PIA
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N1 | CA1 | sing | 1.47Å | 1.46Å | |
N1 | H | sing | 1.01Å | 1.00Å | |
N1 | H2 | sing | 1.01Å | 1.00Å | |
CA1 | CB1 | sing | 1.53Å | 1.55Å | |
CA1 | C1 | sing | 1.51Å | 1.53Å | |
CA1 | HA1 | sing | 1.09Å | 1.10Å | |
CB1 | HB11 | sing | 1.09Å | 1.10Å | |
CB1 | HB12 | sing | 1.09Å | 1.10Å | |
CB1 | HB13 | sing | 1.09Å | 1.10Å | |
C1 | N2 | doub | 1.30Å | 1.32Å | |
C1 | N3 | sing | 1.37Å | 1.37Å | |
N2 | CA2 | sing | 1.37Å | 1.33Å | |
N3 | C2 | sing | 1.35Å | 1.33Å | |
N3 | CA3 | sing | 1.47Å | 1.44Å | |
C2 | O2 | doub | 1.22Å | 1.24Å | |
C2 | CA2 | sing | 1.47Å | 1.38Å | |
CA2 | CB2 | doub | 1.38Å | 1.53Å | |
CA3 | C3 | sing | 1.51Å | 1.51Å | |
CA3 | HA31 | sing | 1.09Å | 1.10Å | |
CA3 | HA32 | sing | 1.09Å | 1.10Å | |
C3 | O3 | doub | 1.21Å | 1.23Å | |
C3 | OXT | sing | 1.34Å | 1.34Å | |
CB2 | CG2 | sing | 1.46Å | 1.53Å | |
CB2 | HB2 | sing | 1.08Å | 1.08Å | |
CG2 | CD1 | doub | 1.40Å | 1.36Å | Aromatic |
CG2 | CD2 | sing | 1.40Å | 1.36Å | Aromatic |
CD1 | CE1 | sing | 1.37Å | 1.39Å | Aromatic |
CD1 | HD1 | sing | 1.08Å | 1.08Å | |
CD2 | CE2 | doub | 1.37Å | 1.40Å | Aromatic |
CD2 | HD2 | sing | 1.08Å | 1.08Å | |
CE1 | CZ | doub | 1.39Å | 1.39Å | Aromatic |
CE1 | HE1 | sing | 1.08Å | 1.08Å | |
CE2 | CZ | sing | 1.39Å | 1.39Å | Aromatic |
CE2 | HE2 | sing | 1.08Å | 1.08Å | |
CZ | OH | sing | 1.36Å | 1.37Å | |
OH | HH | sing | 0.97Å | 0.95Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CA1 | N1 | H | 109.5° | 111.0° |
CA1 | N1 | H2 | 109.5° | 111.0° |
N1 | CA1 | CB1 | 110.5° | 109.5° |
N1 | CA1 | C1 | 105.1° | 109.5° |
N1 | CA1 | HA1 | 107.6° | 109.5° |
H | N1 | H2 | 109.4° | 111.0° |
CB1 | CA1 | C1 | 119.8° | 109.5° |
CB1 | CA1 | HA1 | 106.6° | 109.4° |
CA1 | CB1 | HB11 | 109.5° | 109.4° |
CA1 | CB1 | HB12 | 109.5° | 109.5° |
CA1 | CB1 | HB13 | 109.5° | 109.5° |
C1 | CA1 | HA1 | 106.8° | 109.4° |
CA1 | C1 | N2 | 122.0° | 124.3° |
CA1 | C1 | N3 | 125.0° | 124.4° |
HB11 | CB1 | HB12 | 109.5° | 109.4° |
HB11 | CB1 | HB13 | 109.5° | 109.5° |
HB12 | CB1 | HB13 | 109.5° | 109.5° |
N2 | C1 | N3 | 112.4° | 111.3° |
C1 | N2 | CA2 | 97.3° | 109.3° |
C1 | N3 | C2 | 111.8° | 108.4° |
C1 | N3 | CA3 | 127.8° | 125.8° |
N2 | CA2 | C2 | 122.2° | 105.7° |
N2 | CA2 | CB2 | 132.3° | 127.1° |
C2 | N3 | CA3 | 120.4° | 125.8° |
N3 | C2 | O2 | 118.1° | 127.4° |
N3 | C2 | CA2 | 96.1° | 105.3° |
N3 | CA3 | C3 | 113.7° | 109.5° |
N3 | CA3 | HA31 | 108.4° | 109.4° |
N3 | CA3 | HA32 | 108.4° | 109.5° |
O2 | C2 | CA2 | 145.7° | 127.4° |
C2 | CA2 | CB2 | 105.3° | 127.2° |
CA2 | CB2 | CG2 | 124.4° | 120.0° |
CA2 | CB2 | HB2 | 117.8° | 120.0° |
C3 | CA3 | HA31 | 108.4° | 109.5° |
