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PCD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing0.00Å1.37Å
N1C6sing0.00Å1.34Å
N1C1'sing0.00Å1.45Å
C2N3sing0.00Å1.35Å
C2O2doub0.00Å1.24Å
N3C4doub0.00Å1.34Å
C4C5sing0.00Å1.49Å
C4N4sing0.00Å1.31Å
C5C6doub0.00Å1.37Å
C5H5sing0.00Å1.08Å
C6H6sing0.00Å1.08Å
N4H42sing0.00Å1.00Å
N4H41sing0.00Å1.00Å
C1'C2Dsing0.00Å1.54Å
C1'O4Dsing0.00Å1.42Å
C1'H1'sing0.00Å1.10Å
C2DO2'sing0.00Å1.42Å
C2DC3'sing0.00Å1.55Å
C2DH2'sing0.00Å1.10Å
O2'H2O1sing0.00Å0.95Å
C3'C4Dsing0.00Å1.58Å
C3'O3'sing0.00Å1.40Å
C3'H3'sing0.00Å1.10Å
C4DO4Dsing0.00Å1.44Å
C4DC5'sing0.00Å1.56Å
C4DH4Dsing0.00Å1.10Å
O3'H3O1sing0.00Å0.95Å
C5'O5'sing0.00Å1.44Å
C5'H5'2sing0.00Å1.10Å
C5'H5'1sing0.00Å1.10Å
O5'PAsing0.00Å1.60Å
PAO1Adoub0.00Å1.59Å
PAO2Asing0.00Å1.54Å
PAO3Asing0.00Å1.66Å
O2AHOA2sing0.00Å0.95Å
O3APBsing0.00Å1.59Å
PBO1Bdoub0.00Å1.56Å
PBO2Bsing0.00Å1.56Å
PBO3Bsing0.00Å1.56Å
O2BHOB2sing0.00Å0.95Å
O3BC10sing0.00Å1.41Å
C10C9'sing0.00Å1.49Å
C10H102sing0.00Å1.10Å
C10H101sing0.00Å1.10Å
C9'C8'sing0.00Å1.54Å
C9'O9'sing0.00Å1.42Å
C9'H9'sing0.00Å1.10Å
C8'S8'sing0.00Å1.79Å
C8'C7'doub0.00Å1.36Å
S8'MOsing0.00Å2.44Å
C7'S7'sing0.00Å1.77Å
C7'C6'sing0.00Å1.52Å
S7'MOsing0.00Å2.32Å
C6'C7sing0.00Å1.54Å
C6'N5'sing0.00Å1.49Å
C6'H6'sing0.00Å1.10Å
C7O9'sing0.00Å1.43Å
C7N8'sing0.00Å1.45Å
C7H7sing0.00Å1.10Å
N5'C4Asing0.00Å1.41Å
N5'H5'sing0.00Å1.00Å
C4AC4Bdoub0.00Å1.42ÅAromatic
C4AC4'sing0.00Å1.37ÅAromatic
N8'C4Bsing0.00Å1.42Å
N8'H8'sing0.00Å1.00Å
C4BN1'sing0.00Å1.34ÅAromatic
N1'C2'doub0.00Å1.38ÅAromatic
C2'N2'sing0.00Å1.35Å
C2'N3'sing0.00Å1.36ÅAromatic
N2'H2'2sing0.00Å1.00Å
N2'H2'1sing0.00Å1.00Å
N3'C4'doub0.00Å1.35ÅAromatic
C4'O4'sing0.00Å1.38Å
O4'H4'sing0.00Å0.95Å
MOOR1sing0.00Å2.28Å
MOOM2doub0.00Å1.70Å
MOOM1doub0.00Å1.68Å
OR1HR11sing0.00Å0.95Å
OR1HR12sing0.00Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6123.6°90.0°
C2N1C1'118.1°90.0°
N1C2N3118.2°90.0°
N1C2O2126.4°90.0°
C6N1C1'118.3°90.0°
N1C6C5117.8°90.0°
N1C6H6121.1°90.0°
