PGN

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P1	O4P	doub	1.50Å	1.48Å
P1	O5P	sing	1.62Å	1.48Å
P1	O6P	sing	1.62Å	12.68Å
P1	O3'	sing	1.61Å	1.61Å
O5P	HOP5	sing	0.98Å	0.95Å
O6P	HOP6	sing	0.98Å	0.95Å
P	OP1	doub	1.50Å	1.48Å
P	OP2	sing	1.62Å	1.48Å
P	OP3	sing	1.62Å	11.15Å
P	O5'	sing	1.62Å	1.62Å
OP2	HOP2	sing	0.98Å	0.95Å
OP3	HOP3	sing	0.98Å	0.95Å
O5'	C5'	sing	1.42Å	1.42Å
C5'	C4'	sing	1.52Å	1.54Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5''	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.42Å
C4'	C3'	sing	1.52Å	1.53Å
C4'	H4'	sing	1.10Å	1.10Å
O4'	C1'	sing	1.44Å	1.40Å
C3'	O3'	sing	1.41Å	1.42Å
C3'	C2'	sing	1.51Å	1.52Å
C3'	H3'	sing	1.10Å	1.10Å
C2'	C1'	sing	1.52Å	1.51Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2''	sing	1.10Å	1.10Å
C1'	N9	sing	1.46Å	1.48Å
C1'	H1'	sing	1.09Å	1.10Å
N9	C8	sing	1.37Å	1.36Å	Aromatic
N9	C4	sing	1.37Å	1.38Å	Aromatic
C8	N7	doub	1.32Å	1.30Å	Aromatic
C8	H8	sing	1.08Å	1.08Å
N7	C5	sing	1.36Å	1.39Å	Aromatic
C5	C6	sing	1.44Å	1.43Å
C5	C4	doub	1.37Å	1.38Å	Aromatic
C6	O6	doub	1.22Å	1.23Å
C6	N1	sing	1.40Å	1.39Å
N1	C2	sing	1.41Å	1.38Å
N1	HN1	sing	1.02Å	1.00Å
C2	N2	sing	1.37Å	1.33Å
C2	N3	doub	1.32Å	1.35Å
N2	HN21	sing	0.99Å	1.00Å
N2	HN22	sing	0.99Å	1.00Å
N3	C4	sing	1.35Å	1.36Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O4P	P1	O5P	118.8°	115.2°
O4P	P1	O6P	113.8°	115.0°
O4P	P1	O3'	107.7°	115.1°
O5P	P1	O6P	126.8°	103.3°
O5P	P1	O3'	107.8°	103.8°
P1	O5P	HOP5	109.5°	118.9°
O6P	P1	O3'	46.0°	102.6°
P1	O6P	HOP6	113.8°	118.9°
P1	O3'	C3'	122.1°	118.2°
OP1	P	OP2	119.3°	115.3°
OP1	P	OP3	152.4°	115.0°
OP1	P	O5'	108.1°	115.0°
OP2	P	OP3	88.3°	103.3°
OP2	P	O5'	109.3°	103.7°
P	OP2	HOP2	109.5°	118.9°
OP3	P	O5'	57.3°	102.9°
P	OP3	HOP3	152.4°	118.9°
P	O5'	C5'	123.8°	118.5°
O5'	C5'	C4'	111.8°	108.7°
O5'	C5'	H5'	108.2°	109.2°
O5'	C5'	H5''	108.7°	109.2°
C4'	C5'	H5'	108.2°	110.1°
C4'	C5'	H5''	108.7°	110.1°
C5'	C4'	O4'	111.0°	109.7°
C5'	C4'	C3'	113.4°	113.6°
C5'	C4'	H4'	105.6°	108.6°
H5'	C5'	H5''	111.3°	109.6°
O4'	C4'	C3'	109.5°	105.5°
O4'	C4'	H4'	109.8°	108.2°
C4'	O4'	C1'	106.5°	108.1°
C3'	C4'	H4'	107.2°	111.1°
C4'	C3'	O3'	109.7°	112.4°
C4'	C3'	C2'	99.7°	101.8°
C4'	C3'	H3'	115.7°	111.5°
O4'	C1'	C2'	104.5°	107.7°
O4'	C1'	N9	112.2°	109.4°
O4'	C1'	H1'	113.1°	109.1°
O3'	C3'	C2'	110.0°	111.3°
O3'	C3'	H3'	106.3°	109.4°
C2'	C3'	H3'	115.4°	110.2°
C3'	C2'	C1'	100.7°	103.2°
C3'	C2'	H2'	114.3°	112.8°
C3'	C2'	H2''	112.5°	109.9°
C1'	C2'	H2'	114.3°	114.1°
C1'	C2'	H2''	112.5°	110.0°