C3 | CA3 | HA32 | 108.4° | 109.5° |
CA3 | C3 | O3 | 119.3° | 120.0° |
CA3 | C3 | OXT | 116.5° | 120.0° |
HA31 | CA3 | HA32 | 109.5° | 109.5° |
O3 | C3 | OXT | 123.6° | 120.0° |
C3 | OXT | HXT | 109.5° | 117.0° |
CG2 | CB2 | HB2 | 117.8° | 120.0° |
CB2 | CG2 | CD1 | 118.2° | 120.2° |
CB2 | CG2 | CD2 | 115.1° | 120.1° |
CD1 | CG2 | CD2 | 126.4° | 119.7° |
CG2 | CD1 | CE1 | 116.3° | 119.9° |
CG2 | CD1 | HD1 | 121.8° | 120.0° |
CG2 | CD2 | CE2 | 117.2° | 119.9° |
CG2 | CD2 | HD2 | 121.4° | 120.1° |
CE1 | CD1 | HD1 | 121.8° | 120.1° |
CD1 | CE1 | CZ | 120.2° | 120.1° |
CD1 | CE1 | HE1 | 119.9° | 119.9° |
CE2 | CD2 | HD2 | 121.4° | 120.0° |
CD2 | CE2 | CZ | 118.7° | 120.1° |
CD2 | CE2 | HE2 | 120.6° | 120.0° |
CZ | CE1 | HE1 | 119.9° | 120.0° |
CE1 | CZ | CE2 | 121.1° | 120.3° |
CE1 | CZ | OH | 118.8° | 119.8° |
CZ | CE2 | HE2 | 120.7° | 119.9° |
CE2 | CZ | OH | 120.2° | 119.9° |
CZ | OH | HH | 109.5° | 114.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CA1 | N1 | H | H2 | 120.0° | 124.0° |
N1 | CA1 | CB1 | C1 | 122.2° | 120.1° |
N1 | CA1 | CB1 | HA1 | 116.6° | 120.0° |
N1 | CA1 | C1 | HA1 | 114.1° | 120.0° |
N1 | CA1 | CB1 | HB11 | 180.0° | 60.0° |
N1 | CA1 | CB1 | HB12 | 60.0° | 180.0° |
N1 | CA1 | CB1 | HB13 | 60.0° | 59.9° |
N1 | CA1 | C1 | N2 | 103.1° | 35.0° |
N1 | CA1 | C1 | N3 | 67.1° | 144.7° |
H | N1 | CA1 | CB1 | 180.0° | 64.0° |
H | N1 | CA1 | C1 | 49.5° | 56.1° |
H | N1 | CA1 | HA1 | 64.1° | 176.1° |
H2 | N1 | CA1 | CB1 | 60.0° | 60.0° |
H2 | N1 | CA1 | C1 | 70.5° | 180.0° |
H2 | N1 | CA1 | HA1 | 175.9° | 60.0° |
CB1 | CA1 | C1 | HA1 | 121.1° | 119.9° |
CA1 | CB1 | HB11 | HB12 | 120.0° | 120.0° |
CA1 | CB1 | HB11 | HB13 | 120.0° | 120.0° |
CA1 | CB1 | HB12 | HB13 | 120.0° | 120.0° |
CB1 | CA1 | C1 | N2 | 21.8° | 85.1° |
CB1 | CA1 | C1 | N3 | 168.1° | 95.2° |
C1 | CA1 | CB1 | HB11 | 57.8° | 60.0° |
C1 | CA1 | CB1 | HB12 | 177.8° | 59.9° |
C1 | CA1 | CB1 | HB13 | 62.2° | 180.0° |
CA1 | C1 | N2 | N3 | 171.3° | 179.7° |
CA1 | C1 | N2 | CA2 | 172.1° | 180.0° |
CA1 | C1 | N3 | C2 | 174.3° | 180.0° |
CA1 | C1 | N3 | CA3 | 4.4° | 0.0° |
HA1 | CA1 | CB1 | HB11 | 63.4° | 179.9° |
HA1 | CA1 | CB1 | HB12 | 56.6° | 60.0° |
HA1 | CA1 | CB1 | HB13 | 176.6° | 60.1° |
HA1 | CA1 | C1 | N2 | 142.9° | 155.0° |
HA1 | CA1 | C1 | N3 | 47.0° | 24.7° |
HB11 | CB1 | HB12 | HB13 | 120.0° | 120.0° |
N2 | C1 | N3 | C2 | 3.4° | 0.2° |
N2 | C1 | N3 | CA3 | 175.4° | 179.7° |
C1 | N2 | CA2 | C2 | 2.0° | 0.2° |
C1 | N2 | CA2 | CB2 | 177.2° | 180.0° |
N3 | C1 | N2 | CA2 | 0.8° | 0.2° |
C1 | N3 | C2 | CA3 | 178.9° | 180.0° |
C1 | N3 | C2 | O2 | 174.6° | 180.0° |
C1 | N3 | C2 | CA2 | 3.8° | 0.1° |
C1 | N3 | CA3 | C3 | 79.7° | 90.0° |