N1C1'C2D123.1°90.0°
N1C1'O4D120.6°90.0°
N1C1'H1'106.0°90.0°
N3C2O2115.4°90.0°
C2N3C4125.3°90.0°
N3C4C5113.7°90.0°
N3C4N4123.4°90.0°
C5C4N4123.0°90.0°
C4C5C6121.5°90.0°
C4C5H5119.3°90.0°
C4N4H42120.0°90.0°
C4N4H41120.0°90.0°
C6C5H5119.3°90.0°
C5C6H6121.1°90.0°
H42N4H41120.0°90.0°
C2DC1'O4D93.9°90.0°
C2DC1'H1'105.1°90.0°
C1'C2DO2'116.0°90.0°
C1'C2DC3'124.5°90.0°
C1'C2DH2'90.8°90.0°
O4DC1'H1'106.3°90.0°
C1'O4DC4D117.5°90.0°
O2'C2DC3'119.4°90.0°
O2'C2DH2'90.9°90.0°
C2DO2'H2O1109.5°90.0°
C3'C2DH2'90.8°90.0°
C2DC3'C4D89.9°90.0°
C2DC3'O3'89.5°90.0°
C2DC3'H3'119.2°90.0°
C4DC3'O3'108.9°90.0°
C4DC3'H3'118.7°90.0°
C3'C4DO4D113.4°90.0°
C3'C4DC5'112.7°90.0°
C3'C4DH4D105.0°90.0°
O3'C3'H3'122.7°90.0°
C3'O3'H3O1109.5°90.0°
O4DC4DC5'113.3°90.0°
O4DC4DH4D106.5°90.0°
C5'C4DH4D105.1°90.0°
C4DC5'O5'95.4°90.0°
C4DC5'H5'2112.8°90.0°
C4DC5'H5'1112.9°90.0°
O5'C5'H5'2112.8°90.0°
O5'C5'H5'1112.9°90.0°
C5'O5'PA112.1°90.0°
H5'2C5'H5'1109.5°90.0°
O5'PAO1A110.6°90.0°
O5'PAO2A106.7°90.0°
O5'PAO3A114.6°90.0°
O1APAO2A103.4°90.0°
O1APAO3A111.2°90.0°
O2APAO3A109.7°90.0°
PAO2AHOA2109.5°90.0°
PAO3APB135.0°90.0°
O3APBO1B101.5°90.0°
O3APBO2B97.5°90.0°
O3APBO3B93.8°90.0°
O1BPBO2B136.3°90.0°
O1BPBO3B113.4°90.0°
O2BPBO3B104.0°90.0°
PBO2BHOB2109.5°90.0°
PBO3BC10123.0°90.0°
O3BC10C9'113.8°90.0°
O3BC10H102108.4°90.0°
O3BC10H101108.4°90.0°
C9'C10H102108.4°90.0°
C9'C10H101108.4°90.0°
C10C9'C8'113.6°90.0°
C10C9'O9'104.3°90.0°
C10C9'H9'108.9°90.0°
H102C10H101109.5°90.0°
C8'C9'O9'111.7°90.0°
C8'C9'H9'108.4°90.0°
C9'C8'S8'118.4°90.0°
C9'C8'C7'121.5°90.0°
O9'C9'H9'109.9°90.0°
C9'O9'C7113.5°90.0°
S8'C8'C7'120.1°90.0°
C8'S8'MO106.2°90.0°
C8'C7'S7'116.8°90.0°
C8'C7'C6'118.7°90.0°
S8'MOS7'80.3°90.0°
S8'MOOR1145.7°90.0°
S8'MOOM285.4°90.0°
S8'MOOM1100.6°90.0°
S7'C7'C6'124.5°90.0°
C7'S7'MO112.2°90.0°
C7'C6'C7112.5°90.0°
C7'C6'N5'99.5°90.0°
C7'C6'H6'108.7°90.0°
S7'MOOR187.6°90.0°
S7'MOOM2153.4°90.0°
S7'MOOM199.0°90.0°
C7C6'N5'118.1°90.0°
C7C6'H6'108.4°90.0°
