PHE
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.46Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | HA | sing | 1.09Å | 1.11Å | |
| C | O | doub | 1.21Å | 1.25Å | |
| C | OXT | sing | 1.34Å | 1.25Å | |
| CB | CG | sing | 1.51Å | 1.51Å | |
| CB | HB2 | sing | 1.09Å | 1.12Å | |
| CB | HB3 | sing | 1.09Å | 1.12Å | |
| CG | CD1 | doub | 1.38Å | 1.39Å | Aromatic |
| CG | CD2 | sing | 1.38Å | 1.39Å | Aromatic |
| CD1 | CE1 | sing | 1.38Å | 1.39Å | Aromatic |
| CD1 | HD1 | sing | 1.08Å | 1.10Å | |
| CD2 | CE2 | doub | 1.38Å | 1.39Å | Aromatic |
| CD2 | HD2 | sing | 1.08Å | 1.10Å | |
| CE1 | CZ | doub | 1.38Å | 1.39Å | Aromatic |
| CE1 | HE1 | sing | 1.08Å | 1.10Å | |
| CE2 | CZ | sing | 1.38Å | 1.39Å | Aromatic |
| CE2 | HE2 | sing | 1.08Å | 1.10Å | |
| CZ | HZ | sing | 1.08Å | 1.10Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 110.8° | 106.6° |
| CA | N | H2 | 111.7° | 106.7° |
| N | CA | C | 110.8° | 109.5° |
| N | CA | CB | 110.1° | 109.5° |
| N | CA | HA | 108.5° | 109.4° |
| H | N | H2 | 111.7° | 106.7° |
| C | CA | CB | 110.3° | 109.5° |
| C | CA | HA | 108.3° | 109.4° |
| CA | C | O | 118.4° | 120.0° |
| CA | C | OXT | 117.8° | 120.0° |
| CB | CA | HA | 108.9° | 109.4° |
| CA | CB | CG | 114.0° | 109.5° |
| CA | CB | HB2 | 110.6° | 109.4° |
| CA | CB | HB3 | 110.6° | 109.5° |
| O | C | OXT | 123.8° | 120.0° |
| C | OXT | HXT | 117.7° | 120.0° |
| CG | CB | HB2 | 110.5° | 109.5° |
| CG | CB | HB3 | 110.5° | 109.5° |
| CB | CG | CD1 | 120.8° | 120.1° |
| CB | CG | CD2 | 120.5° | 120.0° |
| HB2 | CB | HB3 | 99.7° | 109.4° |
| CD1 | CG | CD2 | 118.7° | 119.9° |
| CG | CD1 | CE1 | 120.9° | 120.0° |
| CG | CD1 | HD1 | 119.6° | 120.0° |
| CG | CD2 | CE2 | 121.0° | 120.0° |
| CG | CD2 | HD2 | 119.6° | 120.0° |
| CE1 | CD1 | HD1 | 119.5° | 120.0° |
| CD1 | CE1 | CZ | 119.6° | 120.0° |
| CD1 | CE1 | HE1 | 120.4° | 120.0° |
| CE2 | CD2 | HD2 | 119.4° | 120.1° |
| CD2 | CE2 | CZ | 119.9° | 120.0° |
| CD2 | CE2 | HE2 | 119.9° | 119.9° |
| CZ | CE1 | HE1 | 120.1° | 120.0° |
| CE1 | CZ | CE2 | 120.0° | 120.0° |
| CE1 | CZ | HZ | 120.0° | 120.1° |
| CZ | CE2 | HE2 | 120.2° | 120.0° |
| CE2 | CZ | HZ | 120.0° | 119.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 125.2° | 113.8° |
| N | CA | C | CB | 122.2° | 120.1° |
| N | CA | C | HA | 118.8° | 120.0° |
| N | CA | CB | HA | 118.8° | 119.9° |
| N | CA | C | O | 104.8° | 30.1° |
| N | CA | C | OXT | 74.3° | 150.0° |
| N | CA | CB | CG | 173.3° | 59.9° |
