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PD7

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C''O''doub1.21Å1.21Å
C1''C''sing1.51Å1.53Å
C''O3sing1.34Å1.44Å
C2''C1''sing1.53Å1.54Å
C1''H1''sing1.09Å1.10Å
C1''H1AAsing1.09Å1.10Å
C2''C3''sing1.53Å1.54Å
C2''H2''sing1.09Å1.10Å
C2''H2AAsing1.09Å1.10Å
C4''C3''sing1.53Å1.54Å
C3''H3''sing1.09Å1.10Å
C3''H3AAsing1.09Å1.10Å
C4''C5''sing1.53Å1.53Å
C4''H4''sing1.09Å1.10Å
C4''H4AAsing1.09Å1.10Å
C6''C5''sing1.53Å1.52Å
C5''H5''sing1.09Å1.10Å
C5''H5AAsing1.09Å1.10Å
C6''H6''sing1.09Å1.10Å
C6''H6AAsing1.09Å1.10Å
C6''H6ABsing1.09Å1.10Å
O3C3sing1.45Å1.43Å
C2C3sing1.53Å1.52Å
C3H3sing1.09Å1.10Å
C3H3Asing1.09Å1.10Å
O2C2sing1.45Å1.42Å
C2C1sing1.53Å1.53Å
C2H2sing1.09Å1.10Å
C1O3Psing1.43Å1.43Å
C1H1sing1.09Å1.10Å
C1H1Asing1.09Å1.10Å
O3PPsing1.61Å1.63Å
O1PPdoub1.48Å1.52Å
PO2Psing1.61Å1.50Å
PO4Psing1.61Å1.52Å
O4PHO4Psing0.97Å0.95Å
O2PHO2Psing0.97Å0.95Å
C'O2sing1.34Å1.44Å
C1'C'sing1.51Å1.52Å
O'C'doub1.21Å1.22Å
C2'C1'sing1.53Å1.53Å
C1'H1'sing1.09Å1.10Å
C1'H1'Asing1.09Å1.10Å
C3'C2'sing1.53Å1.53Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C4'C3'sing1.53Å1.54Å
C3'H3'sing1.09Å1.10Å
C3'H3'Asing1.09Å1.10Å
C5'C4'sing1.53Å1.54Å
C4'H4'sing1.09Å1.10Å
C4'H4'Asing1.09Å1.10Å
C6'C5'sing1.53Å1.53Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
C6'H6'sing1.09Å1.10Å
C6'H6'Asing1.09Å1.10Å
C6'H6'Bsing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O''C''C1''120.3°120.0°
O''C''O3112.9°120.0°
C1''C''O3126.8°120.0°
C''C1''C2''119.1°109.5°
C''C1''H1''106.4°109.5°
C''C1''H1AA104.2°109.4°
C''O3C3118.1°117.0°
C2''C1''H1''106.4°109.5°
C2''C1''H1AA104.1°109.5°
C1''C2''C3''117.3°109.5°
C1''C2''H2''106.9°109.4°
C1''C2''H2AA105.1°109.5°
H1''C1''H1AA117.4°109.4°
C3''C2''H2''107.0°109.4°
C3''C2''H2AA105.1°109.5°
C2''C3''C4''113.5°109.5°
C2''C3''H3''108.1°109.5°
C2''C3''H3AA107.2°109.5°
H2''C2''H2AA115.9°109.5°
C4''C3''H3''108.1°109.5°
C4''C3''H3AA107.2°109.5°
C3''C4''C5''112.3°109.5°
C3''C4''H4''108.5°109.4°
C3''C4''H4AA107.9°109.5°
H3''C3''H3AA112.7°109.4°
C5''C4''H4''108.5°109.4°
C5''C4''H4AA107.9°109.5°
C4''C5''C6''112.7°109.5°
C4''C5''H5''108.4°109.5°
C4''C5''H5AA107.7°109.5°
H4''C4''H4AA111.7°109.5°
C6''C5''H5''108.4°109.5°
C6''C5''H5AA107.7°109.5°
C5''C6''H6''109.5°109.4°
C5''C6''H6AA109.5°109.4°
C5''C6''H6AB109.5°109.5°
