Obsolete: PG7
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| P | OP3 | sing | 1.61Å | 14.23Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.41Å | |
| C1' | N9 | sing | 1.47Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | C3' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| C3' | C4' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| N2 | C2 | sing | 1.38Å | 1.35Å | |
| N2 | HN2 | sing | 0.97Å | 1.00Å | |
| N2 | H21 | sing | 0.97Å | 1.00Å | |
| O6 | C6 | sing | 1.35Å | 1.36Å | |
| O6 | H6 | sing | 0.97Å | 0.95Å | |
| C6 | C5 | sing | 1.40Å | 1.42Å | Aromatic |
| C6 | N1 | doub | 1.33Å | 1.39Å | Aromatic |
| C5 | N7 | sing | 1.36Å | 1.39Å | Aromatic |
| C5 | C4 | doub | 1.41Å | 1.37Å | Aromatic |
| N7 | C8 | doub | 1.30Å | 1.30Å | Aromatic |
| C8 | N9 | sing | 1.36Å | 1.37Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| C4 | N3 | sing | 1.33Å | 1.36Å | Aromatic |
| N3 | C2 | doub | 1.32Å | 1.35Å | Aromatic |
| C2 | N1 | sing | 1.33Å | 1.39Å | Aromatic |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.7° | 109.5° |
| OP1 | P | O5' | 108.4° | 109.5° |
| OP1 | P | OP3 | 141.6° | 109.5° |
| OP2 | P | O5' | 108.4° | 109.5° |
| OP2 | P | OP3 | 98.1° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| O5' | P | OP3 | 47.6° | 109.5° |
| P | O5' | C5' | 121.5° | 123.0° |
| P | OP3 | HOP3 | 141.6° | 114.0° |
| O5' | C5' | C4' | 109.8° | 109.5° |
| O5' | C5' | H5' | 109.3° | 109.5° |
| O5' | C5' | H5'' | 109.3° | 109.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| O3' | C3' | C2' | 114.2° | 110.9° |
| O3' | C3' | C4' | 110.3° | 110.9° |
| O3' | C3' | H3' | 103.7° | 110.8° |
| C2' | C1' | O4' | 105.6° | 107.3° |
| C2' | C1' | N9 | 110.9° | 109.9° |
| C2' | C1' | H1' | 111.5° | 109.9° |
| C1' | C2' | C3' | 105.0° | 104.2° |
| C1' | C2' | H2' | 111.0° | 110.4° |
| C1' | C2' | H2'' | 111.0° | 110.5° |
| O4' | C1' | N9 | 110.8° | 109.9° |
| O4' | C1' | H1' | 111.6° | 109.9° |
| C1' | O4' | C4' | 106.5° | 107.0° |
| N9 | C1' | H1' | 106.4° | 109.9° |
| C1' | N9 | C8 | 128.1° | 126.2° |
| C1' | N9 | C4 | 126.7° | 126.3° |
| C3' | C2' | H2' | 111.0° | 110.5° |
| C3' | C2' | H2'' | 111.0° | 110.5° |
| C2' | C3' | C4' | 102.6° | 102.1° |
| C2' | C3' | H3' | 111.3° | 110.9° |
| H2' | C2' | H2'' | 107.9° | 110.6° |
| C4' | C3' | H3' | 115.1° | 110.9° |
| C3' | C4' | C5' | 113.0° | 110.6° |
| C3' | C4' | O4' | 105.5° | 103.4° |
| C3' | C4' | H4' | 110.4° | 110.6° |
| C5' | C4' | O4' | 111.3° | 110.6° |
| C5' | C4' | H4' | 104.6° | 110.6° |
| C4' | C5' | H5' | 109.4° | 109.5° |
| C4' | C5' | H5'' | 109.4° | 109.5° |
| O4' | C4' | H4' | 112.2° | 110.8° |
| H5' | C5' | H5'' | 109.6° | 109.4° |
| C2 | N2 | HN2 | 109.5° | 120.0° |
| C2 | N2 | H21 | 109.5° | 120.0° |
| N2 | C2 | N3 | 117.0° | 118.9° |
| N2 | C2 | N1 | 121.3° | 118.9° |
| HN2 | N2 | H21 | 109.5° | 120.0° |
| C6 | O6 | H6 | 109.5° | 114.0° |
| O6 | C6 | C5 | 123.1° | 120.7° |
| O6 | C6 | N1 | 122.6° | 120.7° |
