PGI
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O6 | C6 | sing | 1.43Å | 1.41Å | |
O6 | H6 | sing | 0.97Å | 0.95Å | |
C6 | C5 | sing | 1.53Å | 1.51Å | |
C6 | H6C1 | sing | 1.09Å | 1.10Å | |
C6 | H6C2 | sing | 1.09Å | 1.10Å | |
C5 | C4 | sing | 1.53Å | 1.53Å | |
C5 | N1 | sing | 1.47Å | 1.48Å | |
C5 | H5 | sing | 1.09Å | 1.10Å | |
C4 | O4 | sing | 1.43Å | 1.43Å | |
C4 | C3 | sing | 1.53Å | 1.56Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
O4 | HA | sing | 0.97Å | 0.95Å | |
C3 | O3 | sing | 1.43Å | 1.45Å | |
C3 | C2 | sing | 1.53Å | 1.52Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
O3 | HB | sing | 0.97Å | 0.95Å | |
C2 | O2 | sing | 1.43Å | 1.42Å | |
C2 | C1 | sing | 1.51Å | 1.50Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
O2 | HC | sing | 0.97Å | 0.95Å | |
N1 | C8 | sing | 1.34Å | 1.34Å | Aromatic |
N1 | C1 | doub | 1.31Å | 1.33Å | Aromatic |
C8 | C7 | doub | 1.35Å | 1.38Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.08Å | |
C7 | N2 | sing | 1.37Å | 1.36Å | Aromatic |
C7 | C9 | sing | 1.51Å | 1.55Å | |
N2 | C1 | sing | 1.35Å | 1.34Å | Aromatic |
N2 | HD | sing | 0.97Å | 1.00Å | |
C9 | C10 | sing | 1.53Å | 1.54Å | |
C9 | H9C1 | sing | 1.09Å | 1.10Å | |
C9 | H9C2 | sing | 1.09Å | 1.10Å | |
C10 | C14 | sing | 1.51Å | 1.53Å | |
C10 | H101 | sing | 1.09Å | 1.10Å | |
C10 | H102 | sing | 1.09Å | 1.10Å | |
C14 | C13 | doub | 1.38Å | 1.40Å | Aromatic |
C14 | C15 | sing | 1.38Å | 1.41Å | Aromatic |
C13 | C12 | sing | 1.38Å | 1.40Å | Aromatic |
C13 | H13 | sing | 1.08Å | 1.08Å | |
C12 | C11 | doub | 1.38Å | 1.40Å | Aromatic |
C12 | H12 | sing | 1.08Å | 1.08Å | |
C15 | C16 | doub | 1.38Å | 1.39Å | Aromatic |
C15 | H15 | sing | 1.08Å | 1.08Å | |
C16 | C11 | sing | 1.38Å | 1.40Å | Aromatic |
C16 | H16 | sing | 1.08Å | 1.08Å | |
C11 | H11 | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C6 | O6 | H6 | 109.5° | 106.8° |
O6 | C6 | C5 | 109.9° | 109.4° |
O6 | C6 | H6C1 | 109.3° | 109.5° |
O6 | C6 | H6C2 | 109.2° | 109.4° |
C5 | C6 | H6C1 | 109.3° | 109.5° |
C5 | C6 | H6C2 | 109.2° | 109.5° |
C6 | C5 | C4 | 113.3° | 109.5° |
C6 | C5 | N1 | 110.2° | 109.5° |
C6 | C5 | H5 | 105.6° | 109.6° |
H6C1 | C6 | H6C2 | 109.8° | 109.5° |