H5''C5''H5AA112.0°109.4°
H6''C6''H6AA109.5°109.6°
H6''C6''H6AB109.4°109.5°
H6AAC6''H6AB109.4°109.5°
O3C3C2105.9°109.5°
O3C3H3110.7°109.5°
O3C3H3A111.4°109.5°
C2C3H3110.7°109.4°
C2C3H3A111.5°109.5°
C3C2O2106.8°109.5°
C3C2C1113.1°109.5°
C3C2H2110.1°109.5°
H3C3H3A106.8°109.5°
O2C2C1112.8°109.5°
O2C2H2110.4°109.4°
C2O2C'109.5°117.0°
C1C2H2103.6°109.5°
C2C1O3P112.2°109.5°
C2C1H1108.6°109.5°
C2C1H1A108.0°109.5°
O3PC1H1108.6°109.5°
O3PC1H1A108.0°109.4°
C1O3PP124.1°123.0°
H1C1H1A111.6°109.4°
O3PPO1P105.8°109.5°
O3PPO2P104.0°109.5°
O3PPO4P107.3°109.5°
O1PPO2P111.8°109.5°
O1PPO4P112.1°109.5°
O2PPO4P115.0°109.5°
PO2PHO2P109.5°114.0°
PO4PHO4P109.5°114.0°
O2C'C1'120.2°120.0°
O2C'O'117.9°120.0°
C1'C'O'122.0°120.0°
C'C1'C2'111.4°109.4°
C'C1'H1'108.8°109.5°
C'C1'H1'A108.4°109.5°
C2'C1'H1'108.9°109.5°
C2'C1'H1'A108.4°109.5°
C1'C2'C3'109.8°109.4°
C1'C2'H2'109.4°109.5°
C1'C2'H2'A109.3°109.5°
H1'C1'H1'A110.9°109.5°
C3'C2'H2'109.4°109.5°
C3'C2'H2'A109.3°109.5°
C2'C3'C4'111.1°109.4°
C2'C3'H3'108.9°109.5°
C2'C3'H3'A108.6°109.5°
H2'C2'H2'A109.7°109.5°
C4'C3'H3'108.9°109.5°
C4'C3'H3'A108.6°109.5°
C3'C4'C5'114.9°109.5°
C3'C4'H4'107.7°109.5°
C3'C4'H4'A106.5°109.5°
H3'C3'H3'A110.8°109.5°
C5'C4'H4'107.7°109.5°
C5'C4'H4'A106.5°109.4°
C4'C5'C6'113.5°109.5°
C4'C5'H5'108.1°109.5°
C4'C5'H5'A107.2°109.4°
H4'C4'H4'A113.8°109.4°
C6'C5'H5'108.1°109.5°
C6'C5'H5'A107.2°109.5°
C5'C6'H6'109.5°109.5°
C5'C6'H6'A109.5°109.4°
C5'C6'H6'B109.5°109.5°
H5'C5'H5'A112.7°109.4°
H6'C6'H6'A109.4°109.5°
H6'C6'H6'B109.5°109.5°
H6'AC6'H6'B109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O''C''C1''O3178.7°179.7°
O''C''C1''C2''136.5°0.0°
O''C''C1''H1''103.5°120.0°
O''C''C1''H1AA21.1°120.1°
O''C''O3C311.1°0.0°
C''C1''C2''H1''120.0°120.0°
C''C1''C2''H1AA115.4°120.0°
C''C1''H1''H1AA116.0°119.9°
C''C1''C2''C3''44.3°180.0°
C''C1''C2''H2''75.7°60.0°
C''C1''C2''H2AA160.6°60.0°
C1''C''O3C3167.7°179.7°
O3C''C1''C2''42.2°179.7°
O3C''C1''H1''77.7°59.7°
O3C''C1''H1AA157.6°60.3°
C''O3C3C2142.4°180.0°
C''O3C3H397.6°60.0°
C''O3C3H3A21.1°60.0°
C2''C1''H1''H1AA116.0°120.0°
C1''C2''C3''H2''120.0°119.9°
C1''C2''C3''H2AA116.3°120.0°
C1''C2''H2''H2AA116.8°120.0°
C1''C2''C3''C4''122.2°180.0°
C1''C2''C3''H3''2.2°60.0°
C1''C2''C3''H3AA119.6°59.9°
H1''C1''C2''C3''164.3°60.0°
H1''C1''C2''H2''44.3°180.0°
