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PD1

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.53Å1.52Å
C1H11sing1.09Å1.11Å
C1H12sing1.09Å1.12Å
C1H13Asing1.09Å1.11Å
C2N1sing1.47Å1.51Å
C2H21Asing1.09Å1.12Å
C2H22sing1.09Å1.11Å
C3C4sing1.53Å1.54Å
C3H31sing1.09Å1.11Å
C3H32sing1.09Å1.11Å
C3H33sing1.09Å1.12Å
C4N1sing1.47Å1.50Å
C4H41sing1.09Å1.12Å
C4H42sing1.09Å1.12Å
C5C6sing1.53Å1.52Å
C5N1sing1.47Å1.51Å
C5H51sing1.09Å1.11Å
C5H52sing1.09Å1.11Å
C6C7sing1.53Å1.51Å
C6H61sing1.09Å1.11Å
C6H62sing1.09Å1.11Å
C7C8sing1.53Å1.52Å
C7H71sing1.09Å1.12Å
C7H72sing1.09Å1.11Å
C8N2sing1.46Å1.46Å
C8H81sing1.09Å1.12Å
C8H82sing1.09Å1.12Å
C9N2sing1.38Å1.42Å
C9N3doub1.33Å1.32ÅAromatic
C9N4sing1.32Å1.33ÅAromatic
C10C11doub1.41Å1.40ÅAromatic
C10N3sing1.32Å1.38ÅAromatic
C10H10sing1.08Å1.10Å
C11C12sing1.42Å1.42ÅAromatic
C11C13sing1.40Å1.41ÅAromatic
C12N4doub1.34Å1.33ÅAromatic
C12N5sing1.33Å1.32ÅAromatic
C13C14doub1.39Å1.38ÅAromatic
C13H13sing1.08Å1.10Å
C14C15sing1.41Å1.38ÅAromatic
C14C16sing1.48Å1.39ÅAromatic
C15N5doub1.32Å1.33ÅAromatic
C15N6sing1.39Å1.43Å
C16C17doub1.39Å1.40ÅAromatic
C16C21sing1.39Å1.39ÅAromatic
C17C18sing1.39Å1.38ÅAromatic
C17H17sing1.08Å1.10Å
C18C19doub1.39Å1.37ÅAromatic
C18O1sing1.36Å1.39Å
C19C20sing1.39Å1.38ÅAromatic
C19H19sing1.08Å1.10Å
C20C21doub1.39Å1.39ÅAromatic
C20O2sing1.36Å1.39Å
C21H21sing1.08Å1.10Å
C22O1sing1.43Å1.45Å
C22H221sing1.09Å1.12Å
C22H222sing1.09Å1.12Å
C22H223sing1.09Å1.12Å
C23O2sing1.43Å1.46Å
C23H231sing1.09Å1.12Å
C23H232sing1.09Å1.12Å
C23H233sing1.09Å1.12Å
C24N6sing1.35Å1.33Å
C24N7sing1.35Å1.34Å
C24O3doub1.22Å1.23Å
C25C26sing1.53Å1.50Å
C25C27sing1.53Å1.53Å
C25C28sing1.53Å1.50Å
C25N7sing1.47Å1.45Å
C26H261sing1.09Å1.11Å
C26H262sing1.09Å1.12Å
C26H263sing1.09Å1.11Å
C27H271sing1.09Å1.12Å
C27H272sing1.09Å1.11Å
C27H273sing1.09Å1.12Å
C28H281sing1.09Å1.12Å
C28H282sing1.09Å1.11Å
C28H283sing1.09Å1.11Å
N2HN2sing0.97Å1.02Å
N6HN6sing0.97Å1.02Å
N7HN7sing0.97Å1.02Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1H11109.8°109.5°
C2C1H12112.1°109.5°
C2C1H13A112.1°109.5°
C1C2N1109.8°109.5°
C1C2H21A112.1°109.5°
C1C2H22112.1°109.5°
H11C1H12112.1°109.4°
H11C1H13A112.1°109.4°
H12C1H13A98.3°109.5°
N1C2H21A112.1°109.4°
N1C2H22112.1°109.4°
C2N1C4117.2°106.7°
C2N1C5117.6°106.7°
