Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PCY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1N2sing1.35Å1.52Å
C1N4sing1.35Å1.54Å
C1O5doub1.22Å1.36Å
N2C3sing1.47Å1.69Å
N2H2sing0.97Å1.00Å
C3C6sing1.53Å1.64Å
C3C7sing1.54Å1.62Å
C3C8sing1.54Å1.69Å
N4C9sing1.46Å1.64Å
N4C10sing1.47Å1.62Å
C6C11sing1.53Å1.68Å
C6O12sing1.43Å1.57Å
C6H6sing1.09Å1.10Å
C7C13sing1.53Å1.69Å
C7O14sing1.43Å1.59Å
C7C15sing1.55Å1.65Å
C8N16sing1.47Å1.62Å
C8C17sing1.54Å1.64Å
C8H8sing1.09Å1.10Å
C9H91sing1.09Å1.10Å
C9H92sing1.09Å1.10Å
C9H93sing1.09Å1.10Å
C10H101sing1.09Å1.10Å
C10H102sing1.09Å1.10Å
C10H103sing1.09Å1.10Å
C11H111sing1.09Å1.10Å
C11H112sing1.09Å1.10Å
C11H113sing1.09Å1.10Å
O12H12sing0.97Å0.95Å
C13H131sing1.09Å1.10Å
C13H132sing1.09Å1.10Å
C13H133sing1.09Å1.10Å
O14H14sing0.97Å0.95Å
C15C17sing1.55Å1.65Å
C15C18sing1.53Å1.70Å
C15O19sing1.43Å1.53Å
N16H161sing1.01Å1.00Å
N16H162sing1.01Å1.00Å
C17N20sing1.47Å1.59Å
C17H17sing1.09Å1.10Å
C18O21sing1.45Å1.55Å
C18H181sing1.09Å1.10Å
C18H182sing1.09Å1.10Å
O19H19sing0.97Å0.95Å
N20C22sing1.40Å1.55Å
N20H20sing0.97Å1.00Å
O21C23sing1.35Å1.53Å
C22C24doub1.39Å1.56ÅAromatic
C22C25sing1.39Å1.54ÅAromatic
C23O26doub1.22Å1.37Å
C23C27sing1.47Å1.59Å
C24C28sing1.40Å1.50ÅAromatic
C24H24sing1.08Å1.08Å
C25C29doub1.38Å1.54ÅAromatic
C25H25sing1.08Å1.08Å
C27C30doub1.40Å1.53ÅAromatic
C27C31sing1.40Å1.54ÅAromatic
C28C32sing1.47Å1.61Å
C28C33doub1.40Å1.53ÅAromatic
C29C33sing1.38Å1.55ÅAromatic
C29H29sing1.08Å1.08Å
C30C34sing1.51Å1.68Å
C30C35sing1.38Å1.53ÅAromatic
C31O36sing1.36Å1.55Å
C31C37doub1.39Å1.54ÅAromatic
C32C38sing1.51Å1.56Å
C32O39doub1.21Å1.51Å
C33H33sing1.08Å1.08Å
C34H341sing1.09Å1.10Å
C34H342sing1.09Å1.10Å
C34H343sing1.09Å1.10Å
C35C40doub1.38Å1.56ÅAromatic
C35H35sing1.08Å1.08Å
O36H36sing0.97Å0.95Å
C37C40sing1.38Å1.55ÅAromatic
C37H37sing1.08Å1.08Å
C38H381sing1.09Å1.10Å
C38H382sing1.09Å1.10Å
C38H383sing1.09Å1.10Å
C40H40sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N2C1N4121.7°120.0°
N2C1O5119.5°120.0°
C1N2C3132.9°120.0°
C1N2H2113.5°119.9°
N4C1O5118.5°120.0°
C1N4C9122.4°120.0°
C1N4C10125.0°120.0°
C3N2H2113.5°120.1°
N2C3C6108.5°110.0°
N2C3C7121.4°110.0°
N2C3C8106.4°110.0°
C6C3C7106.2°110.0°
C6C3C8108.3°110.0°
C3C6C11108.0°109.5°
C3C6O12107.1°109.5°
C3C6H6110.4°109.4°
C7C3C8105.5°106.7°
C3C7C13110.6°110.5°
C3C7O14109.1°110.5°
C3C7C15104.0°104.2°