C6'C7O9'105.0°90.0°
C6'C7N8'97.2°90.0°
C6'C7H7112.5°90.0°
N5'C6'H6'109.1°90.0°
C6'N5'C4A106.2°90.0°
C6'N5'H5'110.3°90.0°
O9'C7N8'112.3°90.0°
O9'C7H7114.3°90.0°
N8'C7H7114.0°90.0°
C7N8'C4B136.9°90.0°
C7N8'H8'102.2°90.0°
C4AN5'H5'110.3°90.0°
N5'C4AC4B138.0°90.0°
N5'C4AC4'117.6°90.0°
C4BC4AC4'104.3°90.0°
C4AC4BN8'98.7°90.0°
C4AC4BN1'131.0°90.0°
C4AC4'N3'132.1°90.0°
C4AC4'O4'128.8°90.0°
C4BN8'H8'102.2°90.0°
N8'C4BN1'130.3°90.0°
C4BN1'C2'115.9°90.0°
N1'C2'N2'100.3°90.0°
N1'C2'N3'120.8°90.0°
N2'C2'N3'139.0°90.0°
C2'N2'H2'2109.5°90.0°
C2'N2'H2'1109.5°90.0°
C2'N3'C4'115.9°90.0°
H2'2N2'H2'1109.5°90.0°
N3'C4'O4'99.1°90.0°
C4'O4'H4'109.5°90.0°
OR1MOOM291.9°90.0°
OR1MOOM1113.0°90.0°
MOOR1HR11109.5°90.0°
MOOR1HR12109.5°90.0°
OM2MOOM1105.6°90.0°
HR11OR1HR12109.4°90.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1'179.1°90.0°
N1C2N3O2179.7°90.0°
N1C2N3C40.1°90.0°
C2N1C6C50.2°90.0°
C2N1C6H6179.8°90.0°
C2N1C1'C2D106.3°90.0°
C2N1C1'O4D135.0°90.0°
C2N1C1'H1'14.3°90.0°
C6N1C2N30.4°90.0°
C6N1C2O2179.9°90.0°
N1C6C5C40.3°90.0°
N1C6C5H6180.0°90.0°
N1C6C5H5179.7°90.0°
C6N1C1'C2D72.8°90.0°
C6N1C1'O4D45.9°90.0°
C6N1C1'H1'166.5°90.0°
C1'N1C2N3178.7°90.0°
C1'N1C2O21.0°90.0°
C1'N1C6C5178.9°90.0°
C1'N1C6H61.1°90.0°
N1C1'C2DO4D130.9°90.0°
N1C1'C2DH1'121.1°90.0°
N1C1'O4DH1'120.4°90.0°
N1C1'C2DO2'52.9°90.0°
N1C1'C2DC3'130.0°90.0°
N1C1'C2DH2'38.5°90.0°
N1C1'O4DC4D126.1°90.0°
C2N3C4C50.4°90.0°
C2N3C4N4179.8°90.0°
O2C2N3C4179.8°90.0°
N3C4C5N4179.8°90.0°
N3C4C5C60.6°90.0°
N3C4C5H5179.4°90.0°
N3C4N4H420.0°90.0°
N3C4N4H41180.0°90.0°
C4C5C6H5180.0°90.0°
C4C5C6H6179.7°90.0°
C5C4N4H42179.8°90.0°
C5C4N4H410.2°90.0°
N4C4C5C6179.6°90.0°
N4C4C5H50.4°90.0°
C4N4H42H41180.0°90.0°
H5C5C6H60.3°90.0°
C2DC1'O4DH1'107.0°90.0°
C1'C2DO2'C3'177.2°90.0°
C1'C2DO2'H2'91.4°90.0°
C1'C2DC3'H2'91.6°90.0°
C1'C2DO2'H2O1180.0°90.0°
C1'C2DC3'C4D4.1°90.0°
C1'C2DC3'O3'104.7°90.0°
C1'C2DC3'H3'127.4°90.0°
C2DC1'O4DC4D6.5°90.0°
O4DC1'C2DO2'176.2°90.0°
O4DC1'C2DC3'0.8°90.0°
O4DC1'C2DH2'92.4°90.0°