H21AC2H2298.4°109.5°
C4C3H31109.5°109.5°
C4C3H32112.2°109.5°
C4C3H33112.2°109.5°
C3C4N1109.5°109.5°
C3C4H41112.2°109.4°
C3C4H42112.2°109.4°
H31C3H32112.3°109.4°
H31C3H33112.2°109.5°
H32C3H3398.2°109.5°
N1C4H41112.2°109.6°
N1C4H42112.2°109.4°
C4N1C5117.0°106.8°
H41C4H4298.2°109.5°
C6C5N1113.9°109.5°
C6C5H51110.5°109.4°
C6C5H52110.6°109.5°
C5C6C7111.4°109.5°
C5C6H61111.5°109.5°
C5C6H62111.5°109.5°
N1C5H51110.6°109.5°
N1C5H52110.6°109.5°
H51C5H5299.7°109.4°
C7C6H61111.5°109.4°
C7C6H62111.5°109.4°
C6C7C8110.8°109.5°
C6C7H71111.7°109.4°
C6C7H72111.8°109.4°
H61C6H6298.9°109.5°
C8C7H71111.7°109.5°
C8C7H72111.7°109.5°
C7C8N2111.8°109.5°
C7C8H81111.4°109.5°
C7C8H82111.4°109.4°
H71C7H7298.7°109.4°
N2C8H81111.3°109.5°
N2C8H82111.3°109.4°
C8N2C9129.0°120.1°
C8N2HN2105.5°120.0°
H81C8H8299.1°109.5°
N2C9N3117.0°118.6°
N2C9N4117.1°118.7°
C9N2HN2105.4°119.9°
N3C9N4125.9°122.7°
C9N3C10116.2°121.4°
C9N4C12121.0°120.4°
C11C10N3120.4°118.5°
C11C10H10120.4°120.7°
C10C11C12119.0°118.7°
C10C11C13122.3°121.9°
N3C10H10119.3°120.8°
C12C11C13118.7°119.5°
C11C12N4117.6°118.4°
C11C12N5119.1°120.2°
C11C13C14119.6°117.9°
C11C13H13121.0°121.0°
N4C12N5123.3°121.4°
C12N5C15122.6°121.5°
C14C13H13119.4°121.1°
C13C14C15118.2°119.5°
C13C14C16118.5°120.3°
C15C14C16123.3°120.3°
C14C15N5121.8°121.5°
C14C15N6120.5°119.3°
C14C16C17119.2°120.1°
C14C16C21121.9°120.1°
N5C15N6117.7°119.2°
C15N6C24132.1°120.0°
C15N6HN6104.4°120.0°
C17C16C21118.8°119.8°
C16C17C18120.2°120.0°
C16C17H17120.5°120.0°
C16C21C20119.2°119.9°
C16C21H21120.4°120.0°
C18C17H17119.3°120.0°
C17C18C19121.7°120.1°
C17C18O1119.0°120.0°
C19C18O1119.3°120.0°
C18C19C20118.0°120.1°
C18C19H19120.5°119.9°
C18O1C22124.2°106.8°
C20C19H19121.5°119.9°
C19C20C21122.0°120.1°
C19C20O2118.8°119.9°
C21C20O2119.2°120.0°
C20C21H21120.4°120.1°
C20O2C23123.9°106.8°
O1C22H221124.2°109.4°
O1C22H222107.0°109.5°
O1C22H223107.0°109.5°
H221C22H222106.9°109.4°
H221C22H223107.0°109.4°
H222C22H223102.6°109.5°
O2C23H231123.9°109.5°
O2C23H232107.1°109.5°
O2C23H233107.1°109.5°
H231C23H232107.1°109.4°
H231C23H233107.0°109.4°
H232C23H233102.6°109.5°
N6C24N7117.9°120.0°
N6C24O3120.5°120.0°
C24N6HN6104.4°120.0°
N7C24O3121.5°120.0°
C24N7C25125.2°120.0°
C24N7HN7112.6°120.0°
C26C25C27109.5°109.5°