C4 | C5 | N1 | 107.2° | 109.1° |
C4 | C5 | H5 | 108.7° | 109.5° |
C5 | C4 | O4 | 110.4° | 109.5° |
C5 | C4 | C3 | 109.1° | 109.3° |
C5 | C4 | H4 | 110.3° | 109.5° |
N1 | C5 | H5 | 112.0° | 109.6° |
C5 | N1 | C8 | 128.7° | 126.2° |
C5 | N1 | C1 | 121.8° | 124.8° |
O4 | C4 | C3 | 112.7° | 109.6° |
O4 | C4 | H4 | 106.5° | 109.4° |
C4 | O4 | HA | 109.5° | 106.8° |
C3 | C4 | H4 | 107.7° | 109.5° |
C4 | C3 | O3 | 114.5° | 109.6° |
C4 | C3 | C2 | 110.5° | 108.9° |
C4 | C3 | H3 | 104.9° | 109.6° |
O3 | C3 | C2 | 108.5° | 109.6° |
O3 | C3 | H3 | 107.0° | 109.6° |
C3 | O3 | HB | 109.5° | 106.8° |
C2 | C3 | H3 | 111.3° | 109.6° |
C3 | C2 | O2 | 107.7° | 109.7° |
C3 | C2 | C1 | 112.3° | 108.4° |
C3 | C2 | H2 | 109.4° | 109.7° |
O2 | C2 | C1 | 111.2° | 109.7° |
O2 | C2 | H2 | 110.5° | 109.7° |
C2 | O2 | HC | 109.5° | 106.8° |
C1 | C2 | H2 | 105.7° | 109.7° |
C2 | C1 | N1 | 125.7° | 124.8° |
C2 | C1 | N2 | 127.0° | 126.4° |
C8 | N1 | C1 | 109.5° | 109.1° |
N1 | C8 | C7 | 107.7° | 108.1° |
N1 | C8 | H8 | 126.1° | 125.9° |
N1 | C1 | N2 | 107.3° | 108.7° |
C7 | C8 | H8 | 126.2° | 126.0° |
C8 | C7 | N2 | 105.5° | 106.9° |
C8 | C7 | C9 | 127.3° | 126.5° |
N2 | C7 | C9 | 127.2° | 126.6° |
C7 | N2 | C1 | 110.0° | 107.2° |
C7 | N2 | HD | 125.0° | 126.5° |
C7 | C9 | C10 | 110.7° | 109.5° |
C7 | C9 | H9C1 | 108.8° | 109.5° |
C7 | C9 | H9C2 | 109.1° | 109.4° |
C1 | N2 | HD | 125.0° | 126.3° |
C10 | C9 | H9C1 | 108.8° | 109.5° |
C10 | C9 | H9C2 | 109.1° | 109.5° |
C9 | C10 | C14 | 117.5° | 109.5° |
C9 | C10 | H101 | 105.0° | 109.5° |
C9 | C10 | H102 | 106.9° | 109.5° |
H9C1 | C9 | H9C2 | 110.4° | 109.5° |
C14 | C10 | H101 | 105.0° | 109.5° |
C14 | C10 | H102 | 106.9° | 109.4° |
C10 | C14 | C13 | 117.8° | 120.0° |
C10 | C14 | C15 | 122.9° | 120.0° |
H101 | C10 | H102 | 116.0° | 109.5° |
C13 | C14 | C15 | 119.2° | 120.0° |
C14 | C13 | C12 | 121.1° | 120.0° |
C14 | C13 | H13 | 119.4° | 120.0° |
C14 | C15 | C16 | 120.1° | 120.0° |
C14 | C15 | H15 | 120.0° | 119.9° |
C12 | C13 | H13 | 119.4° | 120.0° |
C13 | C12 | C11 | 118.9° | 120.0° |
C13 | C12 | H12 | 120.6° | 120.0° |
C11 | C12 | H12 | 120.6° | 120.0° |
C12 | C11 | C16 | 120.7° | 120.0° |