C3C8N16119.6°110.0°
C3C8C17104.7°106.6°
C3C8H8106.5°110.0°
C9N4C10112.6°120.0°
N4C9H91109.5°109.5°
N4C9H92109.5°109.5°
N4C9H93109.5°109.5°
N4C10H101109.5°109.5°
N4C10H102109.5°109.5°
N4C10H103109.5°109.4°
C11C6O12110.1°109.5°
C11C6H6109.8°109.5°
C6C11H111109.5°109.4°
C6C11H112109.5°109.5°
C6C11H113109.5°109.5°
O12C6H6111.4°109.5°
C6O12H12109.5°114.0°
C13C7O14111.2°110.5°
C13C7C15112.0°110.5°
C7C13H131109.5°109.5°
C7C13H132109.4°109.5°
C7C13H133109.5°109.5°
O14C7C15109.7°110.6°
C7O14H14109.5°114.0°
C7C15C17105.1°102.8°
C7C15C18106.7°110.8°
C7C15O19112.2°110.8°
N16C8C17111.3°110.0°
N16C8H8107.2°110.0°
C8N16H161109.5°111.0°
C8N16H162109.5°111.0°
C17C8H8107.0°110.1°
C8C17C15107.7°104.2°
C8C17N20107.4°110.5°
C8C17H17108.9°110.5°
H91C9H92109.4°109.5°
H91C9H93109.5°109.4°
H92C9H93109.5°109.5°
H101C10H102109.5°109.5°
H101C10H103109.4°109.5°
H102C10H103109.5°109.5°
H111C11H112109.5°109.5°
H111C11H113109.5°109.5°
H112C11H113109.5°109.5°
H131C13H132109.4°109.4°
H131C13H133109.5°109.5°
H132C13H133109.5°109.5°
C17C15C18116.2°110.8°
C17C15O19106.2°110.7°
C15C17N20114.5°110.4°
C15C17H17108.8°110.6°
C18C15O19110.4°110.8°
C15C18O21110.9°109.5°
C15C18H181109.1°109.5°
C15C18H182109.1°109.5°
C15O19H19109.5°114.0°
H161N16H162109.5°111.0°
N20C17H17109.5°110.5°
C17N20C22112.2°119.9°
C17N20H20108.8°120.1°
O21C18H181109.1°109.5°
O21C18H182109.1°109.5°
C18O21C23123.0°117.1°
H181C18H182109.5°109.5°
C22N20H20108.8°120.0°
N20C22C24118.0°119.9°
N20C22C25121.1°120.0°
O21C23O26123.6°120.0°
O21C23C27115.3°120.0°
C24C22C25120.9°120.0°
C22C24C28120.3°119.7°
C22C24H24119.9°120.1°
C22C25C29118.3°120.3°
C22C25H25120.9°119.9°
O26C23C27121.2°120.0°
C23C27C30122.9°120.2°
C23C27C31115.1°120.2°
C28C24H24119.9°120.1°
C24C28C32118.3°120.1°
C24C28C33119.8°119.7°
C29C25H25120.9°119.8°
C25C29C33120.2°120.2°
C25C29H29119.9°119.9°
C30C27C31122.0°119.6°
C27C30C34121.4°120.1°
C27C30C35118.8°119.9°
C27C31O36118.4°120.1°
C27C31C37120.2°119.7°
C32C28C33121.8°120.1°
C28C32C38115.0°120.0°
C28C32O39124.8°120.0°
C28C33C29120.6°120.0°
C28C33H33119.7°120.0°
C33C29H29119.9°119.8°
C29C33H33119.7°120.0°
C34C30C35119.8°120.1°
C30C34H341109.5°109.5°
C30C34H342109.5°109.4°
C30C34H343109.4°109.4°
C30C35C40119.9°120.3°
C30C35H35120.0°119.8°
O36C31C37121.5°120.2°
C31O36H36109.5°114.0°
C31C37C40118.5°120.1°
