PHY
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1 | C2 | sing | 1.53Å | 1.38Å | |
| C1 | N1 | sing | 1.47Å | 1.36Å | |
| C1 | P1 | sing | 1.82Å | 1.56Å | |
| C1 | H1 | sing | 1.09Å | 1.11Å | |
| C2 | H21 | sing | 1.09Å | 1.12Å | |
| C2 | H22 | sing | 1.09Å | 1.11Å | |
| C2 | H23 | sing | 1.09Å | 1.11Å | |
| C1' | C2' | sing | 1.53Å | 1.54Å | |
| C1' | P1 | sing | 1.82Å | 1.53Å | |
| C1' | H1'1 | sing | 1.09Å | 1.12Å | |
| C1' | H1'2 | sing | 1.09Å | 1.11Å | |
| C2' | C3' | sing | 1.53Å | 1.56Å | |
| C2' | C | sing | 1.51Å | 1.58Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| C3' | H3'1 | sing | 1.09Å | 1.12Å | |
| C3' | H3'2 | sing | 1.09Å | 1.12Å | |
| C3' | H3'3 | sing | 1.09Å | 1.12Å | |
| C | O1 | doub | 1.21Å | 1.21Å | |
| C | O2 | sing | 1.34Å | 1.28Å | |
| O2 | HO2 | sing | 0.97Å | 0.95Å | |
| N1 | HN11 | sing | 1.01Å | 1.02Å | |
| N1 | HN12 | sing | 1.01Å | 1.02Å | |
| P1 | O1P | doub | 1.48Å | 1.49Å | |
| P1 | O2P | sing | 1.61Å | 1.49Å | |
| O2P | P2 | sing | 1.61Å | 1.54Å | |
| P2 | O3P | doub | 1.48Å | 1.44Å | |
| P2 | O4P | sing | 1.61Å | 1.45Å | |
| P2 | O5P | sing | 1.61Å | 1.48Å | |
| O4P | HO4P | sing | 0.97Å | 0.95Å | |
| O5P | HO5P | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | C1 | N1 | 110.9° | 109.4° |
| C2 | C1 | P1 | 115.9° | 109.5° |
| C2 | C1 | H1 | 108.0° | 109.5° |
| C1 | C2 | H21 | 110.8° | 109.4° |
| C1 | C2 | H22 | 111.7° | 109.4° |
| C1 | C2 | H23 | 111.7° | 109.5° |
| N1 | C1 | P1 | 118.9° | 109.5° |
| N1 | C1 | H1 | 103.9° | 109.5° |
| C1 | N1 | HN11 | 110.8° | 106.7° |
| C1 | N1 | HN12 | 111.7° | 106.6° |
| P1 | C1 | H1 | 96.9° | 109.5° |
| C1 | P1 | C1' | 114.6° | 109.5° |
| C1 | P1 | O1P | 111.7° | 109.4° |
| C1 | P1 | O2P | 110.5° | 109.5° |
| H21 | C2 | H22 | 111.7° | 109.5° |
| H21 | C2 | H23 | 111.7° | 109.6° |
| H22 | C2 | H23 | 98.8° | 109.5° |
| C2' | C1' | P1 | 127.7° | 109.5° |
| C2' | C1' | H1'1 | 105.8° | 109.6° |
| C2' | C1' | H1'2 | 105.8° | 109.4° |
| C1' | C2' | C3' | 112.0° | 109.5° |
| C1' | C2' | C | 112.0° | 109.5° |
| C1' | C2' | H2' | 107.1° | 109.4° |
| P1 | C1' | H1'1 | 105.9° | 109.5° |
| P1 | C1' | H1'2 | 105.8° | 109.4° |
| C1' | P1 | O1P | 109.4° | 109.5° |
| C1' | P1 | O2P | 109.5° | 109.5° |
| H1'1 | C1' | H1'2 | 103.6° | 109.4° |
| C3' | C2' | C | 112.7° | 109.5° |
| C3' | C2' | H2' | 106.2° | 109.4° |
| C2' | C3' | H3'1 | 112.0° | 109.4° |
| C2' | C3' | H3'2 | 111.3° | 109.5° |
| C2' | C3' | H3'3 | 111.3° | 109.5° |