C2'	C1'	N9	115.0°	113.8°
C2'	C1'	H1'	110.1°	111.7°
H2'	C2'	H2''	103.0°	106.8°
N9	C1'	H1'	102.2°	105.1°
C1'	N9	C8	126.2°	126.1°
C1'	N9	C4	128.0°	127.3°
C8	N9	C4	104.9°	106.6°
N9	C8	N7	115.5°	112.5°
N9	C8	H8	122.2°	122.0°
N9	C4	C5	105.7°	104.9°
N9	C4	N3	127.5°	126.0°
N7	C8	H8	122.2°	125.5°
C8	N7	C5	102.9°	103.9°
N7	C5	C6	129.8°	128.6°
N7	C5	C4	110.7°	112.1°
C6	C5	C4	119.6°	119.3°
C5	C6	O6	128.3°	123.8°
C5	C6	N1	112.5°	110.7°
C5	C4	N3	126.7°	129.1°
O6	C6	N1	119.2°	125.4°
C6	N1	C2	124.4°	125.3°
C6	N1	HN1	117.8°	117.4°
C2	N1	HN1	117.8°	117.4°
N1	C2	N2	115.8°	115.3°
N1	C2	N3	123.5°	122.7°
N2	C2	N3	120.7°	122.0°
C2	N2	HN21	125.4°	118.3°
C2	N2	HN22	109.2°	118.3°
C2	N3	C4	113.2°	113.0°
HN21	N2	HN22	125.3°	123.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O4P	P1	O5P	O6P	170.5°	126.3°
O4P	P1	O5P	O3'	122.8°	126.8°
O4P	P1	O6P	O3'	92.0°	125.8°
O4P	P1	O5P	HOP5	76.4°	48.8°
O4P	P1	O6P	HOP6	180.0°	48.0°
O4P	P1	O3'	C3'	175.9°	60.0°
O5P	P1	O6P	O3'	78.9°	107.8°
O5P	P1	O6P	HOP6	9.1°	78.5°
O5P	P1	O3'	C3'	54.8°	173.1°
O6P	P1	O5P	HOP5	94.2°	77.4°
O6P	P1	O3'	C3'	69.6°	65.7°
O3'	P1	O5P	HOP5	46.4°	175.7°
O3'	P1	O6P	HOP6	88.0°	173.8°
P1	O3'	C3'	C4'	157.6°	173.4°
P1	O3'	C3'	C2'	93.7°	60.0°
P1	O3'	C3'	H3'	31.8°	62.1°
OP1	P	OP2	OP3	179.4°	126.3°
OP1	P	OP2	O5'	125.1°	126.6°
OP1	P	OP3	O5'	64.6°	125.8°
OP1	P	OP2	HOP2	24.6°	48.8°
OP1	P	OP3	HOP3	180.0°	48.1°
OP1	P	O5'	C5'	48.3°	180.0°
OP2	P	OP3	O5'	114.4°	107.7°
OP2	P	OP3	HOP3	1.1°	78.4°
OP2	P	O5'	C5'	83.1°	53.2°
OP3	P	OP2	HOP2	155.9°	77.5°
OP3	P	O5'	C5'	157.9°	54.2°
O5'	P	OP2	HOP2	149.7°	175.4°
O5'	P	OP3	HOP3	115.4°	173.9°
P	O5'	C5'	C4'	114.5°	180.0°
P	O5'	C5'	H5'	126.5°	59.9°
P	O5'	C5'	H5''	5.5°	59.9°
O5'	C5'	C4'	H5'	119.0°	119.6°
O5'	C5'	C4'	H5''	120.0°	119.5°
O5'	C5'	H5'	H5''	119.4°	119.5°
O5'	C5'	C4'	O4'	59.3°	61.8°
O5'	C5'	C4'	C3'	64.5°	179.5°
O5'	C5'	C4'	H4'	178.3°	56.3°
C4'	C5'	H5'	H5''	119.4°	121.2°
C5'	C4'	O4'	C3'	126.0°	122.8°
C5'	C4'	O4'	H4'	116.5°	118.3°
C5'	C4'	C3'	H4'	116.2°	122.8°
C5'	C4'	O4'	C1'	135.1°	148.9°
C5'	C4'	C3'	O3'	138.0°	83.6°
C5'	C4'	C3'	C2'	106.5°	157.2°
C5'	C4'	C3'	H3'	17.8°	39.7°
H5'	C5'	C4'	O4'	59.7°	57.8°
H5'	C5'	C4'	C3'	176.5°	60.0°
H5'	C5'	C4'	H4'	59.3°	175.9°
H5''	C5'	C4'	O4'	179.3°	178.7°
H5''	C5'	C4'	C3'	55.5°	60.9°
H5''	C5'	C4'	H4'	61.7°	63.3°
O4'	C4'	C3'	H4'	119.1°	117.0°
O4'	C4'	C3'	O3'	97.4°	156.2°
O4'	C4'	C3'	C2'	18.1°	37.0°
O4'	C4'	C3'	H3'	142.5°	80.5°
C4'	O4'	C1'	C2'	33.3°	4.6°
C4'	O4'	C1'	N9	158.5°	128.8°
