PF5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.44Å | 1.49Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | C | sing | 1.52Å | 1.53Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | HA | sing | 1.10Å | 1.10Å | |
| CB | CG | sing | 1.51Å | 1.51Å | |
| CB | HB2 | sing | 1.10Å | 1.10Å | |
| CB | HB3 | sing | 1.10Å | 1.10Å | |
| CG | CD2 | sing | 1.39Å | 1.40Å | Aromatic |
| CG | CD1 | doub | 1.39Å | 1.40Å | Aromatic |
| CD1 | CE1 | sing | 1.39Å | 1.40Å | Aromatic |
| CD1 | FD1 | sing | 1.34Å | 1.35Å | |
| CD2 | FD2 | sing | 1.34Å | 1.35Å | |
| CD2 | CE2 | doub | 1.39Å | 1.40Å | Aromatic |
| CE1 | CZ | doub | 1.39Å | 1.40Å | Aromatic |
| CE1 | FE1 | sing | 1.34Å | 1.35Å | |
| CE2 | FE2 | sing | 1.34Å | 1.35Å | |
| CE2 | CZ | sing | 1.39Å | 1.40Å | Aromatic |
| CZ | FZ | sing | 1.34Å | 1.35Å | |
| C | O | doub | 1.23Å | 1.22Å | |
| C | OXT | sing | 1.36Å | 1.36Å | |
| OXT | HXT | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.5° | 119.0° |
| CA | N | H2 | 109.5° | 119.0° |
| N | CA | C | 110.6° | 111.1° |
| N | CA | CB | 108.6° | 111.1° |
| N | CA | HA | 109.7° | 106.3° |
| H | N | H2 | 109.4° | 120.6° |
| C | CA | CB | 110.6° | 109.9° |
| C | CA | HA | 107.7° | 106.9° |
| CA | C | O | 121.1° | 123.0° |
| CA | C | OXT | 118.4° | 114.9° |
| CB | CA | HA | 109.7° | 111.4° |
| CA | CB | CG | 107.5° | 113.0° |
| CA | CB | HB2 | 110.1° | 110.4° |
| CA | CB | HB3 | 110.6° | 110.2° |
| CG | CB | HB2 | 110.1° | 108.1° |
| CG | CB | HB3 | 110.5° | 109.7° |
| CB | CG | CD2 | 119.7° | 119.4° |
| CB | CG | CD1 | 120.1° | 119.3° |
| HB2 | CB | HB3 | 107.9° | 105.2° |
| CD2 | CG | CD1 | 120.1° | 121.3° |
| CG | CD2 | FD2 | 120.0° | 121.1° |
| CG | CD2 | CE2 | 120.0° | 119.4° |
| CG | CD1 | CE1 | 120.0° | 119.3° |
| CG | CD1 | FD1 | 120.0° | 121.1° |
| CE1 | CD1 | FD1 | 120.0° | 119.6° |
| CD1 | CE1 | CZ | 120.0° | 120.0° |
| CD1 | CE1 | FE1 | 120.0° | 120.0° |
| FD2 | CD2 | CE2 | 120.0° | 119.5° |
| CD2 | CE2 | FE2 | 120.0° | 120.0° |
| CD2 | CE2 | CZ | 119.9° | 120.0° |
| CZ | CE1 | FE1 | 120.0° | 120.0° |
| CE1 | CZ | CE2 | 120.0° | 120.0° |
| CE1 | CZ | FZ | 120.0° | 120.0° |
| FE2 | CE2 | CZ | 120.1° | 120.0° |
| CE2 | CZ | FZ | 120.0° | 120.0° |
| O | C | OXT | 120.3° | 122.2° |
| C | OXT | HXT | 109.5° | 114.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 120.0° | 166.4° |
| N | CA | C | CB | 120.3° | 123.5° |
| N | CA | C | HA | 119.8° | 115.5° |
| N | CA | CB | HA | 119.9° | 118.3° |
| N | CA | CB | CG | 52.2° | 158.2° |
| N | CA | CB | HB2 | 67.8° | 37.1° |