| C | C2' | H2' | 106.2° | 109.4° |
| C2' | C | O1 | 114.6° | 120.0° |
| C2' | C | O2 | 119.9° | 120.0° |
| H3'1 | C3' | H3'2 | 111.2° | 109.5° |
| H3'1 | C3' | H3'3 | 111.2° | 109.4° |
| H3'2 | C3' | H3'3 | 99.1° | 109.5° |
| O1 | C | O2 | 124.8° | 119.9° |
| C | O2 | HO2 | 119.9° | 120.1° |
| HN11 | N1 | HN12 | 111.7° | 106.7° |
| O1P | P1 | O2P | 100.1° | 109.4° |
| P1 | O2P | P2 | 134.8° | 106.8° |
| O2P | P2 | O3P | 100.2° | 109.5° |
| O2P | P2 | O4P | 118.5° | 109.5° |
| O2P | P2 | O5P | 104.1° | 109.5° |
| O3P | P2 | O4P | 110.4° | 109.5° |
| O3P | P2 | O5P | 108.6° | 109.5° |
| O4P | P2 | O5P | 113.9° | 109.4° |
| P2 | O4P | HO4P | 118.5° | 106.8° |
| P2 | O5P | HO5P | 104.0° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2 | C1 | N1 | P1 | 138.1° | 120.0° |
| C2 | C1 | N1 | H1 | 115.8° | 120.0° |
| C2 | C1 | P1 | H1 | 113.9° | 120.0° |
| C1 | C2 | H21 | H22 | 125.2° | 119.9° |
| C1 | C2 | H21 | H23 | 125.2° | 120.0° |
| C1 | C2 | H22 | H23 | 117.6° | 120.0° |
| C2 | C1 | P1 | C1' | 71.4° | 66.6° |
| C2 | C1 | N1 | HN11 | 180.0° | 60.0° |
| C2 | C1 | N1 | HN12 | 54.8° | 173.8° |
| C2 | C1 | P1 | O1P | 53.8° | 173.5° |
| C2 | C1 | P1 | O2P | 164.3° | 53.5° |
| N1 | C1 | P1 | H1 | 110.1° | 120.1° |
| N1 | C1 | C2 | H21 | 180.0° | 60.0° |
| N1 | C1 | C2 | H22 | 54.8° | 180.0° |
| N1 | C1 | C2 | H23 | 54.8° | 60.0° |
| N1 | C1 | P1 | C1' | 152.6° | 53.4° |
| C1 | N1 | HN11 | HN12 | 125.2° | 113.7° |
| N1 | C1 | P1 | O1P | 82.2° | 66.6° |
| N1 | C1 | P1 | O2P | 28.3° | 173.5° |
| P1 | C1 | C2 | H21 | 40.6° | 180.0° |
| P1 | C1 | C2 | H22 | 84.6° | 60.0° |
| P1 | C1 | C2 | H23 | 165.8° | 59.9° |
| C1 | P1 | C1' | C2' | 164.8° | 180.0° |
| C1 | P1 | C1' | O1P | 126.4° | 120.0° |
| C1 | P1 | C1' | O2P | 124.8° | 120.0° |
| C1 | P1 | C1' | H1'1 | 70.0° | 59.9° |
| C1 | P1 | C1' | H1'2 | 39.6° | 60.0° |
| P1 | C1 | N1 | HN11 | 41.9° | 60.0° |
| P1 | C1 | N1 | HN12 | 83.3° | 53.8° |
| C1 | P1 | O1P | O2P | 117.0° | 120.0° |
| C1 | P1 | O2P | P2 | 61.3° | 67.1° |
| H1 | C1 | C2 | H21 | 66.8° | 60.0° |
| H1 | C1 | C2 | H22 | 168.0° | 60.0° |
| H1 | C1 | C2 | H23 | 58.5° | 179.9° |
| H1 | C1 | P1 | C1' | 42.5° | 173.4° |
| H1 | C1 | N1 | HN11 | 64.2° | 180.0° |
| H1 | C1 | N1 | HN12 | 170.6° | 66.2° |
| H1 | C1 | P1 | O1P | 167.7° | 53.5° |
| H1 | C1 | P1 | O2P | 81.8° | 66.5° |
| H21 | C2 | H22 | H23 | 117.6° | 120.1° |
| C2' | C1' | P1 | H1'1 | 125.2° | 120.1° |
| C2' | C1' | P1 | H1'2 | 125.2° | 119.9° |
| C2' | C1' | H1'1 | H1'2 | 111.0° | 120.0° |
