PHL
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.48Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | C | sing | 1.53Å | 1.52Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| C | O | sing | 1.43Å | 1.39Å | |
| C | HC1 | sing | 1.09Å | 1.10Å | |
| C | HC2 | sing | 1.09Å | 1.10Å | |
| O | HO | sing | 0.97Å | 0.95Å | |
| CB | CG | sing | 1.51Å | 1.50Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CB | HB3 | sing | 1.09Å | 1.10Å | |
| CG | CD1 | doub | 1.38Å | 1.39Å | Aromatic |
| CG | CD2 | sing | 1.38Å | 1.39Å | Aromatic |
| CD1 | CE1 | sing | 1.38Å | 1.37Å | Aromatic |
| CD1 | HD1 | sing | 1.08Å | 1.08Å | |
| CD2 | CE2 | doub | 1.38Å | 1.37Å | Aromatic |
| CD2 | HD2 | sing | 1.08Å | 1.08Å | |
| CE1 | CZ | doub | 1.38Å | 1.40Å | Aromatic |
| CE1 | HE1 | sing | 1.08Å | 1.08Å | |
| CE2 | CZ | sing | 1.38Å | 1.38Å | Aromatic |
| CE2 | HE2 | sing | 1.08Å | 1.08Å | |
| CZ | HZ | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | C | 109.6° | 109.4° |
| N | CA | CB | 107.7° | 109.5° |
| N | CA | HA | 111.5° | 109.5° |
| H | N | H2 | 109.4° | 111.0° |
| C | CA | CB | 112.1° | 109.5° |
| C | CA | HA | 107.1° | 109.4° |
| CA | C | O | 109.7° | 109.5° |
| CA | C | HC1 | 109.4° | 109.4° |
| CA | C | HC2 | 109.3° | 109.5° |
| CB | CA | HA | 109.0° | 109.5° |
| CA | CB | CG | 114.0° | 109.5° |
| CA | CB | HB2 | 108.0° | 109.5° |
| CA | CB | HB3 | 106.9° | 109.4° |
| O | C | HC1 | 109.4° | 109.5° |
| O | C | HC2 | 109.4° | 109.5° |
| C | O | HO | 109.5° | 114.0° |
| HC1 | C | HC2 | 109.6° | 109.5° |
| CG | CB | HB2 | 108.0° | 109.5° |
| CG | CB | HB3 | 107.0° | 109.5° |
| CB | CG | CD1 | 121.4° | 120.0° |
| CB | CG | CD2 | 120.6° | 120.0° |
| HB2 | CB | HB3 | 113.1° | 109.5° |
| CD1 | CG | CD2 | 117.9° | 120.0° |
| CG | CD1 | CE1 | 122.0° | 120.0° |
| CG | CD1 | HD1 | 119.0° | 120.0° |
| CG | CD2 | CE2 | 120.8° | 120.0° |
| CG | CD2 | HD2 | 119.6° | 120.0° |
| CE1 | CD1 | HD1 | 119.0° | 120.0° |
| CD1 | CE1 | CZ | 118.9° | 120.0° |
| CD1 | CE1 | HE1 | 120.5° | 120.0° |
| CE2 | CD2 | HD2 | 119.6° | 119.9° |
| CD2 | CE2 | CZ | 120.6° | 120.0° |
| CD2 | CE2 | HE2 | 119.7° | 120.0° |
| CZ | CE1 | HE1 | 120.6° | 120.0° |
| CE1 | CZ | CE2 | 119.7° | 120.0° |
| CE1 | CZ | HZ | 120.2° | 120.0° |
| CZ | CE2 | HE2 | 119.7° | 120.0° |
| CE2 | CZ | HZ | 120.1° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 120.0° | 123.9° |
| N | CA | C | CB | 119.4° | 120.0° |
| N | CA | C | HA | 121.1° | 120.0° |
| N | CA | CB | HA | 121.1° | 120.1° |
| N | CA | C | O | 168.5° | 65.0° |
| N | CA | C | HC1 | 71.5° | 175.0° |
| N | CA | C | HC2 | 48.6° | 55.0° |
| N | CA | CB | CG | 63.4° | 65.0° |
| N | CA | CB | HB2 | 56.7° | 55.0° |