H1''C1''C2''H2AA79.4°60.1°
H1AAC1''C2''C3''71.1°60.0°
H1AAC1''C2''H2''168.9°60.0°
H1AAC1''C2''H2AA45.3°180.0°
C3''C2''H2''H2AA116.8°120.1°
C2''C3''C4''H3''120.0°120.0°
C2''C3''C4''H3AA118.2°120.0°
C2''C3''H3''H3AA118.3°120.0°
C2''C3''C4''C5''171.2°NaN°
C2''C3''C4''H4''51.2°60.1°
C2''C3''C4''H4AA70.0°59.9°
H2''C2''C3''C4''117.8°60.1°
H2''C2''C3''H3''122.2°179.9°
H2''C2''C3''H3AA0.4°60.0°
H2AAC2''C3''C4''5.9°60.0°
H2AAC2''C3''H3''114.2°60.0°
H2AAC2''C3''H3AA124.1°180.0°
C4''C3''H3''H3AA118.3°120.0°
C3''C4''C5''H4''120.0°119.9°
C3''C4''C5''H4AA118.8°120.0°
C3''C4''H4''H4AA118.8°120.0°
C3''C4''C5''C6''141.7°180.0°
C3''C4''C5''H5''98.4°60.0°
C3''C4''C5''H5AA23.0°59.9°
H3''C3''C4''C5''68.8°60.0°
H3''C3''C4''H4''171.2°179.9°
H3''C3''C4''H4AA50.0°60.1°
H3AAC3''C4''C5''53.0°60.0°
H3AAC3''C4''H4''67.0°60.0°
H3AAC3''C4''H4AA171.8°180.0°
C5''C4''H4''H4AA118.8°120.1°
C4''C5''C6''H5''120.0°120.0°
C4''C5''C6''H5AA118.6°120.0°
C4''C5''H5''H5AA118.7°120.0°
C4''C5''C6''H6''129.8°60.0°
C4''C5''C6''H6AA110.1°60.0°
C4''C5''C6''H6AB9.8°179.9°
H4''C4''C5''C6''21.7°60.0°
H4''C4''C5''H5''141.6°179.9°
H4''C4''C5''H5AA97.0°60.0°
H4AAC4''C5''C6''99.5°60.0°
H4AAC4''C5''H5''20.5°60.0°
H4AAC4''C5''H5AA141.8°180.0°
C6''C5''H5''H5AA118.7°120.0°
C5''C6''H6''H6AA120.0°119.9°
C5''C6''H6''H6AB120.0°120.0°
C5''C6''H6AAH6AB120.0°119.9°
H5''C5''C6''H6''9.8°180.0°
H5''C5''C6''H6AA129.9°60.0°
H5''C5''C6''H6AB110.2°59.9°
H5AAC5''C6''H6''111.5°60.0°
H5AAC5''C6''H6AA8.5°180.0°
H5AAC5''C6''H6AB128.5°60.0°
H6''C6''H6AAH6AB120.0°120.1°
O3C3C2H3120.0°120.0°
O3C3C2H3A121.3°120.0°
O3C3H3H3A121.4°120.1°
O3C3C2O281.8°65.0°
O3C3C2C1153.5°55.0°
O3C3C2H238.0°175.0°
C2C3H3H3A121.5°120.0°
C3C2O2C1124.9°120.0°
C3C2O2H2119.7°120.0°
C3C2C1H2119.2°120.0°
C3C2C1O3P154.7°55.0°
C3C2C1H134.7°65.0°
C3C2C1H1A86.5°175.0°
C3C2O2C'108.5°150.0°
H3C3C2O238.2°175.0°
H3C3C2C186.5°65.0°
H3C3C2H2158.1°55.0°
H3AC3C2O2156.8°55.0°
H3AC3C2C132.1°175.0°
H3AC3C2H283.3°65.0°
O2C2C1H2119.5°120.0°
O2C2C1O3P33.4°65.0°
O2C2C1H186.6°174.9°
O2C2C1H1A152.2°55.0°
C2O2C'C1'166.0°180.0°
C2O2C'O'14.9°0.0°
C2C1O3PH1120.0°120.1°
C2C1O3PH1A118.8°120.0°
C2C1H1H1A118.9°120.0°
C2C1O3PP179.8°180.0°
C1C2O2C'126.6°90.0°
H2C2C1O3P86.1°175.0°
H2C2C1H1153.9°55.0°
H2C2C1H1A32.8°65.0°
H2C2O2C'11.2°30.0°
O3PC1H1H1A118.9°119.9°
C1O3PPO1P85.2°55.0°
