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PCD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.40Å1.37Å
N1C6sing1.37Å1.34Å
N1C1'sing1.50Å1.45Å
C2N3sing1.36Å1.35Å
C2O2doub1.24Å1.24Å
N3C4doub1.34Å1.34Å
C4C5sing1.42Å1.49Å
C4N4sing1.33Å1.31Å
C5C6doub1.34Å1.37Å
C5H5sing0.94Å1.08Å
C6H6sing0.94Å1.08Å
N4H42sing0.88Å1.00Å
N4H41sing0.88Å1.00Å
C1'C2Dsing1.54Å1.54Å
C1'O4Dsing1.41Å1.42Å
C1'H1'sing0.99Å1.10Å
C2DO2'sing1.42Å1.42Å
C2DC3'sing1.54Å1.55Å
C2DH2'sing0.98Å1.10Å
O2'H2O1sing0.84Å0.95Å
C3'C4Dsing1.54Å1.58Å
C3'O3'sing1.42Å1.40Å
C3'H3'sing0.99Å1.10Å
C4DO4Dsing1.44Å1.44Å
C4DC5'sing1.51Å1.56Å
C4DH4Dsing0.99Å1.10Å
O3'H3O1sing0.84Å0.95Å
C5'O5'sing1.45Å1.44Å
C5'H5'2sing0.99Å1.10Å
C5'H5'1sing0.99Å1.10Å
O5'PAsing1.59Å1.60Å
PAO1Adoub1.48Å1.59Å
PAO2Asing1.52Å1.54Å
PAO3Asing1.59Å1.66Å
O2AHOA2sing0.89Å0.95Å
O3APBsing1.59Å1.59Å
PBO1Bdoub1.48Å1.56Å
PBO2Bsing1.52Å1.56Å
PBO3Bsing1.59Å1.56Å
O2BHOB2sing0.89Å0.95Å
O3BC10sing1.44Å1.41Å
C10C9'sing1.53Å1.49Å
C10H102sing0.98Å1.10Å
C10H101sing0.98Å1.10Å
C9'C8'sing1.52Å1.54Å
C9'O9'sing1.44Å1.42Å
C9'H9'sing0.99Å1.10Å
C8'S8'sing1.68Å1.79Å
C8'C7'doub1.35Å1.36Å
S8'MOsing2.28Å2.44Å
C7'S7'sing1.67Å1.77Å
C7'C6'sing1.53Å1.52Å
S7'MOsing2.32Å2.32Å
C6'C7sing1.56Å1.54Å
C6'N5'sing1.46Å1.49Å
C6'H6'sing0.99Å1.10Å
C7O9'sing1.44Å1.43Å
C7N8'sing1.46Å1.45Å
C7H7sing0.99Å1.10Å
N5'C4Asing1.39Å1.41Å
N5'H5'sing0.87Å1.00Å
C4AC4Bdoub1.41Å1.42Å
C4AC4'sing1.44Å1.37Å
N8'C4Bsing1.36Å1.42Å
N8'H8'sing0.89Å1.00Å
C4BN1'sing1.36Å1.34Å
N1'C2'doub1.34Å1.38Å
C2'N2'sing1.33Å1.35Å
C2'N3'sing1.37Å1.36Å
N2'H2'2sing0.88Å1.00Å
N2'H2'1sing0.88Å1.00Å
N3'C4'sing1.39Å1.35Å
C4'O4'doub1.23Å1.38Å
MOOR1sing1.67Å2.28Å
MOOM2doub1.66Å1.70Å
MOOM1doub1.66Å1.68Å
OR1HR11sing0.86Å0.95Å
OR1HR12sing0.86Å0.95Å
H1N3'sing0.88Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6123.6°119.5°
C2N1C1'118.1°118.2°
N1C2N3118.2°119.0°
N1C2O2126.4°119.8°
C6N1C1'118.3°122.2°
N1C6C5117.8°121.8°