C26C25C28108.7°109.5°
C26C25N7109.8°109.5°
C25C26H261109.5°109.5°
C25C26H262112.2°109.5°
C25C26H263112.2°109.5°
C27C25C28109.8°109.5°
C27C25N7110.6°109.4°
C25C27H271109.5°109.5°
C25C27H272112.2°109.4°
C25C27H273112.2°109.4°
C28C25N7108.5°109.5°
C25C28H281108.7°109.5°
C25C28H282112.5°109.5°
C25C28H283112.5°109.5°
C25N7HN7122.2°120.0°
H261C26H262112.2°109.5°
H261C26H263112.3°109.5°
H262C26H26398.2°109.4°
H271C27H272112.2°109.5°
H271C27H273112.2°109.5°
H272C27H27398.2°109.5°
H281C28H282112.5°109.5°
H281C28H283112.5°109.4°
H282C28H28398.0°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1H11H12125.2°120.0°
C2C1H11H13A125.3°120.0°
C2C1H12H13A118.0°120.0°
C1C2N1H21A125.2°120.0°
C1C2N1H22125.2°120.0°
C1C2H21AH22118.0°120.0°
C1C2N1C4138.9°66.2°
C1C2N1C573.5°180.0°
H11C1H12H13A118.0°119.9°
H11C1C2N1180.0°60.0°
H11C1C2H21A54.8°180.0°
H11C1C2H2254.8°60.0°
H12C1C2N154.8°180.0°
H12C1C2H21A70.5°60.0°
H12C1C2H22180.0°60.0°
H13AC1C2N154.7°60.0°
H13AC1C2H21A179.9°60.0°
H13AC1C2H2270.6°180.0°
N1C2H21AH22118.0°120.0°
C2N1C4C360.5°165.4°
C2N1C4C5147.7°113.8°
C2N1C4H4164.9°45.4°
C2N1C4H42174.2°74.6°
C2N1C5C622.1°76.1°
C2N1C5H51103.2°163.9°
C2N1C5H52147.4°44.0°
H21AC2N1C495.8°53.8°
H21AC2N1C551.7°60.0°
H22C2N1C413.7°173.9°
H22C2N1C5161.2°60.0°
C4C3H31H32125.3°120.0°
C4C3H31H33125.2°120.1°
C4C3H32H33118.1°120.1°
C3C4N1H41125.3°120.0°
C3C4N1H42125.3°119.9°
C3C4H41H42118.2°120.0°
C3C4N1C5151.8°80.7°
H31C3H32H33118.1°120.0°
H31C3C4N1180.0°178.2°
H31C3C4H4154.8°61.7°
H31C3C4H4254.7°58.3°
H32C3C4N154.7°58.2°
H32C3C4H4170.6°178.3°
H32C3C4H42179.9°61.7°
H33C3C4N154.7°61.8°
H33C3C4H41180.0°58.3°
H33C3C4H4270.5°178.3°
N1C4H41H42118.1°120.0°
C4N1C5C6125.5°170.1°
C4N1C5H51109.2°50.1°
C4N1C5H520.2°69.9°
H41C4N1C582.9°159.3°
H42C4N1C526.5°39.2°
C6C5N1H51125.3°120.0°
C6C5N1H52125.3°120.0°
C6C5H51H52116.4°119.9°
C5C6C7H61125.3°120.0°
C5C6C7H62125.3°120.0°
C5C6H61H62117.5°120.0°
C5C6C7C8175.9°180.0°
C5C6C7H7158.9°60.0°
C5C6C7H7250.6°59.9°
N1C5H51H52116.4°120.0°
N1C5C6C7160.5°176.1°
N1C5C6H6135.3°56.1°
N1C5C6H6274.3°63.9°
H51C5C6C735.2°63.9°
H51C5C6H6190.0°176.1°
H51C5C6H62160.4°56.1°
H52C5C6C774.2°56.0°
H52C5C6H61160.6°64.0°
H52C5C6H6251.0°176.0°
C7C6H61H62117.4°119.9°
C6C7C8H71125.3°120.0°