C1O3PPO2P156.8°175.0°
C1O3PPO4P34.6°65.0°
H1C1O3PP60.2°59.9°
H1AC1O3PP61.0°60.0°
O3PPO1PO2P112.6°120.0°
O3PPO1PO4P116.6°120.0°
O3PPO2PO4P117.0°120.0°
O3PPO4PHO4P175.6°60.0°
O3PPO2PHO2P142.0°180.0°
O1PPO2PO4P129.3°120.0°
O1PPO4PHO4P68.7°180.0°
O1PPO2PHO2P104.3°60.0°
O2PPO4PHO4P60.4°60.0°
O4PPO2PHO2P25.0°60.0°
O2C'C1'O'179.1°180.0°
O2C'C1'C2'60.1°180.0°
O2C'C1'H1'59.9°60.0°
O2C'C1'H1'A179.3°60.0°
C'C1'C2'H1'120.0°120.0°
C'C1'C2'H1'A119.2°120.0°
C'C1'H1'H1'A119.2°120.0°
C'C1'C2'C3'131.8°180.0°
C'C1'C2'H2'11.8°60.1°
C'C1'C2'H2'A108.3°60.0°
O'C'C1'C2'120.8°0.0°
O'C'C1'H1'119.2°120.0°
O'C'C1'H1'A1.6°120.0°
C2'C1'H1'H1'A119.2°120.0°
C1'C2'C3'H2'120.0°119.9°
C1'C2'C3'H2'A119.9°120.0°
C1'C2'H2'H2'A119.9°120.0°
C1'C2'C3'C4'149.8°NaN°
C1'C2'C3'H3'90.2°60.1°
C1'C2'C3'H3'A30.5°60.0°
H1'C1'C2'C3'108.2°60.0°
H1'C1'C2'H2'131.8°179.9°
H1'C1'C2'H2'A11.7°60.0°
H1'AC1'C2'C3'12.6°60.0°
H1'AC1'C2'H2'107.4°60.0°
H1'AC1'C2'H2'A132.5°180.0°
C3'C2'H2'H2'A119.9°120.1°
C2'C3'C4'H3'120.0°119.9°
C2'C3'C4'H3'A119.3°120.0°
C2'C3'H3'H3'A119.3°120.1°
C2'C3'C4'C5'117.8°180.0°
C2'C3'C4'H4'2.2°60.0°
C2'C3'C4'H4'A124.6°60.0°
H2'C2'C3'C4'29.8°60.1°
H2'C2'C3'H3'149.8°180.0°
H2'C2'C3'H3'A89.5°59.9°
H2'AC2'C3'C4'90.3°60.0°
H2'AC2'C3'H3'29.7°59.9°
H2'AC2'C3'H3'A150.4°180.0°
C4'C3'H3'H3'A119.4°120.0°
C3'C4'C5'H4'120.0°120.0°
C3'C4'C5'H4'A117.6°120.0°
C3'C4'H4'H4'A117.8°120.1°
C3'C4'C5'C6'134.7°180.0°
C3'C4'C5'H5'14.7°60.0°
C3'C4'C5'H5'A107.1°60.0°
H3'C3'C4'C5'122.2°60.0°
H3'C3'C4'H4'117.8°180.0°
H3'C3'C4'H4'A4.6°59.9°
H3'AC3'C4'C5'1.5°60.0°
H3'AC3'C4'H4'121.5°60.0°
H3'AC3'C4'H4'A116.1°180.0°
C5'C4'H4'H4'A117.8°119.9°
C4'C5'C6'H5'120.0°120.0°
C4'C5'C6'H5'A118.2°120.0°
C4'C5'H5'H5'A118.4°119.9°
C4'C5'C6'H6'63.5°60.0°
C4'C5'C6'H6'A56.5°60.0°
C4'C5'C6'H6'B176.5°180.0°
H4'C4'C5'C6'105.3°59.9°
H4'C4'C5'H5'134.7°180.0°
H4'C4'C5'H5'A12.9°60.1°
H4'AC4'C5'C6'17.1°60.0°
H4'AC4'C5'H5'102.9°60.1°
H4'AC4'C5'H5'A135.3°180.0°
C6'C5'H5'H5'A118.3°120.0°
C5'C6'H6'H6'A120.0°120.0°
C5'C6'H6'H6'B120.0°120.0°
C5'C6'H6'AH6'B120.0°120.0°
H5'C5'C6'H6'176.5°180.0°
H5'C5'C6'H6'A63.5°60.0°
H5'C5'C6'H6'B56.5°60.0°
H5'AC5'C6'H6'54.7°60.0°
H5'AC5'C6'H6'A174.7°180.0°
H5'AC5'C6'H6'B65.3°60.0°
H6'C6'H6'AH6'B120.0°120.1°

223532

PDB entries from 2024-08-07

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