N1C6H6121.1°118.9°
N1C1'C2D123.1°113.4°
N1C1'O4D120.6°109.3°
N1C1'H1'106.0°109.5°
N3C2O2115.4°121.2°
C2N3C4125.3°120.9°
N3C4C5113.7°120.9°
N3C4N4123.4°118.0°
C5C4N4123.0°121.1°
C4C5C6121.5°117.8°
C4C5H5119.3°121.2°
C4N4H42120.0°120.0°
C4N4H41120.0°120.6°
C6C5H5119.3°121.0°
C5C6H6121.1°119.2°
H42N4H41120.0°119.4°
C2DC1'O4D93.9°108.6°
C2DC1'H1'105.1°108.0°
C1'C2DO2'116.0°109.6°
C1'C2DC3'124.5°102.6°
C1'C2DH2'90.8°110.0°
O4DC1'H1'106.3°107.9°
C1'O4DC4D117.5°110.3°
O2'C2DC3'119.4°114.4°
O2'C2DH2'90.9°110.1°
C2DO2'H2O1109.5°110.9°
C3'C2DH2'90.8°109.9°
C2DC3'C4D89.9°103.2°
C2DC3'O3'89.5°112.0°
C2DC3'H3'119.2°109.2°
C4DC3'O3'108.9°111.4°
C4DC3'H3'118.7°111.0°
C3'C4DO4D113.4°104.5°
C3'C4DC5'112.7°116.3°
C3'C4DH4D105.0°109.3°
O3'C3'H3'122.7°109.9°
C3'O3'H3O1109.5°110.8°
O4DC4DC5'113.3°109.7°
O4DC4DH4D106.5°108.8°
C5'C4DH4D105.1°107.9°
C4DC5'O5'95.4°109.8°
C4DC5'H5'2112.8°109.3°
C4DC5'H5'1112.9°109.9°
O5'C5'H5'2112.8°109.9°
O5'C5'H5'1112.9°109.8°
C5'O5'PA112.1°123.5°
H5'2C5'H5'1109.5°108.2°
O5'PAO1A110.6°115.7°
O5'PAO2A106.7°107.7°
O5'PAO3A114.6°104.4°
O1APAO2A103.4°114.0°
O1APAO3A111.2°109.0°
O2APAO3A109.7°105.0°
PAO2AHOA2109.5°113.2°
PAO3APB135.0°133.1°
O3APBO1B101.5°109.2°
O3APBO2B97.5°105.2°
O3APBO3B93.8°104.8°
O1BPBO2B136.3°113.7°
O1BPBO3B113.4°114.6°
O2BPBO3B104.0°108.5°
PBO2BHOB2109.5°113.1°
PBO3BC10123.0°123.1°
O3BC10C9'113.8°110.2°
O3BC10H102108.4°109.9°
O3BC10H101108.4°110.0°
C9'C10H102108.4°109.5°
C9'C10H101108.4°109.2°
C10C9'C8'113.6°112.8°
C10C9'O9'104.3°104.1°
C10C9'H9'108.9°108.6°
H102C10H101109.5°108.0°
C8'C9'O9'111.7°114.1°
C8'C9'H9'108.4°107.8°
C9'C8'S8'118.4°120.2°
C9'C8'C7'121.5°121.6°
O9'C9'H9'109.9°109.3°
C9'O9'C7113.5°121.7°
S8'C8'C7'120.1°118.2°
C8'S8'MO106.2°104.3°
C8'C7'S7'116.8°120.1°
C8'C7'C6'118.7°122.6°
S8'MOS7'80.3°81.3°
S8'MOOR1145.7°175.1°
S8'MOOM285.4°89.4°
S8'MOOM1100.6°91.7°
S7'C7'C6'124.5°117.3°
C7'S7'MO112.2°103.9°
C7'C6'C7112.5°112.2°
C7'C6'N5'99.5°110.4°
C7'C6'H6'108.7°107.5°
S7'MOOR187.6°94.0°
S7'MOOM2153.4°89.4°
S7'MOOM199.0°172.9°
C7C6'N5'118.1°112.3°
C7C6'H6'108.4°106.4°
C6'C7O9'105.0°111.7°
C6'C7N8'97.2°112.4°
C6'C7H7112.5°108.7°
N5'C6'H6'109.1°107.8°
C6'N5'C4A106.2°122.7°
C6'N5'H5'110.3°119.6°
O9'C7N8'112.3°107.5°
O9'C7H7114.3°108.6°
N8'C7H7114.0°107.7°
C7N8'C4B136.9°122.8°
C7N8'H8'102.2°119.0°
C4AN5'H5'110.3°117.8°
N5'C4AC4B138.0°119.5°
N5'C4AC4'117.6°121.2°
C4BC4AC4'104.3°119.2°
C4AC4BN8'98.7°120.9°
C4AC4BN1'131.0°122.3°
C4AC4'N3'132.1°114.9°
C4AC4'O4'128.8°125.3°
C4BN8'H8'102.2°118.2°
N8'C4BN1'130.3°116.7°
C4BN1'C2'115.9°118.0°
N1'C2'N2'100.3°119.2°
N1'C2'N3'120.8°123.0°
N2'C2'N3'139.0°117.9°
C2'N2'H2'2120.0°120.1°
C2'N2'H2'1120.0°120.6°
C2'N3'C4'115.9°122.5°
C2'N3'H1122.1°119.1°
H2'2N2'H2'1120.0°119.3°
N3'C4'O4'99.1°119.7°
C4'N3'H1122.1°118.4°
OR1MOOM291.9°89.4°
OR1MOOM1113.0°93.0°
MOOR1HR11109.5°110.7°
MOOR1HR12109.5°113.3°
OM2MOOM1105.6°89.5°
HR11OR1HR12109.4°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1'179.1°179.4°
N1C2N3O2179.7°179.9°
N1C2N3C40.1°0.3°
C2N1C6C50.2°0.5°
C2N1C6H6179.8°179.6°
C2N1C1'C2D106.3°93.4°
C2N1C1'O4D135.0°145.3°
C2N1C1'H1'14.3°27.3°
C6N1C2N30.4°0.5°
C6N1C2O2179.9°179.7°
N1C6C5C40.3°0.3°
N1C6C5H6180.0°179.9°
N1C6C5H5179.7°179.8°
C6N1C1'C2D72.8°86.0°
C6N1C1'O4D45.9°35.3°
C6N1C1'H1'166.5°153.3°
C1'N1C2N3178.7°179.8°
C1'N1C2O21.0°0.3°
C1'N1C6C5178.9°179.8°
C1'N1C6H61.1°0.3°
N1C1'C2DO4D130.9°121.7°
N1C1'C2DH1'121.1°121.5°
N1C1'O4DH1'120.4°119.1°
N1C1'C2DO2'52.9°130.5°
N1C1'C2DC3'130.0°107.5°
N1C1'C2DH2'38.5°9.3°
N1C1'O4DC4D126.1°131.1°
C2N3C4C50.4°0.1°
C2N3C4N4179.8°180.0°
O2C2N3C4179.8°179.9°
N3C4C5N4179.8°179.9°
N3C4C5C60.6°0.1°
N3C4C5H5179.4°180.0°
N3C4N4H420.0°0.0°
N3C4N4H41180.0°180.0°
C4C5C6H5180.0°179.9°
C4C5C6H6179.7°179.8°
C5C4N4H42179.8°179.9°
C5C4N4H410.2°0.0°
N4C4C5C6179.6°180.0°
N4C4C5H50.4°0.0°
C4N4H42H41180.0°179.9°
H5C5C6H60.3°0.1°
C2DC1'O4DH1'107.0°116.8°
C1'C2DO2'C3'177.2°114.6°
C1'C2DO2'H2'91.4°121.1°
C1'C2DC3'H2'91.6°117.0°
C1'C2DO2'H2O1180.0°172.3°
C1'C2DC3'C4D4.1°28.2°
C1'C2DC3'O3'104.7°148.1°
C1'C2DC3'H3'127.4°89.9°
C2DC1'O4DC4D6.5°6.9°
O4DC1'C2DO2'176.2°107.8°
O4DC1'C2DC3'0.8°14.2°
O4DC1'C2DH2'92.4°131.0°
C1'O4DC4DC3'10.6°25.3°
C1'O4DC4DC5'119.5°150.8°
C1'O4DC4DH4D125.5°91.4°
H1'C1'C2DO2'68.1°9.0°
H1'C1'C2DC3'108.9°130.9°
H1'C1'C2DH2'159.5°112.2°
H1'C1'O4DC4D113.5°109.9°
O2'C2DC3'H2'91.5°124.4°
O2'C2DC3'C4D179.0°90.4°
O2'C2DC3'O3'72.2°29.5°
O2'C2DC3'H3'55.7°151.5°
C3'C2DO2'H2O12.9°73.1°
C2DC3'C4DO3'89.4°120.3°
C2DC3'C4DH3'123.7°116.9°
C2DC3'O3'H3'125.0°121.6°
C2DC3'C4DO4D7.6°33.1°
C2DC3'C4DC5'122.7°154.2°
C2DC3'C4DH4D123.4°83.2°
C2DC3'O3'H3O1180.0°169.7°
H2'C2DO2'H2O188.6°51.2°
H2'C2DC3'C4D87.5°145.2°
H2'C2DC3'O3'163.7°94.9°
H2'C2DC3'H3'35.8°27.0°
C4DC3'O3'H3'145.3°123.5°
C3'C4DO4DC5'130.0°125.4°
C3'C4DO4DH4D114.9°116.7°
C3'C4DC5'H4D113.8°123.2°
C4DC3'O3'H3O190.3°75.3°
C3'C4DC5'O5'61.1°74.5°
C3'C4DC5'H5'2178.7°165.0°
C3'C4DC5'H5'156.5°46.4°
O3'C3'C4DO4D81.8°153.4°
O3'C3'C4DC5'147.9°85.5°
O3'C3'C4DH4D34.1°37.1°
H3'C3'C4DO4D131.3°83.8°
H3'C3'C4DC5'0.9°37.4°
H3'C3'C4DH4D112.9°159.9°
H3'C3'O3'H3O155.0°48.1°
O4DC4DC5'H4D115.8°118.4°
O4DC4DC5'O5'69.3°167.2°
O4DC4DC5'H5'248.2°46.6°
O4DC4DC5'H5'1173.0°72.0°
C4DC5'O5'H5'2117.6°120.2°
C4DC5'O5'H5'1117.6°120.9°
C4DC5'H5'2H5'1126.6°119.6°
C4DC5'O5'PA173.8°111.5°
H4DC4DC5'O5'174.8°48.8°
H4DC4DC5'H5'267.6°71.8°
H4DC4DC5'H5'157.2°169.6°
O5'C5'H5'2H5'1126.6°119.9°
C5'O5'PAO1A156.6°38.3°
C5'O5'PAO2A91.7°90.7°
C5'O5'PAO3A30.0°158.0°
H5'2C5'O5'PA68.6°8.7°
H5'1C5'O5'PA56.2°127.6°
O5'PAO1AO2A113.8°125.8°
O5'PAO1AO3A128.5°117.2°
O5'PAO2AO3A124.7°110.8°
O5'PAO2AHOA2116.7°179.8°
O5'PAO3APB72.4°26.0°
O1APAO2AO3A118.7°119.2°
O1APAO2AHOA20.0°50.2°
O1APAO3APB53.9°98.2°
O2APAO3APB167.7°139.2°
O3APAO2AHOA2118.6°69.0°
PAO3APBO1B94.0°77.0°
PAO3APBO2B46.4°45.4°
PAO3APBO3B151.1°159.7°
O3APBO1BO2B113.9°117.1°
O3APBO1BO3B99.4°117.2°
O3APBO2BO3B95.9°111.8°
O3APBO2BHOB2115.4°179.9°
O3APBO3BC1095.3°57.1°
O1BPBO2BO3B148.7°128.8°
O1BPBO2BHOB20.0°60.7°
O1BPBO3BC109.0°176.8°
O2BPBO3BC10166.0°54.9°
O3BPBO2BHOB2148.7°68.1°
PBO3BC10C9'128.8°158.6°
PBO3BC10H102110.5°37.8°
PBO3BC10H1018.2°81.0°
O3BC10C9'H102120.6°121.0°
O3BC10C9'H101120.7°120.9°
O3BC10H102H101118.1°120.1°
O3BC10C9'C8'170.0°167.0°
O3BC10C9'O9'48.2°68.8°
O3BC10C9'H9'69.1°47.6°
C9'C10H102H101118.0°118.8°
C10C9'C8'O9'117.6°118.6°
C10C9'C8'H9'121.2°119.8°
C10C9'O9'H9'116.6°115.9°
C10C9'C8'S8'56.8°67.1°
C10C9'C8'C7'124.6°112.5°
C10C9'O9'C7171.2°147.8°
H102C10C9'C8'49.4°46.0°
H102C10C9'O9'72.4°170.3°
H102C10C9'H9'170.3°73.4°
H101C10C9'C8'69.3°72.1°
H101C10C9'O9'168.9°52.2°
H101C10C9'H9'51.6°168.5°
C8'C9'O9'H9'120.3°120.7°
C9'C8'S8'C7'178.6°179.5°
C9'C8'S8'MO161.1°149.4°
C9'C8'C7'S7'172.8°171.6°
C9'C8'C7'C6'6.4°10.2°
C8'C9'O9'C748.1°24.4°
O9'C9'C8'S8'174.4°174.4°
O9'C9'C8'C7'7.1°6.1°
C9'O9'C7C6'71.0°47.0°
C9'O9'C7N8'175.5°170.8°
C9'O9'C7H752.7°72.9°
H9'C9'C8'S8'64.4°52.8°
H9'C9'C8'C7'114.1°127.7°
H9'C9'O9'C772.2°96.3°
S8'C8'C7'S7'8.7°7.9°
S8'C8'C7'C6'172.2°170.3°
C8'S8'MOS7'17.7°29.8°
C8'S8'MOOR188.7°16.3°
C8'S8'MOOM2175.2°59.7°
C8'S8'MOOM179.8°149.2°
C7'C8'S8'MO20.3°30.2°
C8'C7'S7'C6'179.1°178.3°
C8'C7'S7'MO8.4°18.2°
C8'C7'C6'C717.4°12.8°
C8'C7'C6'N5'108.6°113.3°
C8'C7'C6'H6'137.4°129.4°
S8'MOS7'C7'15.1°26.5°
S8'MOS7'OR1147.8°178.9°
S8'MOS7'OM258.4°89.5°
S8'MOS7'OM199.3°7.9°
S8'MOOR1OM284.6°76.0°
S8'MOOR1OM1167.6°165.5°
S8'MOOM2OM199.7°91.7°
S8'MOOR1HR1184.5°46.1°
S8'MOOR1HR1235.4°166.1°
S7'C7'C6'C7163.5°165.4°
S7'C7'C6'N5'70.5°68.5°
S7'C7'C6'H6'43.5°48.8°
C7'S7'MOOR1162.9°152.4°
C7'S7'MOOM273.4°63.0°
C7'S7'MOOM184.2°18.6°
C6'C7'S7'MO170.7°163.5°
C7'C6'C7N5'115.1°125.1°
C7'C6'C7H6'120.2°117.2°
C7'C6'N5'H6'113.7°117.1°