C1'O4DC4DC3'10.6°90.0°
C1'O4DC4DC5'119.5°90.0°
C1'O4DC4DH4D125.5°90.0°
H1'C1'C2DO2'68.1°90.0°
H1'C1'C2DC3'108.9°90.0°
H1'C1'C2DH2'159.5°90.0°
H1'C1'O4DC4D113.5°90.0°
O2'C2DC3'H2'91.5°90.0°
O2'C2DC3'C4D179.0°90.0°
O2'C2DC3'O3'72.2°90.0°
O2'C2DC3'H3'55.7°90.0°
C3'C2DO2'H2O12.9°90.0°
C2DC3'C4DO3'89.4°90.0°
C2DC3'C4DH3'123.7°90.0°
C2DC3'O3'H3'125.0°90.0°
C2DC3'C4DO4D7.6°90.0°
C2DC3'C4DC5'122.7°90.0°
C2DC3'C4DH4D123.4°90.0°
C2DC3'O3'H3O1180.0°90.0°
H2'C2DO2'H2O188.6°90.0°
H2'C2DC3'C4D87.5°90.0°
H2'C2DC3'O3'163.7°90.0°
H2'C2DC3'H3'35.8°90.0°
C4DC3'O3'H3'145.3°90.0°
C3'C4DO4DC5'130.0°90.0°
C3'C4DO4DH4D114.9°90.0°
C3'C4DC5'H4D113.8°90.0°
C4DC3'O3'H3O190.3°90.0°
C3'C4DC5'O5'61.1°90.0°
C3'C4DC5'H5'2178.7°90.0°
C3'C4DC5'H5'156.5°90.0°
O3'C3'C4DO4D81.8°90.0°
O3'C3'C4DC5'147.9°90.0°
O3'C3'C4DH4D34.1°90.0°
H3'C3'C4DO4D131.3°90.0°
H3'C3'C4DC5'0.9°90.0°
H3'C3'C4DH4D112.9°90.0°
H3'C3'O3'H3O155.0°90.0°
O4DC4DC5'H4D115.8°90.0°
O4DC4DC5'O5'69.3°90.0°
O4DC4DC5'H5'248.2°90.0°
O4DC4DC5'H5'1173.0°90.0°
C4DC5'O5'H5'2117.6°90.0°
C4DC5'O5'H5'1117.6°90.0°
C4DC5'H5'2H5'1126.6°90.0°
C4DC5'O5'PA173.8°90.0°
H4DC4DC5'O5'174.8°90.0°
H4DC4DC5'H5'267.6°90.0°
H4DC4DC5'H5'157.2°90.0°
O5'C5'H5'2H5'1126.6°90.0°
C5'O5'PAO1A156.6°90.0°
C5'O5'PAO2A91.7°90.0°
C5'O5'PAO3A30.0°90.0°
H5'2C5'O5'PA68.6°90.0°
H5'1C5'O5'PA56.2°90.0°
O5'PAO1AO2A113.8°90.0°
O5'PAO1AO3A128.5°90.0°
O5'PAO2AO3A124.7°90.0°
O5'PAO2AHOA2116.7°90.0°
O5'PAO3APB72.4°90.0°
O1APAO2AO3A118.7°90.0°
O1APAO2AHOA20.0°90.0°
O1APAO3APB53.9°90.0°
O2APAO3APB167.7°90.0°
O3APAO2AHOA2118.6°90.0°
PAO3APBO1B94.0°90.0°
PAO3APBO2B46.4°90.0°
PAO3APBO3B151.1°90.0°
O3APBO1BO2B113.9°90.0°
O3APBO1BO3B99.4°90.0°
O3APBO2BO3B95.9°90.0°
O3APBO2BHOB2115.4°90.0°
O3APBO3BC1095.3°90.0°
O1BPBO2BO3B148.7°90.0°
O1BPBO2BHOB20.0°90.0°
O1BPBO3BC109.0°90.0°
O2BPBO3BC10166.0°90.0°
O3BPBO2BHOB2148.7°90.0°
PBO3BC10C9'128.8°90.0°
PBO3BC10H102110.5°90.0°
PBO3BC10H1018.2°90.0°
O3BC10C9'H102120.6°90.0°
O3BC10C9'H101120.7°90.0°
