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Summary Geometry Related PDB entries

Obsolete: PGQ

PGQ was replaced with PGO on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.74Å
C1	O1	sing	1.43Å	1.36Å
C1	H11	sing	1.09Å	1.11Å
C1	H12	sing	1.09Å	1.11Å
C2	C3	sing	1.53Å	1.50Å
C2	O2	sing	1.43Å	1.47Å
C2	H2	sing	1.09Å	1.11Å
C3	H31	sing	1.09Å	1.11Å
C3	H32	sing	1.09Å	1.12Å
C3	H33	sing	1.09Å	1.12Å
O1	HO1	sing	0.97Å	0.95Å
O2	HO2	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	O1	120.9°	109.5°
C2	C1	H11	108.2°	109.5°
C2	C1	H12	108.1°	109.4°
C1	C2	C3	109.7°	109.5°
C1	C2	O2	110.6°	109.5°
C1	C2	H2	110.1°	109.4°
O1	C1	H11	108.1°	109.5°
O1	C1	H12	108.1°	109.4°
C1	O1	HO1	120.9°	106.9°
H11	C1	H12	101.8°	109.5°
C3	C2	O2	113.6°	109.6°
C3	C2	H2	106.8°	109.4°
C2	C3	H31	109.7°	109.5°
C2	C3	H32	112.1°	109.4°
C2	C3	H33	112.1°	109.5°
O2	C2	H2	105.8°	109.4°
C2	O2	HO2	110.6°	106.7°
H31	C3	H32	112.1°	109.4°
H31	C3	H33	112.1°	109.5°
H32	C3	H33	98.3°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	O1	H11	125.3°	120.1°
C2	C1	O1	H12	125.2°	120.0°
C2	C1	H11	H12	113.8°	120.0°
C1	C2	C3	O2	124.4°	120.1°
C1	C2	C3	H2	119.3°	119.9°
C1	C2	O2	H2	119.2°	119.9°
C1	C2	C3	H31	180.0°	180.0°
C1	C2	C3	H32	54.8°	60.1°
C1	C2	C3	H33	54.7°	59.9°
C2	C1	O1	HO1	179.9°	180.0°
C1	C2	O2	HO2	180.0°	60.1°
O1	C1	H11	H12	113.7°	120.0°
O1	C1	C2	C3	96.9°	180.0°
O1	C1	C2	O2	29.3°	59.9°
O1	C1	C2	H2	145.9°	60.0°
H11	C1	C2	C3	137.8°	59.9°
H11	C1	C2	O2	96.0°	180.0°
H11	C1	C2	H2	20.6°	60.0°
H11	C1	O1	HO1	54.8°	59.9°
H12	C1	C2	C3	28.3°	60.1°
H12	C1	C2	O2	154.5°	60.1°
H12	C1	C2	H2	88.9°	NaN°
H12	C1	O1	HO1	54.7°	60.1°
C3	C2	O2	H2	116.9°	119.9°
C2	C3	H31	H32	125.2°	119.9°
C2	C3	H31	H33	125.3°	120.1°
C2	C3	H32	H33	118.0°	120.0°
C3	C2	O2	HO2	56.0°	60.0°
O2	C2	C3	H31	55.6°	59.9°
O2	C2	C3	H32	69.6°	60.0°
O2	C2	C3	H33	179.1°	180.0°
H2	C2	C3	H31	60.7°	60.1°
H2	C2	C3	H32	174.0°	180.0°
H2	C2	C3	H33	64.6°	60.1°
H2	C2	O2	HO2	60.9°	180.0°
H31	C3	H32	H33	118.0°	120.0°

222036

PDB entries from 2024-07-03

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