C12 | C11 | H11 | 119.6° | 119.9° |
C16 | C15 | H15 | 120.0° | 120.0° |
C15 | C16 | C11 | 120.0° | 120.0° |
C15 | C16 | H16 | 120.0° | 120.0° |
C11 | C16 | H16 | 120.0° | 120.0° |
C16 | C11 | H11 | 119.7° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O6 | C6 | C5 | H6C1 | 120.0° | 120.0° |
O6 | C6 | C5 | H6C2 | 119.8° | 120.0° |
O6 | C6 | H6C1 | H6C2 | 119.8° | 120.0° |
O6 | C6 | C5 | C4 | 77.1° | 175.2° |
O6 | C6 | C5 | N1 | 43.0° | 65.2° |
O6 | C6 | C5 | H5 | 164.0° | 55.0° |
H6 | O6 | C6 | C5 | 121.2° | 180.0° |
H6 | O6 | C6 | H6C1 | 1.2° | 60.0° |
H6 | O6 | C6 | H6C2 | 119.0° | 60.0° |
C5 | C6 | H6C1 | H6C2 | 119.8° | 120.0° |
C6 | C5 | C4 | N1 | 121.8° | 119.9° |
C6 | C5 | C4 | H5 | 117.1° | 120.2° |
C6 | C5 | N1 | H5 | 117.2° | 120.2° |
C6 | C5 | C4 | O4 | 53.3° | 69.9° |
C6 | C5 | C4 | C3 | 177.7° | 170.1° |
C6 | C5 | C4 | H4 | 64.2° | 50.1° |
C6 | C5 | N1 | C8 | 23.6° | 42.7° |
C6 | C5 | N1 | C1 | 154.7° | 137.2° |
H6C1 | C6 | C5 | C4 | 42.9° | 64.8° |
H6C1 | C6 | C5 | N1 | 163.0° | 54.8° |
H6C1 | C6 | C5 | H5 | 76.0° | 175.0° |
H6C2 | C6 | C5 | C4 | 163.0° | 55.2° |
H6C2 | C6 | C5 | N1 | 76.9° | 174.8° |
H6C2 | C6 | C5 | H5 | 44.2° | 64.9° |
C4 | C5 | N1 | H5 | 119.1° | 119.9° |
C5 | C4 | O4 | C3 | 122.3° | 119.9° |
C5 | C4 | O4 | H4 | 119.7° | 120.1° |
C5 | C4 | C3 | H4 | 119.8° | 120.0° |
C5 | C4 | O4 | HA | 57.8° | 180.0° |
C5 | C4 | C3 | O3 | 174.7° | 171.8° |
C5 | C4 | C3 | C2 | 62.4° | 68.3° |
C5 | C4 | C3 | H3 | 57.7° | 51.5° |
C4 | C5 | N1 | C8 | 147.3° | 162.5° |
C4 | C5 | N1 | C1 | 30.9° | 17.3° |
N1 | C5 | C4 | O4 | 175.0° | 170.2° |
N1 | C5 | C4 | C3 | 60.5° | 50.2° |
N1 | C5 | C4 | H4 | 57.6° | 69.8° |
C5 | N1 | C1 | C2 | 0.5° | 0.0° |
C5 | N1 | C8 | C1 | 178.4° | 179.9° |
C5 | N1 | C8 | C7 | 179.8° | 180.0° |
C5 | N1 | C8 | H8 | 0.2° | 0.0° |
C5 | N1 | C1 | N2 | 179.6° | 180.0° |
H5 | C5 | C4 | O4 | 63.8° | 50.3° |
H5 | C5 | C4 | C3 | 60.6° | 69.8° |
H5 | C5 | C4 | H4 | 178.8° | 170.3° |
H5 | C5 | N1 | C8 | 93.6° | 77.6° |
H5 | C5 | N1 | C1 | 88.1° | 102.5° |
O4 | C4 | C3 | H4 | 117.2° | 120.0° |
O4 | C4 | C3 | O3 | 51.7° | 51.8° |
O4 | C4 | C3 | C2 | 174.6° | 171.7° |
O4 | C4 | C3 | H3 | 65.3° | 68.4° |
C3 | C4 | O4 | HA | 64.5° | 60.1° |
C4 | C3 | O3 | C2 | 124.0° | 119.4° |
C4 | C3 | O3 | H3 | 115.8° | 120.3° |
C4 | C3 | C2 | H3 | 116.1° | 119.8° |
C4 | C3 | O3 | HB | 156.8° | 180.0° |
C4 | C3 | C2 | O2 | 153.5° | 167.8° |
C4 | C3 | C2 | C1 | 30.7° | 48.1° |
C4 | C3 | C2 | H2 | 86.4° | 71.7° |
H4 | C4 | O4 | HA | 177.5° | 59.9° |
H4 | C4 | C3 | O3 | 65.6° | 68.2° |
H4 | C4 | C3 | C2 | 57.4° | 51.7° |
H4 | C4 | C3 | H3 | 177.4° | 171.5° |
O3 | C3 | C2 | H3 | 117.5° | 120.3° |
O3 | C3 | C2 | O2 | 80.1° | 72.3° |
O3 | C3 | C2 | C1 | 157.1° | 168.0° |
O3 | C3 | C2 | H2 | 40.0° | 48.2° |
C2 | C3 | O3 | HB | 32.8° | 60.5° |
C3 | C2 | O2 | C1 | 123.5° | 119.0° |
C3 | C2 | O2 | H2 | 119.4° | 120.6° |
C3 | C2 | C1 | H2 | 119.2° | 119.8° |
C3 | C2 | O2 | HC | 167.5° | 180.0° |
C3 | C2 | C1 | N1 | 0.3° | 15.8° |
C3 | C2 | C1 | N2 | 179.2° | 164.2° |
H3 | C3 | O3 | HB | 87.4° | 59.8° |
H3 | C3 | C2 | O2 | 37.4° | 48.0° |
H3 | C3 | C2 | C1 | 85.5° | 71.8° |
H3 | C3 | C2 | H2 | 157.5° | 168.5° |
O2 | C2 | C1 | H2 | 120.0° | 120.5° |
O2 | C2 | C1 | N1 | 121.1° | 135.5° |
O2 | C2 | C1 | N2 | 60.0° | 44.5° |
C1 | C2 | O2 | HC | 69.0° | 61.0° |
C2 | C1 | N1 | C8 | 178.1° | 179.9° |
C2 | C1 | N1 | N2 | 179.1° | 180.0° |
C2 | C1 | N2 | C7 | 178.7° | 180.0° |
C2 | C1 | N2 | HD | 1.3° | 0.1° |
H2 | C2 | O2 | HC | 48.1° | 59.5° |
H2 | C2 | C1 | N1 | 118.9° | 104.0° |
H2 | C2 | C1 | N2 | 60.0° | 76.0° |
N1 | C8 | C7 | H8 | 180.0° | 179.9° |
N1 | C8 | C7 | N2 | 1.1° | 0.1° |
N1 | C8 | C7 | C9 | 179.5° | 179.9° |
C8 | N1 | C1 | N2 | 1.1° | 0.1° |
C1 | N1 | C8 | C7 | 1.3° | 0.1° |
C1 | N1 | C8 | H8 | 178.7° | 180.0° |
N1 | C1 | N2 | C7 | 0.4° | 0.1° |
N1 | C1 | N2 | HD | 179.6° | 179.9° |
C8 | C7 | N2 | C9 | 178.4° | 180.0° |
C8 | C7 | N2 | C1 | 0.4° | 0.0° |
C8 | C7 | N2 | HD | 179.6° | 179.9° |
C8 | C7 | C9 | C10 | 114.3° | 85.0° |
C8 | C7 | C9 | H9C1 | 5.2° | 35.0° |
C8 | C7 | C9 | H9C2 | 125.7° | 155.0° |
H8 | C8 | C7 | N2 | 178.9° | 180.0° |
H8 | C8 | C7 | C9 | 0.5° | 0.0° |
C7 | N2 | C1 | HD | 180.0° | 179.9° |
N2 | C7 | C9 | C10 | 63.8° | 95.0° |
N2 | C7 | C9 | H9C1 | 176.7° | 145.0° |
N2 | C7 | C9 | H9C2 | 56.2° | 25.0° |
C9 | C7 | N2 | C1 | 178.9° | 180.0° |
C9 | C7 | N2 | HD | 1.1° | 0.1° |
C7 | C9 | C10 | H9C1 | 119.5° | 120.0° |
C7 | C9 | C10 | H9C2 | 120.0° | 120.0° |
C7 | C9 | H9C1 | H9C2 | 119.7° | 120.0° |
C7 | C9 | C10 | C14 | 167.3° | 180.0° |
C7 | C9 | C10 | H101 | 51.1° | 60.0° |
C7 | C9 | C10 | H102 | 72.7° | 60.0° |
C10 | C9 | H9C1 | H9C2 | 119.7° | 120.0° |
C9 | C10 | C14 | H101 | 116.3° | 120.0° |
C9 | C10 | C14 | H102 | 120.0° | 120.0° |
C9 | C10 | H101 | H102 | 117.7° | 120.0° |
C9 | C10 | C14 | C13 | 170.6° | 90.0° |
C9 | C10 | C14 | C15 | 9.5° | 90.3° |
H9C1 | C9 | C10 | C14 | 73.2° | 60.0° |
H9C1 | C9 | C10 | H101 | 170.6° | NaN° |
H9C1 | C9 | C10 | H102 | 46.8° | 60.0° |
H9C2 | C9 | C10 | C14 | 47.3° | 60.0° |
H9C2 | C9 | C10 | H101 | 68.9° | 60.0° |
H9C2 | C9 | C10 | H102 | 167.3° | NaN° |
C14 | C10 | H101 | H102 | 117.7° | 120.0° |
C10 | C14 | C13 | C15 | 179.9° | 179.7° |
C10 | C14 | C13 | C12 | 179.9° | 180.0° |
C10 | C14 | C13 | H13 | 0.2° | 0.1° |
C10 | C14 | C15 | C16 | 180.0° | 179.8° |
C10 | C14 | C15 | H15 | 0.0° | 0.2° |
H101 | C10 | C14 | C13 | 73.1° | 30.0° |
H101 | C10 | C14 | C15 | 106.8° | 149.7° |
H102 | C10 | C14 | C13 | 50.6° | 150.0° |
H102 | C10 | C14 | C15 | 129.4° | 29.7° |
C14 | C13 | C12 | H13 | 180.0° | 179.9° |
C14 | C13 | C12 | C11 | 0.2° | 0.1° |
C14 | C13 | C12 | H12 | 179.8° | 180.0° |
C13 | C14 | C15 | C16 | 0.1° | 0.5° |
C13 | C14 | C15 | H15 | 179.9° | 179.9° |
C15 | C14 | C13 | C12 | 0.2° | 0.3° |
C15 | C14 | C13 | H13 | 179.8° | 179.8° |
C14 | C15 | C16 | H15 | 180.0° | 179.6° |
C14 | C15 | C16 | C11 | 0.1° | 0.4° |
C14 | C15 | C16 | H16 | 179.9° | 179.7° |
C13 | C12 | C11 | H12 | 180.0° | 179.9° |
C13 | C12 | C11 | C16 | 0.0° | 0.0° |
C13 | C12 | C11 | H11 | 180.0° | 179.9° |
H13 | C13 | C12 | C11 | 179.8° | 180.0° |
H13 | C13 | C12 | H12 | 0.2° | 0.1° |
C12 | C11 | C16 | C15 | 0.1° | 0.2° |
C12 | C11 | C16 | H11 | 180.0° | 179.9° |
C12 | C11 | C16 | H16 | 179.9° | 179.9° |
H12 | C12 | C11 | C16 | 180.0° | 180.0° |
H12 | C12 | C11 | H11 | 0.0° | 0.1° |
C15 | C16 | C11 | H16 | 180.0° | 179.9° |
C15 | C16 | C11 | H11 | 179.9° | 179.9° |
H15 | C15 | C16 | C11 | 179.9° | 180.0° |
H15 | C15 | C16 | H16 | 0.1° | 0.1° |
H16 | C16 | C11 | H11 | 0.1° | 0.0° |