| N | CA | CB | HB3 | 173.0° | 78.7° |
| N | CA | C | O | 161.9° | 34.5° |
| N | CA | C | OXT | 13.8° | 145.1° |
| H | N | CA | C | 88.0° | 92.9° |
| H | N | CA | CB | 150.5° | 144.3° |
| H | N | CA | HA | 30.7° | 23.0° |
| H2 | N | CA | C | 32.0° | 100.5° |
| H2 | N | CA | CB | 89.5° | 22.3° |
| H2 | N | CA | HA | 150.6° | 143.6° |
| C | CA | CB | HA | 118.6° | 118.3° |
| C | CA | CB | CG | 173.7° | 78.3° |
| C | CA | CB | HB2 | 53.7° | 160.6° |
| C | CA | CB | HB3 | 65.5° | 44.8° |
| CA | C | O | OXT | 175.5° | 179.5° |
| CA | C | OXT | HXT | 175.7° | 179.6° |
| CA | CB | CG | HB2 | 120.0° | 122.4° |
| CA | CB | CG | HB3 | 120.8° | 123.4° |
| CA | CB | HB2 | HB3 | 120.8° | 118.9° |
| CA | CB | CG | CD2 | 85.9° | 90.0° |
| CA | CB | CG | CD1 | 90.3° | 90.0° |
| CB | CA | C | O | 77.8° | 89.0° |
| CB | CA | C | OXT | 106.6° | 91.5° |
| HA | CA | CB | CG | 67.7° | 40.0° |
| HA | CA | CB | HB2 | 172.3° | 81.2° |
| HA | CA | CB | HB3 | 53.1° | 163.0° |
| HA | CA | C | O | 42.0° | 150.0° |
| HA | CA | C | OXT | 133.6° | 29.5° |
| CG | CB | HB2 | HB3 | 120.8° | 117.1° |
| CB | CG | CD2 | CD1 | 176.2° | 180.0° |
| CB | CG | CD1 | CE1 | 175.5° | 180.0° |
| CB | CG | CD1 | FD1 | 4.1° | 0.0° |
| CB | CG | CD2 | FD2 | 3.0° | 0.1° |
| CB | CG | CD2 | CE2 | 177.2° | 180.0° |
| HB2 | CB | CG | CD2 | 154.1° | 147.6° |
| HB2 | CB | CG | CD1 | 29.7° | 32.5° |
| HB3 | CB | CG | CD2 | 34.9° | 33.4° |
| HB3 | CB | CG | CD1 | 148.9° | 146.7° |
| CD2 | CG | CD1 | CE1 | 0.7° | 0.0° |
| CD2 | CG | CD1 | FD1 | 179.7° | 180.0° |
| CG | CD2 | FD2 | CE2 | 179.9° | 180.0° |
| CG | CD2 | CE2 | FE2 | 178.1° | 179.9° |
| CG | CD2 | CE2 | CZ | 2.1° | 0.0° |
| CG | CD1 | CE1 | FD1 | 179.6° | 180.0° |
| CD1 | CG | CD2 | FD2 | 179.2° | 180.0° |
| CD1 | CG | CD2 | CE2 | 0.9° | 0.0° |
| CG | CD1 | CE1 | CZ | 1.2° | 0.0° |
| CG | CD1 | CE1 | FE1 | 179.2° | 180.0° |
| CD1 | CE1 | CZ | FE1 | 179.7° | 180.0° |
| CD1 | CE1 | CZ | CE2 | 0.0° | 0.0° |
| CD1 | CE1 | CZ | FZ | 179.7° | 180.0° |
| FD1 | CD1 | CE1 | CZ | 179.2° | 180.0° |
| FD1 | CD1 | CE1 | FE1 | 0.5° | 0.0° |
| FD2 | CD2 | CE2 | FE2 | 1.7° | 0.0° |
| FD2 | CD2 | CE2 | CZ | 178.1° | 180.0° |
| CD2 | CE2 | CZ | CE1 | 1.6° | 0.0° |
| CD2 | CE2 | FE2 | CZ | 179.8° | 180.0° |
| CD2 | CE2 | CZ | FZ | 178.1° | 180.0° |
| CE1 | CZ | CE2 | FE2 | 178.6° | 179.9° |
| CE1 | CZ | CE2 | FZ | 179.7° | 179.9° |
| FE1 | CE1 | CZ | CE2 | 179.7° | 180.0° |
| FE1 | CE1 | CZ | FZ | 0.6° | 0.1° |
| FE2 | CE2 | CZ | FZ | 1.7° | 0.0° |
| O | C | OXT | HXT | 0.0° | 0.1° |
