43C44C4590.0°60.0°
H432C43C44H44190.0°60.0°
H432C43C44H44290.0°180.0°
C45C44H441H44290.0°120.0°
C44C45C46H45190.0°120.0°
C44C45C46H45290.0°120.0°
C44C45H451H45290.0°120.1°
C44C45C46H46190.0°60.0°
C44C45C46H46290.0°60.0°
C44C45C46H45390.0°180.0°
H441C44C45C4690.0°60.0°
H441C44C45H45190.0°179.9°
H441C44C45H45290.0°60.0°
H442C44C45C4690.0°60.0°
H442C44C45H45190.0°60.0°
H442C44C45H45290.0°179.9°
C46C45H451H45290.0°120.0°
C45C46H461H46290.0°120.0°
C45C46H461H45390.0°120.0°
C45C46H462H45390.0°120.0°
H451C45C46H46190.0°180.0°
H451C45C46H46290.0°60.0°
H451C45C46H45390.0°60.0°
H452C45C46H46190.0°60.0°
H452C45C46H46290.0°180.0°
H452C45C46H45390.0°60.0°
H461C46H462H45390.0°120.0°

227344

PDB entries from 2024-11-13

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