C31C37H37120.7°120.0°
C38C32O39120.1°120.0°
C32C38H381109.5°109.5°
C32C38H382109.5°109.5°
C32C38H383109.5°109.5°
H341C34H342109.4°109.5°
H341C34H343109.5°109.5°
H342C34H343109.5°109.5°
C40C35H35120.1°119.9°
C35C40C37120.6°120.4°
C35C40H40119.7°119.8°
C40C37H37120.7°120.0°
C37C40H40119.7°119.8°
H381C38H382109.4°109.5°
H381C38H383109.4°109.5°
H382C38H383109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N2C1N4O5173.6°179.8°
C1N2C3H2180.0°180.0°
C1N2C3C6154.1°57.1°
C1N2C3C782.6°178.5°
C1N2C3C837.8°64.2°
N2C1N4C9134.2°180.0°
N2C1N4C1044.2°0.1°
N4C1N2C3106.0°174.2°
N4C1N2H274.0°5.9°
C1N4C9C10178.5°179.9°
C1N4C9H91180.0°90.0°
C1N4C9H9260.0°150.0°
C1N4C9H9360.0°29.9°
C1N4C10H101180.0°60.0°
C1N4C10H10260.0°180.0°
C1N4C10H10360.0°60.0°
O5C1N2C380.5°6.0°
O5C1N2H299.5°173.9°
O5C1N4C939.4°0.2°
O5C1N4C10142.3°179.7°
N2C3C6C7132.0°121.4°
N2C3C6C8115.1°121.4°
N2C3C7C8120.8°119.3°
N2C3C6C1174.2°78.6°
N2C3C6O1244.4°41.3°
N2C3C6H6165.8°161.4°
N2C3C7C1335.0°23.0°
N2C3C7O14157.5°145.5°
N2C3C7C1585.4°95.7°
N2C3C8N1618.0°0.0°
N2C3C8C17107.4°119.3°
N2C3C8H8139.5°121.4°
H2N2C3C625.9°122.9°
H2N2C3C797.4°1.5°
H2N2C3C8142.2°115.7°
C6C3C7C8114.8°119.3°
C3C6C11O12116.6°120.0°
C3C6C11H6120.4°120.0°
C3C6O12H6120.8°120.0°
C6C3C7C1389.4°98.4°
C6C3C7O1433.1°24.2°
C6C3C7C15150.2°143.0°
C6C3C8N1698.5°121.4°
C6C3C8C17136.1°119.4°
C6C3C8H823.0°0.1°
C3C6C11H111180.0°35.7°
C3C6C11H11260.0°155.6°
C3C6C11H11360.0°84.3°
C3C6O12H12180.0°60.0°
C7C3C6C11153.8°160.0°
C7C3C6O1287.6°80.0°
C7C3C6H633.8°40.0°
C3C7C13O14121.3°122.6°
C3C7C13C15115.5°114.8°
C3C7O14C15113.4°114.8°
C7C3C8N16148.2°119.3°
C7C3C8C1722.7°0.0°
C7C3C8H890.4°119.3°
C3C7C13H131180.0°52.5°
C3C7C13H13260.0°172.4°
C3C7C13H13360.0°67.5°
C3C7O14H14180.0°179.9°
C3C7C15C1734.5°37.9°
C3C7C15C18158.4°156.3°
C3C7C15O1980.5°80.3°
C8C3C6C1140.9°42.7°
C8C3C6O12159.5°162.7°
C8C3C6H679.1°77.3°
C8C3C7C13155.8°142.3°
C8C3C7O1481.7°95.2°
C8C3C7C1535.4°23.6°
C3C8N16C17122.2°117.1°
C3C8N16H8121.1°121.4°
C3C8C17H8112.8°119.3°
C3C8C17C151.2°23.5°
C3C8N16H161180.0°157.0°
C3C8N16H16260.0°79.0°
C3C8C17N20125.0°95.0°
C3C8C17H17116.5°142.3°
N4C9H91H92120.0°120.0°
N4C9H91H93120.0°120.0°
N4C9H92H93120.0°120.1°
C9N4C10H1011.5°119.9°
C9N4C10H102118.5°0.1°
C9N4C10H103121.5°120.1°
C10N4C9H911.5°90.1°
C10N4C9H92121.5°29.9°
C10N4C9H93118.5°150.0°
N4C10H101H102120.0°120.0°