C4'	O4'	C1'	H1'	86.5°	116.8°
C3'	C4'	O4'	C1'	9.1°	26.2°
C4'	C3'	O3'	C2'	108.7°	113.4°
C4'	C3'	O3'	H3'	125.7°	124.5°
C4'	C3'	C2'	H3'	124.6°	118.4°
C4'	C3'	C2'	C1'	36.0°	33.0°
C4'	C3'	C2'	H2'	159.0°	156.6°
C4'	C3'	C2'	H2''	84.0°	84.3°
H4'	C4'	O4'	C1'	108.4°	92.8°
H4'	C4'	C3'	O3'	21.8°	39.2°
H4'	C4'	C3'	C2'	137.2°	80.0°
H4'	C4'	C3'	H3'	98.4°	162.5°
O4'	C1'	C2'	C3'	44.2°	18.6°
O4'	C1'	C2'	N9	123.4°	121.4°
O4'	C1'	C2'	H1'	121.8°	119.8°
O4'	C1'	C2'	H2'	167.3°	141.4°
O4'	C1'	C2'	H2''	75.8°	98.6°
O4'	C1'	N9	H1'	121.5°	117.1°
O4'	C1'	N9	C8	122.9°	33.0°
O4'	C1'	N9	C4	69.3°	147.1°
O3'	C3'	C2'	H3'	120.2°	121.6°
O3'	C3'	C2'	C1'	79.3°	152.9°
O3'	C3'	C2'	H2'	43.8°	83.4°
O3'	C3'	C2'	H2''	160.7°	35.7°
C3'	C2'	C1'	H2'	123.1°	122.8°
C3'	C2'	C1'	H2''	120.0°	117.2°
C3'	C2'	H2'	H2''	122.4°	120.9°
C3'	C2'	C1'	N9	167.7°	102.8°
C3'	C2'	C1'	H1'	77.6°	138.4°
H3'	C3'	C2'	C1'	160.5°	85.5°
H3'	C3'	C2'	H2'	76.4°	38.2°
H3'	C3'	C2'	H2''	40.5°	157.3°
C1'	C2'	H2'	H2''	122.3°	121.8°
C2'	C1'	N9	H1'	119.3°	122.5°
C2'	C1'	N9	C8	3.6°	87.5°
C2'	C1'	N9	C4	171.4°	92.5°
H2'	C2'	C1'	N9	69.3°	20.0°
H2'	C2'	C1'	H1'	45.5°	98.8°
H2''	C2'	C1'	N9	47.7°	140.0°
H2''	C2'	C1'	H1'	162.4°	21.2°
C1'	N9	C8	C4	170.0°	180.0°
C1'	N9	C8	N7	164.9°	180.0°
C1'	N9	C8	H8	15.1°	0.1°
C1'	N9	C4	C5	164.6°	180.0°
C1'	N9	C4	N3	13.5°	0.0°
H1'	C1'	N9	C8	115.6°	150.0°
H1'	C1'	N9	C4	52.1°	30.0°
N9	C8	N7	H8	180.0°	179.9°
N9	C8	N7	C5	2.6°	0.0°
C8	N9	C4	C5	5.2°	0.0°
C8	N9	C4	N3	176.7°	180.0°
C4	N9	C8	N7	5.2°	0.0°
C4	N9	C8	H8	174.9°	180.0°
N9	C4	C5	N7	4.0°	0.0°
N9	C4	C5	C6	175.8°	180.0°
N9	C4	C5	N3	178.1°	180.0°
N9	C4	N3	C2	178.4°	180.0°
C8	N7	C5	C6	178.8°	180.0°
C8	N7	C5	C4	1.0°	0.0°
H8	C8	N7	C5	177.4°	179.9°
N7	C5	C6	C4	179.8°	180.0°
N7	C5	C6	O6	3.2°	0.0°
N7	C5	C6	N1	177.4°	180.0°
N7	C5	C4	N3	177.9°	180.0°
C5	C6	O6	N1	179.4°	180.0°
C5	C6	N1	C2	0.9°	0.0°
C5	C6	N1	HN1	179.1°	180.0°
C6	C5	C4	N3	2.3°	0.0°
C4	C5	C6	O6	176.5°	180.0°
C4	C5	C6	N1	2.9°	0.0°
C5	C4	N3	C2	0.7°	0.0°
O6	C6	N1	C2	178.6°	180.0°
O6	C6	N1	HN1	1.4°	0.0°
C6	N1	C2	HN1	180.0°	180.0°
C6	N1	C2	N2	179.9°	180.0°
C6	N1	C2	N3	2.2°	0.0°
N1	C2	N2	N3	178.0°	180.0°
N1	C2	N2	HN21	0.0°	42.6°
N1	C2	N2	HN22	180.0°	137.4°
N1	C2	N3	C4	2.9°	0.0°
HN1	N1	C2	N2	0.1°	0.1°
HN1	N1	C2	N3	177.8°	180.0°
C2	N2	HN21	HN22	180.0°	180.0°
N2	C2	N3	C4	179.3°	180.0°
N3	C2	N2	HN21	177.9°	137.4°
N3	C2	N2	HN22	2.0°	42.6°

Definition date:	2001-07-02
Last modified:	2024-09-27
Release status:	REL
Processing site:	RCSB