C7'C6'C7O9'53.2°38.9°
C7'C6'C7N8'168.7°159.9°
C7'C6'C7H771.6°80.9°
C7'C6'N5'C4A162.8°152.8°
C7'C6'N5'H5'43.3°27.5°
S7'MOOR1OM2153.4°89.4°
S7'MOOR1OM198.8°178.9°
S7'MOOM2OM1157.0°173.0°
S7'MOOR1HR11153.4°32.7°
S7'MOOR1HR1233.4°152.7°
C7C6'N5'H6'124.3°116.9°
C6'C7O9'N8'104.5°123.8°
C6'C7O9'H7123.7°119.9°
C6'C7N8'H7118.5°119.8°
C7C6'N5'C4A40.8°26.7°
C7C6'N5'H5'78.7°153.5°
C6'C7N8'C4B51.2°27.7°
C6'C7N8'H8'72.2°152.1°
N5'C6'C7O9'61.9°86.1°
N5'C6'C7N8'53.5°34.8°
N5'C6'C7H7173.2°154.0°
C6'N5'C4AH5'119.5°179.8°
C6'N5'C4AC4B9.9°7.4°
C6'N5'C4AC4'170.3°169.4°
H6'C6'C7O9'173.4°156.2°
H6'C6'C7N8'71.2°82.9°
H6'C6'C7H748.6°36.3°
H6'C6'N5'C4A83.6°90.1°
H6'C6'N5'H5'157.0°89.6°
O9'C7N8'H7132.0°116.9°
O9'C7N8'C4B58.3°95.6°
O9'C7N8'H8'178.4°84.6°
C7N8'C4BC4A26.1°8.3°
C7N8'C4BH8'123.4°179.8°
C7N8'C4BN1'153.5°168.5°
H7C7N8'C4B169.7°147.5°
H7C7N8'H8'46.4°32.3°
N5'C4AC4BC4'179.9°176.9°
N5'C4AC4BN8'0.5°3.6°
N5'C4AC4BN1'179.8°179.8°
N5'C4AC4'N3'179.8°178.8°
N5'C4AC4'O4'0.3°1.9°
H5'N5'C4AC4B109.6°172.8°
H5'N5'C4AC4'70.2°10.4°
C4AC4BN8'N1'179.7°176.8°
C4AC4BN8'H8'97.2°171.5°
C4AC4BN1'C2'0.1°2.3°
C4BC4AC4'N3'0.3°2.0°
C4BC4AC4'O4'179.6°178.7°
C4'C4AC4BN8'179.3°179.6°
C4'C4AC4BN1'0.4°2.9°
C4AC4'N3'C2'0.0°0.7°
C4AC4'N3'O4'180.0°179.3°
C4AC4'N3'H1180.0°179.3°
N8'C4BN1'C2'179.5°179.0°
H8'N8'C4BN1'83.1°11.7°
C4BN1'C2'N2'179.8°179.3°
C4BN1'C2'N3'0.3°0.8°
N1'C2'N2'N3'179.8°179.9°
N1'C2'N2'H2'20.0°0.0°
N1'C2'N2'H2'1180.0°180.0°
N1'C2'N3'C4'0.4°0.1°
N1'C2'N3'H1179.7°180.0°
C2'N2'H2'2H2'1180.0°180.0°
N2'C2'N3'C4'179.8°180.0°
N2'C2'N3'H10.2°0.0°
N3'C2'N2'H2'2179.8°180.0°
N3'C2'N2'H2'10.2°0.1°
C2'N3'C4'H1180.0°180.0°
C2'N3'C4'O4'180.0°180.0°
O4'C4'N3'H10.0°0.0°
OR1MOOM2OM1114.5°93.1°
MOOR1HR11HR12120.0°123.8°
OM2MOOR1HR110.0°122.1°
OM2MOOR1HR12120.0°117.9°
OM1MOOR1HR11107.8°148.4°
OM1MOOR1HR12132.2°28.4°

258222

PDB entries from 2026-08-19

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