N4C10H101H103120.0°119.9°
N4C10H102H103120.0°120.0°
C11C6O12H6122.1°120.1°
C6C11H111H112120.0°120.0°
C6C11H111H113120.0°120.0°
C6C11H112H113120.0°120.0°
C11C6O12H1262.8°60.0°
O12C6C11H11163.4°155.6°
O12C6C11H11256.6°84.4°
O12C6C11H113176.6°35.7°
H6C6C11H11159.6°84.3°
H6C6C11H112179.6°35.7°
H6C6C11H11360.4°155.7°
H6C6O12H1259.2°180.0°
C13C7O14C15124.5°122.6°
C7C13H131H132120.0°120.0°
C7C13H131H133120.0°120.0°
C7C13H132H133120.0°120.1°
C13C7O14H1457.8°57.5°
C13C7C15C17153.9°156.6°
C13C7C15C1882.1°85.1°
C13C7C15O1939.0°38.3°
O14C7C13H13158.7°70.1°
O14C7C13H132178.7°49.9°
O14C7C13H13361.3°169.9°
O14C7C15C1782.1°80.8°
O14C7C15C1841.9°37.5°
O14C7C15O19162.9°160.9°
C7C15C17C820.3°37.9°
C15C7C13H13164.4°167.2°
C15C7C13H13255.5°72.8°
C15C7C13H133175.6°47.3°
C15C7O14H1466.7°65.1°
C7C15C17C18117.7°118.4°
C7C15C17O19119.0°118.3°
C7C15C18O19122.2°123.4°
C7C15C17N2099.1°80.7°
C7C15C17H17138.1°156.6°
C7C15C18O21136.2°180.0°
C7C15C18H181103.6°60.0°
C7C15C18H18216.0°60.0°
C7C15O19H19180.0°180.0°
N16C8C17H8116.8°121.4°
N16C8C17C15131.7°95.8°
C8N16H161H162120.0°124.0°
N16C8C17N20104.5°145.7°
N16C8C17H1713.9°23.0°
C8C17C15N20119.4°118.6°
C8C17C15H17117.8°118.7°
C8C17C15C18138.0°156.2°
C8C17C15O1998.7°80.4°
C17C8N16H16157.8°39.9°
C17C8N16H162177.8°163.8°
C8C17N20H17118.1°122.6°
C8C17N20C22126.7°86.5°
C8C17N20H20112.9°93.5°
H8C8C17C15111.5°142.8°
H8C8N16H16158.9°81.6°
H8C8N16H16261.2°42.4°
H8C8C17N2012.2°24.3°
H8C8C17H17130.7°98.4°
H91C9H92H93120.0°120.0°
H101C10H102H103120.0°120.0°
H111C11H112H113120.0°120.0°
H131C13H132H133120.0°120.0°
C17C15C18O19121.0°123.3°
C15C17N20H17122.4°122.7°
C17C15C18O2119.4°66.6°
C17C15C18H181139.6°173.4°
C17C15C18H182100.8°53.4°
C17C15O19H1965.7°66.7°
C15C17N20C22113.7°158.8°
C15C17N20H206.7°21.2°
C18C15C17N2018.6°37.6°
C18C15C17H17104.2°85.0°
C15C18O21H181120.2°120.0°
C15C18O21H182120.2°120.0°
C15C18H181H182119.4°120.0°
C18C15O19H1961.1°56.6°
C15C18O21C23128.9°180.0°
O19C15C17N20141.9°161.0°
O19C15C17H1719.1°38.3°
O19C15C18O21101.6°56.6°
O19C15C18H18118.6°63.4°
O19C15C18H182138.2°176.6°
C17N20C22H20120.4°180.0°
C17N20C22C2424.2°180.0°
C17N20C22C25155.9°0.3°
H17C17N20C228.7°36.2°
H17C17N20H20129.1°143.8°
O21C18H181H182119.3°120.0°
C18O21C23O267.2°0.1°
C18O21C23C27172.8°180.0°
H181C18O21C238.7°60.0°
H182C18O21C23110.9°60.0°