| C5 | C6 | N1 | 114.1° | 118.6° |
| C6 | C5 | N7 | 130.7° | 134.6° |
| C6 | C5 | C4 | 118.4° | 118.3° |
| C6 | N1 | C2 | 124.2° | 121.2° |
| N7 | C5 | C4 | 110.9° | 107.1° |
| C5 | N7 | C8 | 103.5° | 109.4° |
| C5 | C4 | N9 | 106.0° | 106.0° |
| C5 | C4 | N3 | 127.1° | 119.1° |
| N7 | C8 | N9 | 114.4° | 110.0° |
| N7 | C8 | H8 | 122.8° | 125.0° |
| N9 | C8 | H8 | 122.8° | 125.1° |
| C8 | N9 | C4 | 105.2° | 107.5° |
| N9 | C4 | N3 | 127.0° | 134.8° |
| C4 | N3 | C2 | 114.5° | 120.5° |
| N3 | C2 | N1 | 121.7° | 122.2° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 124.9° | 120.0° |
| OP1 | P | OP2 | OP3 | 172.8° | 120.0° |
| OP1 | P | O5' | OP3 | 144.6° | 120.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
| OP1 | P | O5' | C5' | 40.2° | 55.1° |
| OP1 | P | OP3 | HOP3 | 179.9° | 60.0° |
| OP2 | P | O5' | OP3 | 84.1° | 120.0° |
| OP2 | P | O5' | C5' | 171.5° | 65.0° |
| OP2 | P | OP3 | HOP3 | 10.2° | 60.0° |
| O5' | P | OP2 | HOP2 | 124.9° | 60.0° |
| P | O5' | C5' | C4' | 169.7° | 180.0° |
| P | O5' | C5' | H5' | 70.3° | 59.9° |
| P | O5' | C5' | H5'' | 49.7° | 60.0° |
| O5' | P | OP3 | HOP3 | 117.7° | 180.0° |
| OP3 | P | OP2 | HOP2 | 172.8° | 60.0° |
| OP3 | P | O5' | C5' | 104.4° | 175.0° |
| O5' | C5' | C4' | C3' | 65.8° | 175.0° |
| O5' | C5' | C4' | H5' | 120.0° | 120.1° |
| O5' | C5' | C4' | H5'' | 120.0° | 120.0° |
| O5' | C5' | C4' | O4' | 52.7° | 71.0° |
| O5' | C5' | C4' | H4' | 174.1° | 52.1° |
| O5' | C5' | H5' | H5'' | 119.8° | 120.0° |
| O3' | C3' | C2' | C1' | 124.8° | 139.0° |
| O3' | C3' | C2' | C4' | 119.4° | 118.1° |
| O3' | C3' | C2' | H3' | 117.0° | 123.6° |
| O3' | C3' | C2' | H2' | 4.8° | 20.4° |
| O3' | C3' | C2' | H2'' | 115.2° | 102.2° |
| O3' | C3' | C4' | H3' | 116.9° | 123.6° |
| O3' | C3' | C4' | C5' | 89.4° | 86.3° |
| O3' | C3' | C4' | O4' | 148.8° | 155.2° |
| O3' | C3' | C4' | H4' | 27.4° | 36.6° |
| HO3' | O3' | C3' | C2' | 180.0° | 61.5° |
| HO3' | O3' | C3' | C4' | 65.1° | 174.2° |
| HO3' | O3' | C3' | H3' | 58.7° | 62.1° |
| C2' | C1' | O4' | N9 | 120.2° | 119.4° |
| C2' | C1' | O4' | H1' | 121.4° | 119.5° |
| C2' | C1' | N9 | H1' | 121.5° | 121.1° |
| C1' | C2' | C3' | H2' | 120.0° | 118.6° |
| C1' | C2' | C3' | H2'' | 120.0° | 118.7° |
| C1' | C2' | H2' | H2'' | 121.8° | 122.7° |
| C1' | C2' | C3' | C4' | 5.5° | 20.9° |
| C1' | C2' | C3' | H3' | 118.1° | 97.4° |
| C2' | C1' | O4' | C4' | 35.7° | 26.5° |
| C2' | C1' | N9 | C8 | 73.9° | 95.0° |
| C2' | C1' | N9 | C4 | 105.9° | 85.0° |
| O4' | C1' | N9 | H1' | 121.5° | 121.1° |
| O4' | C1' | C2' | C3' | 17.5° | 2.0° |
| O4' | C1' | C2' | H2' | 137.5° | 120.7° |
| O4' | C1' | C2' | H2'' | 102.5° | 116.7° |
| C1' | O4' | C4' | C3' | 39.7° | 40.1° |
| C1' | O4' | C4' | C5' | 162.6° | 158.5° |
| C1' | O4' | C4' | H4' | 80.6° | 78.5° |
| O4' | C1' | N9 | C8 | 43.1° | 22.9° |
| O4' | C1' | N9 | C4 | 137.1° | 157.2° |
| N9 | C1' | C2' | C3' | 137.6° | 121.5° |
| N9 | C1' | C2' | H2' | 102.4° | 119.9° |
| N9 | C1' | C2' | H2'' | 17.6° | 2.8° |
| N9 | C1' | O4' | C4' | 155.9° | 146.0° |
| C1' | N9 | C4 | C5 | 177.8° | 179.9° |
| C1' | N9 | C8 | N7 | 178.2° | 180.0° |
| C1' | N9 | C8 | C4 | 179.8° | 180.0° |
| C1' | N9 | C8 | H8 | 1.8° | 0.0° |
| C1' | N9 | C4 | N3 | 1.0° | 0.0° |
| H1' | C1' | C2' | C3' | 104.0° | 117.4° |
| H1' | C1' | C2' | H2' | 16.0° | 1.2° |
| H1' | C1' | C2' | H2'' | 136.0° | 123.9° |
| H1' | C1' | O4' | C4' | 85.7° | 92.9° |
| H1' | C1' | N9 | C8 | 164.7° | 143.9° |
| H1' | C1' | N9 | C4 | 15.6° | 36.1° |
| C3' | C2' | H2' | H2'' | 121.9° | 122.6° |
| C2' | C3' | C4' | H3' | 121.0° | 118.2° |
| C2' | C3' | C4' | C5' | 148.5° | 155.5° |
| C2' | C3' | C4' | O4' | 26.7° | 37.0° |
| C2' | C3' | C4' | H4' | 94.7° | 81.6° |
| H2' | C2' | C3' | C4' | 114.5° | 97.7° |
| H2' | C2' | C3' | H3' | 121.9° | 144.0° |
| H2'' | C2' | C3' | C4' | 125.4° | 139.6° |
| H2'' | C2' | C3' | H3' | 1.8° | 21.4° |
| C3' | C4' | C5' | O4' | 118.5° | 114.0° |
| C3' | C4' | C5' | H4' | 120.2° | 122.9° |
| C3' | C4' | O4' | H4' | 120.3° | 118.5° |
| C3' | C4' | C5' | H5' | 54.2° | 64.9° |
| C3' | C4' | C5' | H5'' | 174.3° | 55.0° |
| H3' | C3' | C4' | C5' | 27.5° | 37.3° |
| H3' | C3' | C4' | O4' | 94.3° | 81.2° |
| H3' | C3' | C4' | H4' | 144.3° | 160.2° |
| C5' | C4' | O4' | H4' | 116.8° | 123.0° |
| C4' | C5' | H5' | H5'' | 119.9° | 120.0° |
| O4' | C4' | C5' | H5' | 172.7° | 49.1° |
| O4' | C4' | C5' | H5'' | 67.2° | 169.0° |
| H4' | C4' | C5' | H5' | 66.0° | 172.2° |
| H4' | C4' | C5' | H5'' | 54.1° | 67.9° |
| C2 | N2 | HN2 | H21 | 120.0° | 179.9° |
| N2 | C2 | N1 | C6 | 178.5° | 179.8° |
| N2 | C2 | N3 | C4 | 179.7° | 180.0° |
| N2 | C2 | N3 | N1 | 178.0° | 179.8° |
| HN2 | N2 | C2 | N3 | 0.0° | 0.0° |
| HN2 | N2 | C2 | N1 | 178.0° | 179.8° |
| H21 | N2 | C2 | N3 | 120.0° | 180.0° |
| H21 | N2 | C2 | N1 | 62.0° | 0.2° |
| O6 | C6 | C5 | N1 | 174.8° | 179.8° |
| O6 | C6 | C5 | N7 | 5.0° | 0.1° |
| O6 | C6 | C5 | C4 | 175.5° | 180.0° |
| O6 | C6 | N1 | C2 | 175.5° | 179.8° |
| H6 | O6 | C6 | C5 | 174.4° | 90.0° |
| H6 | O6 | C6 | N1 | 0.0° | 90.2° |
| C6 | C5 | N7 | C4 | 179.6° | 179.9° |
| C6 | C5 | N7 | C8 | 179.4° | 180.0° |
| C6 | C5 | C4 | N9 | 178.1° | 180.0° |
| C6 | C5 | C4 | N3 | 0.6° | 0.1° |
| C5 | C6 | N1 | C2 | 0.7° | 0.4° |
| N1 | C6 | C5 | N7 | 179.8° | 179.8° |
| N1 | C6 | C5 | C4 | 0.6° | 0.2° |
| C6 | N1 | C2 | N3 | 0.5° | 0.4° |
| C5 | N7 | C8 | N9 | 0.6° | 0.0° |
| C5 | N7 | C8 | H8 | 179.4° | 180.0° |
| N7 | C5 | C4 | N9 | 2.2° | 0.0° |
| N7 | C5 | C4 | N3 | 179.0° | 180.0° |
| C4 | C5 | N7 | C8 | 1.0° | 0.0° |
| C5 | C4 | N9 | C8 | 2.4° | 0.0° |
| C5 | C4 | N9 | N3 | 178.8° | 179.9° |
| C5 | C4 | N3 | C2 | 1.8° | 0.1° |
| N7 | C8 | N9 | H8 | 180.0° | 180.0° |
| N7 | C8 | N9 | C4 | 2.0° | 0.0° |
| C8 | N9 | C4 | N3 | 178.8° | 180.0° |
| H8 | C8 | N9 | C4 | 178.0° | 180.0° |
| N9 | C4 | N3 | C2 | 176.7° | 180.0° |
| C4 | N3 | C2 | N1 | 1.7° | 0.2° |