| N | CA | CB | HB2 | 48.0° | 60.1° |
| N | CA | CB | HB3 | 61.4° | 180.0° |
| H | N | CA | C | 180.0° | 60.0° |
| H | N | CA | CB | 57.7° | 60.1° |
| H | N | CA | HA | 61.3° | 180.0° |
| H2 | N | CA | C | 54.8° | 173.8° |
| H2 | N | CA | CB | 67.5° | 53.7° |
| H2 | N | CA | HA | 173.5° | 66.2° |
| C | CA | CB | HA | 118.7° | 120.0° |
| CA | C | O | OXT | 179.1° | 179.9° |
| C | CA | CB | CG | 64.2° | 180.0° |
| C | CA | CB | HB2 | 170.6° | 59.9° |
| C | CA | CB | HB3 | 61.1° | 59.9° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| CB | CA | C | O | 17.4° | 90.0° |
| CB | CA | C | OXT | 163.5° | 89.9° |
| CA | CB | CG | HB2 | 125.3° | 120.0° |
| CA | CB | CG | HB3 | 125.3° | 120.1° |
| CA | CB | HB2 | HB3 | 116.4° | 120.0° |
| CA | CB | CG | CD1 | 50.0° | 90.0° |
| CA | CB | CG | CD2 | 131.4° | 90.3° |
| HA | CA | C | O | 136.4° | 150.0° |
| HA | CA | C | OXT | 44.5° | 30.1° |
| HA | CA | CB | CG | 54.5° | 60.0° |
| HA | CA | CB | HB2 | 70.8° | 179.9° |
| HA | CA | CB | HB3 | 179.8° | 60.1° |
| O | C | OXT | HXT | 0.9° | 0.1° |
| CG | CB | HB2 | HB3 | 116.3° | 120.0° |
| CB | CG | CD1 | CD2 | 178.6° | 179.8° |
| CB | CG | CD1 | CE1 | 178.6° | 180.0° |
| CB | CG | CD1 | HD1 | 1.4° | 0.0° |
| CB | CG | CD2 | CE2 | 178.5° | 179.8° |
| CB | CG | CD2 | HD2 | 1.5° | 0.2° |
| HB2 | CB | CG | CD1 | 75.3° | 30.0° |
| HB2 | CB | CG | CD2 | 103.3° | 149.7° |
| HB3 | CB | CG | CD1 | 175.4° | 150.0° |
| HB3 | CB | CG | CD2 | 6.1° | 29.8° |
| CG | CD1 | CE1 | HD1 | 180.0° | 180.0° |
| CD1 | CG | CD2 | CE2 | 0.1° | 0.4° |
| CD1 | CG | CD2 | HD2 | 179.9° | 179.9° |
| CG | CD1 | CE1 | CZ | 0.1° | 0.0° |
| CG | CD1 | CE1 | HE1 | 180.0° | 180.0° |
| CD2 | CG | CD1 | CE1 | 0.0° | 0.2° |
| CD2 | CG | CD1 | HD1 | 180.0° | 179.7° |
| CG | CD2 | CE2 | HD2 | 180.0° | 179.7° |
| CG | CD2 | CE2 | CZ | 0.1° | 0.4° |
| CG | CD2 | CE2 | HE2 | 179.8° | 179.7° |
| CD1 | CE1 | CZ | HE1 | 180.0° | 180.0° |
| CD1 | CE1 | CZ | CE2 | 0.1° | 0.0° |
| CD1 | CE1 | CZ | HZ | 179.9° | 179.9° |
| HD1 | CD1 | CE1 | CZ | 179.9° | 179.9° |
| HD1 | CD1 | CE1 | HE1 | 0.1° | 0.1° |
| CD2 | CE2 | CZ | CE1 | 0.0° | 0.2° |
| CD2 | CE2 | CZ | HE2 | 179.9° | 179.9° |
| CD2 | CE2 | CZ | HZ | 180.0° | 179.9° |
| HD2 | CD2 | CE2 | CZ | 179.9° | 179.9° |
| HD2 | CD2 | CE2 | HE2 | 0.1° | 0.0° |
| CE1 | CZ | CE2 | HZ | 180.0° | 179.9° |
| CE1 | CZ | CE2 | HE2 | 179.9° | 179.9° |
| HE1 | CE1 | CZ | CE2 | 180.0° | 180.0° |
| HE1 | CE1 | CZ | HZ | 0.0° | 0.1° |
| HE2 | CE2 | CZ | HZ | 0.1° | 0.0° |