N20C22C24C25179.9°179.7°
N20C22C24C28179.5°180.0°
N20C22C24H240.6°0.0°
N20C22C25C29179.8°180.0°
N20C22C25H250.2°0.0°
H20N20C22C2496.2°0.0°
H20N20C22C2583.7°179.7°
O21C23O26C27180.0°179.9°
O21C23C27C30139.5°90.1°
O21C23C27C3140.1°89.7°
C22C24C28H24180.0°180.0°
C24C22C25C290.1°0.3°
C24C22C25H25179.9°179.8°
C22C24C28C32179.9°179.9°
C22C24C28C330.5°0.0°
C25C22C24C280.5°0.3°
C25C22C24H24179.5°179.7°
C22C25C29H25180.0°180.0°
C22C25C29C330.2°0.1°
C22C25C29H29179.8°180.0°
O26C23C27C3040.5°90.0°
O26C23C27C31139.9°90.2°
C23C27C30C31179.6°179.7°
C23C27C30C340.2°0.0°
C23C27C30C35179.6°180.0°
C23C27C31O360.3°0.0°
C23C27C31C37179.4°180.0°
C24C28C32C33179.4°180.0°
C24C28C33C290.2°0.3°
C24C28C32C38178.4°180.0°
C24C28C32O391.0°0.1°
C24C28C33H33179.8°180.0°
H24C24C28C320.1°0.1°
H24C24C28C33179.5°180.0°
C25C29C33C280.2°0.4°
C25C29C33H29180.0°179.9°
C25C29C33H33179.8°180.0°
H25C25C29C33179.8°179.9°
H25C25C29H290.2°0.0°
C27C30C34C35179.7°180.0°
C30C27C31O36179.9°179.7°
C30C27C31C370.2°0.3°
C27C30C34H34190.1°90.0°
C27C30C34H342149.9°150.0°
C27C30C34H34329.9°30.0°
C27C30C35C400.2°0.0°
C27C30C35H35179.8°180.0°
C31C27C30C34179.8°179.7°
C31C27C30C350.0°0.3°
C27C31O36C37179.7°180.0°
C27C31O36H36180.0°90.0°
C27C31C37C400.3°0.0°
C27C31C37H37179.7°180.0°
C32C28C33C29179.6°179.6°
C28C32C38O39179.4°179.9°
C32C28C33H330.4°0.0°
C28C32C38H381179.4°0.0°
C28C32C38H38259.4°120.0°
C28C32C38H38360.6°120.0°
C28C33C29H33180.0°179.6°
C28C33C29H29179.8°179.7°
C33C28C32C382.3°0.0°
C33C28C32O39178.3°180.0°
H29C29C33H330.2°0.1°
C30C34H341H342120.0°120.0°
C30C34H341H343120.0°119.9°
C30C34H342H343120.0°119.9°
C34C30C35C40179.6°180.0°
C34C30C35H350.4°0.0°
C35C30C34H34190.1°90.0°
C35C30C34H34229.9°30.0°
C35C30C34H343149.9°150.0°
C30C35C40H35180.0°180.0°
C30C35C40C370.2°0.3°
C30C35C40H40179.8°180.0°
O36C31C37C40179.9°180.0°
O36C31C37H370.1°0.1°
C31C37C40C350.1°0.3°
C37C31O36H360.4°90.0°
C31C37C40H37180.0°180.0°
C31C37C40H40180.0°180.0°
C32C38H381H382120.0°120.0°
C32C38H381H383120.0°120.0°
C32C38H382H383120.0°120.0°
O39C32C38H3810.0°180.0°
O39C32C38H382120.0°60.0°
O39C32C38H383120.0°60.0°
H341C34H342H343120.0°120.1°
C35C40C37H40180.0°179.7°
C35C40C37H37179.9°179.7°
H35C35C40C37179.9°179.7°
H35C35C40H400.2°0.0°
H37C37C40H400.0°0.0°
H381C38H382H383119.9°120.0°

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon