English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

PEZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C1	sing	1.34Å	1.29Å
O1	HO1	sing	0.97Å	0.95Å
C1	O2'	doub	1.21Å	1.19Å
C1	C2	sing	1.51Å	1.55Å
C2	O2	sing	1.43Å	1.42Å
C2	C3	sing	1.53Å	1.36Å
C2	H2	sing	1.09Å	1.11Å
O2	P	sing	1.61Å	1.59Å
P	O1P	doub	1.48Å	1.46Å
P	O2P	sing	1.61Å	1.50Å
P	O3P	sing	1.61Å	1.56Å
O2P	H2P	sing	0.97Å	0.95Å
O3P	H3P	sing	0.97Å	0.95Å
C3	C4	sing	1.53Å	1.46Å
C3	H31	sing	1.09Å	1.11Å
C3	H32	sing	1.09Å	1.11Å
C4	H41	sing	1.09Å	1.11Å
C4	H42	sing	1.09Å	1.12Å
C4	H43	sing	1.09Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	O1	HO1	121.9°	120.0°
O1	C1	O2'	121.9°	120.0°
O1	C1	C2	113.1°	120.0°
O2'	C1	C2	125.0°	120.0°
C1	C2	O2	106.8°	109.5°
C1	C2	C3	128.9°	109.5°
C1	C2	H2	114.8°	109.4°
O2	C2	C3	124.3°	109.5°
O2	C2	H2	137.5°	109.4°
C2	O2	P	132.3°	106.9°
C3	C2	H2	16.8°	109.5°
C2	C3	C4	143.6°	109.5°
C2	C3	H31	100.7°	109.5°
C2	C3	H32	100.7°	109.4°
O2	P	O1P	106.5°	109.5°
O2	P	O2P	106.7°	109.5°
O2	P	O3P	102.4°	109.4°
O1P	P	O2P	123.5°	109.5°
O1P	P	O3P	108.7°	109.5°
O2P	P	O3P	107.1°	109.4°
P	O2P	H2P	106.7°	106.8°
P	O3P	H3P	102.4°	106.8°
C4	C3	H31	100.7°	109.5°
C4	C3	H32	100.8°	109.5°
C3	C4	H41	143.6°	109.5°
C3	C4	H42	100.8°	109.4°
C3	C4	H43	100.8°	109.4°
H31	C3	H32	106.7°	109.5°
H41	C4	H42	100.7°	109.5°
H41	C4	H43	100.8°	109.5°
H42	C4	H43	106.6°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	O2'	C2	179.6°	180.0°
O1	C1	C2	O2	179.9°	180.0°
O1	C1	C2	C3	2.1°	59.9°
O1	C1	C2	H2	8.8°	60.1°
HO1	O1	C1	O2'	180.0°	0.0°
HO1	O1	C1	C2	0.4°	180.0°
O2'	C1	C2	O2	0.5°	0.1°
O2'	C1	C2	C3	177.5°	120.0°
O2'	C1	C2	H2	171.6°	120.0°
C1	C2	O2	C3	178.1°	120.1°
C1	C2	O2	H2	168.0°	119.9°
C1	C2	C3	H2	36.6°	120.0°
C1	C2	O2	P	177.6°	120.0°
C1	C2	C3	C4	179.7°	180.0°
C1	C2	C3	H31	55.0°	59.9°
C1	C2	C3	H32	54.5°	60.1°
O2	C2	C3	H2	145.8°	120.0°
C2	O2	P	O1P	65.6°	59.9°
C2	O2	P	O2P	68.1°	180.0°
C2	O2	P	O3P	179.6°	60.1°
O2	C2	C3	C4	2.1°	60.0°
O2	C2	C3	H31	127.4°	180.0°
O2	C2	C3	H32	123.1°	60.0°
C3	C2	O2	P	0.5°	119.9°
C2	C3	C4	H31	125.2°	120.1°
C2	C3	C4	H32	125.2°	119.9°
C2	C3	H31	H32	104.8°	120.0°
C2	C3	C4	H41	179.9°	180.0°
C2	C3	C4	H42	54.7°	59.9°
C2	C3	C4	H43	54.7°	60.0°
H2	C2	O2	P	14.4°	0.1°
H2	C2	C3	C4	143.6°	60.0°
H2	C2	C3	H31	18.4°	60.0°
H2	C2	C3	H32	91.1°	180.0°
O2	P	O1P	O2P	123.8°	120.1°
O2	P	O1P	O3P	109.6°	119.9°
O2	P	O2P	O3P	109.0°	119.9°
O2	P	O2P	H2P	180.0°	179.9°
O2	P	O3P	H3P	180.0°	60.0°
O1P	P	O2P	O3P	127.3°	120.0°
O1P	P	O2P	H2P	56.3°	60.0°
O1P	P	O3P	H3P	67.6°	180.0°
O2P	P	O3P	H3P	68.0°	60.0°
O3P	P	O2P	H2P	70.9°	60.0°
C4	C3	H31	H32	104.8°	120.0°
C3	C4	H41	H42	125.2°	120.0°
C3	C4	H41	H43	125.4°	120.0°
C3	C4	H42	H43	104.8°	119.9°
H31	C3	C4	H41	54.8°	59.9°
H31	C3	C4	H42	179.9°	180.0°
H31	C3	C4	H43	70.5°	60.1°
H32	C3	C4	H41	54.7°	60.0°
H32	C3	C4	H42	70.5°	60.0°
H32	C3	C4	H43	179.9°	179.9°
H41	C4	H42	H43	104.8°	120.0°

247536

PDB entries from 2026-01-14

PDB statistics

PDBj update info

Contact PDBj

numon