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SummaryGeometryRelated PDB entries

PEL

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C1'C2'doub1.38Å1.43ÅAromatic
C1'C6'sing1.38Å1.41ÅAromatic
C1'CAsing1.51Å1.51Å
C2'C3'sing1.38Å1.42ÅAromatic
C2'H2sing1.08Å1.10Å
C3'C4'doub1.38Å1.42ÅAromatic
C3'H3sing1.08Å1.10Å
C4'C5'sing1.38Å1.41ÅAromatic
C4'H4sing1.08Å1.10Å
C5'C6'doub1.38Å1.42ÅAromatic
C5'H5sing1.08Å1.10Å
C6'H6sing1.08Å1.10Å
CACsing1.53Å1.53Å
CAHA1sing1.09Å1.12Å
CAHA2sing1.09Å1.11Å
COXTsing1.43Å1.44Å
CH11sing1.09Å1.12Å
CH12sing1.09Å1.11Å
OXTHXTsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C2'C1'C6'119.5°120.0°
C2'C1'CA120.1°120.0°
C1'C2'C3'121.4°120.0°
C1'C2'H2119.6°120.0°
C6'C1'CA120.0°120.0°
C1'C6'C5'119.4°120.0°
C1'C6'H6120.2°120.0°
C1'CAC110.5°109.5°
C1'CAHA1111.8°109.5°
C1'CAHA2111.8°109.5°
C3'C2'H2119.0°120.0°
C2'C3'C4'118.0°120.0°
C2'C3'H3120.8°120.0°
C4'C3'H3121.2°120.0°
C3'C4'C5'120.8°120.0°
C3'C4'H4120.1°120.0°
C5'C4'H4119.1°120.0°
C4'C5'C6'120.5°120.0°
C4'C5'H5119.4°120.0°
C6'C5'H5120.1°120.0°
C5'C6'H6120.4°120.0°
CCAHA1111.8°109.5°
CCAHA2111.9°109.4°
CACOXT107.7°109.5°
CACH11112.8°109.5°
CACH12112.8°109.4°
HA1CAHA298.5°109.4°
OXTCH11112.9°109.5°
OXTCH12112.9°109.5°
COXTHXT107.7°106.7°
H11CH1297.6°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C2'C1'C6'CA172.8°179.7°
C1'C2'C3'H2180.0°180.0°
C1'C2'C3'C4'1.0°0.0°
C1'C2'C3'H3179.0°180.0°
C2'C1'C6'C5'1.0°0.4°
C2'C1'C6'H6179.0°180.0°
C2'C1'CAC126.4°90.0°
C2'C1'CAHA1108.3°30.0°
C2'C1'CAHA21.1°150.0°
C6'C1'C2'C3'1.3°0.2°
C6'C1'C2'H2178.6°179.8°
C1'C6'C5'C4'5.7°0.3°
C1'C6'C5'H6180.0°179.7°
C1'C6'C5'H5174.3°179.7°
C6'C1'CAC46.4°90.2°
C6'C1'CAHA178.9°149.7°
C6'C1'CAHA2171.7°29.7°
CAC1'C2'C3'171.5°180.0°
CAC1'C2'H28.6°0.0°
CAC1'C6'C5'173.8°179.9°
CAC1'C6'H66.2°0.2°
C1'CACHA1125.3°120.1°
C1'CACHA2125.3°120.0°
C1'CAHA1HA2117.7°120.0°
C1'CACOXT122.2°180.0°
C1'CACH113.0°59.9°
C1'CACH12112.5°60.0°
C2'C3'C4'H3180.0°180.0°
C2'C3'C4'C5'5.7°0.0°
C2'C3'C4'H4174.4°179.9°
H2C2'C3'C4'179.1°180.0°
H2C2'C3'H31.0°0.0°
C3'C4'C5'H4180.0°179.9°
C3'C4'C5'C6'8.1°0.1°
C3'C4'C5'H5171.9°179.9°
H3C3'C4'C5'174.3°180.0°
H3C3'C4'H45.6°0.1°
C4'C5'C6'H5180.0°180.0°
C4'C5'C6'H6174.4°180.0°
H4C4'C5'C6'171.9°179.9°
H4C4'C5'H58.1°0.0°
H5C5'C6'H65.7°0.1°
CCAHA1HA2117.7°119.9°
CACOXTH11125.2°120.1°
CACOXTH12125.2°119.9°
CACH11H12118.8°119.9°
CACOXTHXT180.0°180.0°
HA1CACOXT112.5°59.9°
HA1CACH11122.2°180.0°
HA1CACH1212.8°60.1°
HA2CACOXT3.1°60.0°
HA2CACH11128.3°60.1°
HA2CACH12122.2°180.0°
OXTCH11H12118.8°120.0°
H11COXTHXT54.8°59.9°
H12COXTHXT54.8°60.0°

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PDB entries from 2024-07-10

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