C6C7C8H72125.3°120.0°
C6C7H71H72117.7°119.9°
C6C7C8N2165.5°180.0°
C6C7C8H8140.3°59.9°
C6C7C8H8269.3°60.0°
H61C6C7C850.6°59.9°
H61C6C7H71175.9°180.0°
H61C6C7H7274.6°60.1°
H62C6C7C858.9°60.0°
H62C6C7H7166.4°60.1°
H62C6C7H72175.9°180.0°
C8C7H71H72117.6°120.0°
C7C8N2H81125.3°120.1°
C7C8N2H82125.3°119.9°
C7C8H81H82117.3°119.9°
C7C8N2C9166.7°180.0°
C7C8N2HN268.0°0.1°
H71C7C8N269.3°60.0°
H71C7C8H81165.5°179.9°
H71C7C8H8256.0°60.0°
H72C7C8N240.2°60.0°
H72C7C8H8185.1°60.1°
H72C7C8H82165.4°180.0°
N2C8H81H82117.2°120.0°
C8N2C9HN2125.3°179.9°
C8N2C9N3159.8°0.1°
C8N2C9N419.5°179.7°
H81C8N2C968.0°59.9°
H81C8N2HN257.2°120.0°
H82C8N2C941.5°60.1°
H82C8N2HN2166.7°120.0°
N2C9N3N4179.2°179.6°
N2C9N3C10179.4°179.9°
N2C9N4C12179.7°179.8°
C9N3C10C110.6°0.1°
C9N3C10H10179.4°180.0°
N3C9N4C120.4°0.6°
N3C9N2HN274.9°180.0°
N4C9N3C100.2°0.3°
C9N4C12C111.0°0.6°
C9N4C12N5178.2°179.7°
N4C9N2HN2105.8°0.3°
C11C10N3H10180.0°179.9°
C10C11C12C13179.7°179.9°
C10C11C12N41.4°0.2°
C10C11C12N5178.7°179.9°
C10C11C13C14178.5°179.9°
C10C11C13H131.5°0.2°
N3C10C11C121.2°0.1°
N3C10C11C13178.5°180.0°
H10C10C11C12178.8°180.0°
H10C10C11C131.5°0.1°
C11C12N4N5177.2°179.7°
C12C11C13C141.2°0.0°
C12C11C13H13178.8°179.9°
C11C12N5C150.6°0.0°
C13C11C12N4178.4°179.7°
C13C11C12N51.0°0.0°
C11C13C14H13180.0°179.9°
C11C13C14C151.0°0.0°
C11C13C14C16178.2°179.9°
N4C12N5C15177.8°179.7°
C12N5C15C140.4°0.1°
C12N5C15N6179.8°180.0°
C13C14C15C16179.1°179.9°
C13C14C15N50.5°0.1°
C13C14C15N6180.0°180.0°
C13C14C16C1775.9°60.0°
C13C14C16C21103.2°120.3°
H13C13C14C15179.0°179.9°
H13C13C14C161.8°0.0°
C14C15N5N6179.4°180.0°
C15C14C16C17103.3°120.1°
C15C14C16C2177.6°59.6°
C14C15N6C24176.6°179.9°
C14C15N6HN658.1°0.0°
C16C14C15N5178.6°180.0°
C16C14C15N60.8°0.1°
C14C16C17C21179.1°179.7°
C14C16C17C18179.9°180.0°
C14C16C17H170.1°0.1°
C14C16C21C20179.7°179.8°
C14C16C21H210.3°0.3°
N5C15N6C242.9°0.1°
N5C15N6HN6122.4°180.0°
C15N6C24HN6125.3°179.9°
C15N6C24N712.4°180.0°
C15N6C24O3170.2°0.1°
C16C17C18H17180.0°180.0°
C16C17C18C190.7°0.0°
C16C17C18O1179.3°180.0°
C17C16C21C200.6°0.5°
C17C16C21H21179.4°180.0°
C21C16C17C180.8°0.2°
C21C16C17H17179.2°179.8°
C16C21C20C190.4°0.5°
C16C21C20H21180.0°179.4°
C16C21C20O2178.6°179.8°
C17C18C19O1178.6°180.0°
C17C18C19C200.5°0.0°
C17C18C19H19179.5°180.0°
C17C18O1C22142.6°180.0°
H17C17C18C19179.3°180.0°
H17C17C18O10.7°0.0°
C18C19C20H19179.9°180.0°
C18C19C20C210.3°0.3°
C18C19C20O2178.5°180.0°
C19C18O1C2236.0°0.0°
O1C18C19C20179.1°179.9°
O1C18C19H190.9°0.1°
C18O1C22H221180.0°180.0°
C18O1C22H22254.7°60.0°
C18O1C22H22354.7°60.1°
C19C20C21O2178.2°179.7°
C19C20C21H21179.6°180.0°
C19C20O2C2324.1°0.0°
H19C19C20C21179.6°179.7°
H19C19C20O21.4°0.0°
C21C20O2C23154.2°179.7°
O2C20C21H211.4°0.3°
C20O2C23H231180.0°180.0°
C20O2C23H23254.7°60.0°
C20O2C23H23354.7°60.0°
O1C22H221H222125.3°120.0°
O1C22H221H223125.3°120.0°
O1C22H222H223112.5°120.1°
H221C22H222H223112.4°119.9°
O2C23H231H232125.3°120.0°
O2C23H231H233125.3°120.0°
O2C23H232H233112.6°120.0°
H231C23H232H233112.5°120.0°
N6C24N7O3177.4°179.9°
N6C24N7C25177.2°179.9°
N6C24N7HN72.9°0.0°
C24N7C25C2664.9°180.0°
C24N7C25C2756.1°60.0°
C24N7C25C28176.5°60.0°
C24N7C25HN7180.0°180.0°
N7C24N6HN6112.9°0.1°
O3C24N7C250.2°0.0°
O3C24N6HN664.5°180.0°
O3C24N7HN7179.8°179.9°
C26C25C27C28119.2°120.0°
C26C25C27N7121.1°120.0°
C26C25C28N7119.3°120.0°
C25C26H261H262125.2°120.0°
C25C26H261H263125.3°120.0°
C25C26H262H263118.1°120.0°
C26C25C27H271180.0°60.0°
C26C25C27H27254.7°180.0°
C26C25C27H27354.8°60.0°
C26C25C28H281180.0°60.0°
C26C25C28H28254.8°60.0°
C26C25C28H28354.8°180.0°
C26C25N7HN7115.1°0.1°
C27C25C28N7121.0°120.0°
C27C25C26H261179.9°60.0°
C27C25C26H26254.8°179.9°
C27C25C26H26354.7°60.0°
C25C27H271H272125.3°120.0°
C25C27H271H273125.2°120.0°
C25C27H272H273118.1°120.0°
C27C25C28H28160.3°180.0°
C27C25C28H282174.5°60.0°
C27C25C28H28364.9°60.0°
C27C25N7HN7124.0°120.0°
C28C25C26H26160.2°60.0°
C28C25C26H262174.6°60.0°
C28C25C26H26365.2°180.0°
C28C25C27H27160.8°180.0°
C28C25C27H27264.5°60.0°
C28C25C27H273174.0°60.0°
C25C28H281H282125.2°120.0°
C25C28H281H283125.2°120.0°
C25C28H282H283118.4°120.0°
C28C25N7HN73.5°120.0°
N7C25C26H26158.3°180.0°
N7C25C26H26266.9°60.0°
N7C25C26H263176.3°60.0°
N7C25C27H27158.9°60.0°
N7C25C27H272175.8°60.0°
N7C25C27H27366.3°180.0°
N7C25C28H28160.7°60.0°
N7C25C28H28264.5°180.0°
N7C25C28H283174.1°60.0°
H261C26H262H263118.2°119.9°
H271C27H272H273118.1°120.0°
H281C28H282H283118.5°119.9°

222624

PDB entries from 2024-07-17

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