| N | CA | CB | HB3 | 178.6° | 175.0° |
| H | N | CA | C | 26.7° | 60.0° |
| H | N | CA | CB | 148.8° | 59.9° |
| H | N | CA | HA | 91.7° | 180.0° |
| H2 | N | CA | C | 93.3° | 176.1° |
| H2 | N | CA | CB | 28.8° | 64.0° |
| H2 | N | CA | HA | 148.3° | 56.1° |
| C | CA | CB | HA | 118.3° | 120.0° |
| CA | C | O | HC1 | 120.0° | 120.0° |
| CA | C | O | HC2 | 119.9° | 120.0° |
| CA | C | HC1 | HC2 | 119.9° | 120.0° |
| CA | C | O | HO | 106.2° | 179.9° |
| C | CA | CB | CG | 176.1° | 175.0° |
| C | CA | CB | HB2 | 63.9° | 65.0° |
| C | CA | CB | HB3 | 58.1° | 55.0° |
| CB | CA | C | O | 72.0° | 175.0° |
| CB | CA | C | HC1 | 48.0° | 55.1° |
| CB | CA | C | HC2 | 168.0° | 65.0° |
| CA | CB | CG | HB2 | 120.0° | 120.0° |
| CA | CB | CG | HB3 | 118.0° | 120.0° |
| CA | CB | HB2 | HB3 | 118.1° | 120.0° |
| CA | CB | CG | CD1 | 73.9° | 90.0° |
| CA | CB | CG | CD2 | 103.6° | 90.2° |
| HA | CA | C | O | 47.4° | 55.0° |
| HA | CA | C | HC1 | 167.4° | 64.9° |
| HA | CA | C | HC2 | 72.5° | 175.0° |
| HA | CA | CB | CG | 57.8° | 55.0° |
| HA | CA | CB | HB2 | 177.8° | 175.1° |
| HA | CA | CB | HB3 | 60.2° | 65.0° |
| O | C | HC1 | HC2 | 119.9° | 120.0° |
| HC1 | C | O | HO | 13.8° | 60.0° |
| HC2 | C | O | HO | 133.9° | 60.0° |
| CG | CB | HB2 | HB3 | 118.1° | 120.0° |
| CB | CG | CD1 | CD2 | 177.6° | 179.8° |
| CB | CG | CD1 | CE1 | 177.9° | 180.0° |
| CB | CG | CD1 | HD1 | 2.1° | 0.0° |
| CB | CG | CD2 | CE2 | 179.9° | 179.9° |
| CB | CG | CD2 | HD2 | 0.2° | 0.0° |
| HB2 | CB | CG | CD1 | 166.1° | 30.0° |
| HB2 | CB | CG | CD2 | 16.4° | 149.7° |
| HB3 | CB | CG | CD1 | 44.1° | 150.0° |
| HB3 | CB | CG | CD2 | 138.4° | 29.7° |
| CG | CD1 | CE1 | HD1 | 180.0° | 180.0° |
| CD1 | CG | CD2 | CE2 | 2.3° | 0.3° |
| CD1 | CG | CD2 | HD2 | 177.8° | 179.7° |
| CG | CD1 | CE1 | CZ | 2.4° | 0.0° |
| CG | CD1 | CE1 | HE1 | 177.6° | 179.9° |
| CD2 | CG | CD1 | CE1 | 0.3° | 0.3° |
| CD2 | CG | CD1 | HD1 | 179.7° | 179.8° |
| CG | CD2 | CE2 | HD2 | 180.0° | 180.0° |
| CG | CD2 | CE2 | CZ | 1.5° | 0.1° |
| CG | CD2 | CE2 | HE2 | 178.5° | 180.0° |
| CD1 | CE1 | CZ | HE1 | 180.0° | 179.9° |
| CD1 | CE1 | CZ | CE2 | 3.2° | 0.2° |
| CD1 | CE1 | CZ | HZ | 176.8° | 180.0° |
| HD1 | CD1 | CE1 | CZ | 177.6° | 180.0° |
| HD1 | CD1 | CE1 | HE1 | 2.4° | 0.0° |
| CD2 | CE2 | CZ | CE1 | 1.3° | 0.2° |
| CD2 | CE2 | CZ | HE2 | 180.0° | 179.9° |
| CD2 | CE2 | CZ | HZ | 178.7° | 180.0° |
| HD2 | CD2 | CE2 | CZ | 178.5° | 179.9° |
| HD2 | CD2 | CE2 | HE2 | 1.5° | 0.1° |
| CE1 | CZ | CE2 | HZ | 180.0° | 179.8° |
| CE1 | CZ | CE2 | HE2 | 178.7° | 179.7° |
| HE1 | CE1 | CZ | CE2 | 176.8° | 179.8° |
| HE1 | CE1 | CZ | HZ | 3.2° | 0.0° |
| HE2 | CE2 | CZ | HZ | 1.3° | 0.1° |