C1 | N3 | CA3 | HA31 | 159.7° | 150.0° |
C1 | N3 | CA3 | HA32 | 40.9° | 30.0° |
N2 | CA2 | C2 | N3 | 3.9° | 0.0° |
N2 | CA2 | C2 | O2 | 173.7° | 179.9° |
N2 | CA2 | C2 | CB2 | 176.2° | 179.9° |
N2 | CA2 | CB2 | CG2 | 7.3° | 5.2° |
N2 | CA2 | CB2 | HB2 | 172.7° | 174.8° |
N3 | C2 | O2 | CA2 | 177.3° | 179.9° |
N3 | C2 | CA2 | CB2 | 179.9° | 179.9° |
C2 | N3 | CA3 | C3 | 101.6° | 90.1° |
C2 | N3 | CA3 | HA31 | 19.0° | 30.0° |
C2 | N3 | CA3 | HA32 | 137.7° | 149.9° |
CA3 | N3 | C2 | O2 | 6.5° | 0.0° |
CA3 | N3 | C2 | CA2 | 175.0° | 179.8° |
N3 | CA3 | C3 | HA31 | 120.6° | 120.0° |
N3 | CA3 | C3 | HA32 | 120.6° | 120.0° |
N3 | CA3 | HA31 | HA32 | 118.1° | 120.0° |
N3 | CA3 | C3 | O3 | 179.4° | 0.0° |
N3 | CA3 | C3 | OXT | 9.2° | 180.0° |
O2 | C2 | CA2 | CB2 | 2.5° | 0.0° |
C2 | CA2 | CB2 | CG2 | 177.0° | 175.0° |
C2 | CA2 | CB2 | HB2 | 3.0° | 5.0° |
CA2 | CB2 | CG2 | HB2 | 180.0° | 180.0° |
CA2 | CB2 | CG2 | CD1 | 4.2° | 6.0° |
CA2 | CB2 | CG2 | CD2 | 179.2° | 174.3° |
C3 | CA3 | HA31 | HA32 | 118.1° | 120.0° |
CA3 | C3 | O3 | OXT | 170.8° | 179.9° |
CA3 | C3 | OXT | HXT | 171.0° | 180.0° |
HA31 | CA3 | C3 | O3 | 58.8° | 119.9° |
HA31 | CA3 | C3 | OXT | 129.8° | 60.0° |
HA32 | CA3 | C3 | O3 | 60.0° | 120.0° |
HA32 | CA3 | C3 | OXT | 111.4° | 60.1° |
O3 | C3 | OXT | HXT | 0.0° | 0.1° |
CB2 | CG2 | CD1 | CD2 | 174.4° | 179.7° |
CB2 | CG2 | CD1 | CE1 | 174.2° | 180.0° |
CB2 | CG2 | CD1 | HD1 | 5.8° | 0.1° |
CB2 | CG2 | CD2 | CE2 | 174.5° | 180.0° |
CB2 | CG2 | CD2 | HD2 | 5.5° | 0.0° |
HB2 | CB2 | CG2 | CD1 | 175.8° | 174.0° |
HB2 | CB2 | CG2 | CD2 | 0.8° | 5.7° |
CG2 | CD1 | CE1 | HD1 | 180.0° | 180.0° |
CD1 | CG2 | CD2 | CE2 | 0.0° | 0.3° |
CD1 | CG2 | CD2 | HD2 | 180.0° | 179.7° |
CG2 | CD1 | CE1 | CZ | 0.2° | 0.0° |
CG2 | CD1 | CE1 | HE1 | 179.8° | 180.0° |
CD2 | CG2 | CD1 | CE1 | 0.2° | 0.3° |
CD2 | CG2 | CD1 | HD1 | 179.8° | 179.7° |
CG2 | CD2 | CE2 | HD2 | 180.0° | 180.0° |
CG2 | CD2 | CE2 | CZ | 0.1° | 0.0° |
CG2 | CD2 | CE2 | HE2 | 179.8° | 180.0° |
CD1 | CE1 | CZ | HE1 | 180.0° | 180.0° |
CD1 | CE1 | CZ | CE2 | 0.0° | 0.3° |
CD1 | CE1 | CZ | OH | 179.5° | 180.0° |
HD1 | CD1 | CE1 | CZ | 179.8° | 180.0° |
HD1 | CD1 | CE1 | HE1 | 0.2° | 0.0° |
CD2 | CE2 | CZ | CE1 | 0.1° | 0.3° |
CD2 | CE2 | CZ | HE2 | 180.0° | 180.0° |
CD2 | CE2 | CZ | OH | 179.7° | 180.0° |
HD2 | CD2 | CE2 | CZ | 179.8° | 180.0° |
HD2 | CD2 | CE2 | HE2 | 0.2° | 0.0° |
CE1 | CZ | CE2 | OH | 179.5° | 179.8° |
CE1 | CZ | CE2 | HE2 | 179.8° | 179.7° |
CE1 | CZ | OH | HH | 180.0° | 90.0° |
HE1 | CE1 | CZ | CE2 | 180.0° | 179.8° |
HE1 | CE1 | CZ | OH | 0.5° | 0.0° |
CE2 | CZ | OH | HH | 0.5° | 89.8° |
HE2 | CE2 | CZ | OH | 0.3° | 0.0° |