| C1' | C2' | C3' | C | 127.4° | 120.1° |
| C1' | C2' | C3' | H2' | 116.6° | 119.9° |
| C1' | C2' | C | H2' | 116.6° | 119.9° |
| C1' | C2' | C3' | H3'1 | 180.0° | 60.1° |
| C1' | C2' | C3' | H3'2 | 54.8° | 59.9° |
| C1' | C2' | C3' | H3'3 | 54.7° | 180.0° |
| C1' | C2' | C | O1 | 132.6° | 0.1° |
| C1' | C2' | C | O2 | 38.3° | 180.0° |
| C2' | C1' | P1 | O1P | 38.4° | 60.1° |
| C2' | C1' | P1 | O2P | 70.4° | 59.9° |
| P1 | C1' | H1'1 | H1'2 | 111.1° | 119.9° |
| P1 | C1' | C2' | C3' | 152.6° | 59.9° |
| P1 | C1' | C2' | C | 79.6° | 180.0° |
| P1 | C1' | C2' | H2' | 36.5° | 60.0° |
| C1' | P1 | O1P | O2P | 115.0° | 120.1° |
| C1' | P1 | O2P | P2 | 65.9° | 172.8° |
| H1'1 | C1' | C2' | C3' | 27.3° | 180.0° |
| H1'1 | C1' | C2' | C | 155.1° | 59.9° |
| H1'1 | C1' | C2' | H2' | 88.8° | 60.0° |
| H1'1 | C1' | P1 | O1P | 163.7° | 60.0° |
| H1'1 | C1' | P1 | O2P | 54.9° | 180.0° |
| H1'2 | C1' | C2' | C3' | 82.2° | 60.0° |
| H1'2 | C1' | C2' | C | 45.6° | 60.1° |
| H1'2 | C1' | C2' | H2' | 161.7° | 180.0° |
| H1'2 | C1' | P1 | O1P | 86.8° | 180.0° |
| H1'2 | C1' | P1 | O2P | 164.4° | 60.0° |
| C3' | C2' | C | H2' | 115.9° | 120.0° |
| C2' | C3' | H3'1 | H3'2 | 125.3° | 120.0° |
| C2' | C3' | H3'1 | H3'3 | 125.3° | 120.0° |
| C2' | C3' | H3'2 | H3'3 | 117.2° | 120.1° |
| C3' | C2' | C | O1 | 99.9° | 120.0° |
| C3' | C2' | C | O2 | 89.2° | 59.9° |
| C | C2' | C3' | H3'1 | 52.6° | 60.0° |
| C | C2' | C3' | H3'2 | 72.7° | 180.0° |
| C | C2' | C3' | H3'3 | 177.8° | 59.9° |
| C2' | C | O1 | O2 | 170.4° | 179.9° |
| C2' | C | O2 | HO2 | 179.9° | 180.0° |
| H2' | C2' | C3' | H3'1 | 63.4° | 180.0° |
| H2' | C2' | C3' | H3'2 | 171.4° | 60.0° |
| H2' | C2' | C3' | H3'3 | 61.9° | 60.0° |
| H2' | C2' | C | O1 | 16.0° | 120.0° |
| H2' | C2' | C | O2 | 154.9° | 60.1° |
| H3'1 | C3' | H3'2 | H3'3 | 117.1° | 120.0° |
| O1 | C | O2 | HO2 | 10.1° | 0.1° |
| O1P | P1 | O2P | P2 | 179.2° | 52.8° |
| P1 | O2P | P2 | O3P | 12.9° | 45.9° |
| P1 | O2P | P2 | O4P | 132.9° | 165.9° |
| P1 | O2P | P2 | O5P | 99.4° | 74.1° |
| O2P | P2 | O3P | O4P | 125.7° | 120.0° |
| O2P | P2 | O3P | O5P | 108.7° | 120.0° |
| O2P | P2 | O4P | O5P | 122.8° | 120.0° |
| O2P | P2 | O4P | HO4P | 180.0° | 180.0° |
| O2P | P2 | O5P | HO5P | 180.0° | 60.0° |
| O3P | P2 | O4P | O5P | 122.5° | 120.0° |
| O3P | P2 | O4P | HO4P | 65.3° | 60.0° |
| O3P | P2 | O5P | HO5P | 73.9° | 180.0° |
| O4P | P2 | O5P | HO5P | 49.6° | 60.0° |
| O5P | P2 | O4P | HO4P | 57.2° | 60.0° |