O3BC10H102H101118.1°90.0°
O3BC10C9'C8'170.0°90.0°
O3BC10C9'O9'48.2°90.0°
O3BC10C9'H9'69.1°90.0°
C9'C10H102H101118.0°90.0°
C10C9'C8'O9'117.6°90.0°
C10C9'C8'H9'121.2°90.0°
C10C9'O9'H9'116.6°90.0°
C10C9'C8'S8'56.8°90.0°
C10C9'C8'C7'124.6°90.0°
C10C9'O9'C7171.2°90.0°
H102C10C9'C8'49.4°90.0°
H102C10C9'O9'72.4°90.0°
H102C10C9'H9'170.3°90.0°
H101C10C9'C8'69.3°90.0°
H101C10C9'O9'168.9°90.0°
H101C10C9'H9'51.6°90.0°
C8'C9'O9'H9'120.3°90.0°
C9'C8'S8'C7'178.6°90.0°
C9'C8'S8'MO161.1°90.0°
C9'C8'C7'S7'172.8°90.0°
C9'C8'C7'C6'6.4°90.0°
C8'C9'O9'C748.1°90.0°
O9'C9'C8'S8'174.4°90.0°
O9'C9'C8'C7'7.1°90.0°
C9'O9'C7C6'71.0°90.0°
C9'O9'C7N8'175.5°90.0°
C9'O9'C7H752.7°90.0°
H9'C9'C8'S8'64.4°90.0°
H9'C9'C8'C7'114.1°90.0°
H9'C9'O9'C772.2°90.0°
S8'C8'C7'S7'8.7°90.0°
S8'C8'C7'C6'172.2°90.0°
C8'S8'MOS7'17.7°90.0°
C8'S8'MOOR188.7°90.0°
C8'S8'MOOM2175.2°90.0°
C8'S8'MOOM179.8°90.0°
C7'C8'S8'MO20.3°90.0°
C8'C7'S7'C6'179.1°90.0°
C8'C7'S7'MO8.4°90.0°
C8'C7'C6'C717.4°90.0°
C8'C7'C6'N5'108.6°90.0°
C8'C7'C6'H6'137.4°90.0°
S8'MOS7'C7'15.1°90.0°
S8'MOS7'OR1147.8°90.0°
S8'MOS7'OM258.4°90.0°
S8'MOS7'OM199.3°90.0°
S8'MOOR1OM284.6°90.0°
S8'MOOR1OM1167.6°90.0°
S8'MOOM2OM199.7°90.0°
S8'MOOR1HR1184.5°90.0°
S8'MOOR1HR1235.4°90.0°
S7'C7'C6'C7163.5°90.0°
S7'C7'C6'N5'70.5°90.0°
S7'C7'C6'H6'43.5°90.0°
C7'S7'MOOR1162.9°90.0°
C7'S7'MOOM273.4°90.0°
C7'S7'MOOM184.2°90.0°
C6'C7'S7'MO170.7°90.0°
C7'C6'C7N5'115.1°90.0°
C7'C6'C7H6'120.2°90.0°
C7'C6'N5'H6'113.7°90.0°
C7'C6'C7O9'53.2°90.0°
C7'C6'C7N8'168.7°90.0°
C7'C6'C7H771.6°90.0°
C7'C6'N5'C4A162.8°90.0°
C7'C6'N5'H5'43.3°90.0°
S7'MOOR1OM2153.4°90.0°
S7'MOOR1OM198.8°90.0°
S7'MOOM2OM1157.0°90.0°
S7'MOOR1HR11153.4°90.0°
S7'MOOR1HR1233.4°90.0°
C7C6'N5'H6'124.3°90.0°
C6'C7O9'N8'104.5°90.0°
C6'C7O9'H7123.7°90.0°
C6'C7N8'H7118.5°90.0°
C7C6'N5'C4A40.8°90.0°
C7C6'N5'H5'78.7°90.0°
C6'C7N8'C4B51.2°90.0°
C6'C7N8'H8'72.2°90.0°
N5'C6'C7O9'61.9°90.0°
N5'C6'C7N8'53.5°90.0°
N5'C6'C7H7173.2°90.0°
C6'N5'C4AH5'119.5°90.0°
C6'N5'C4AC4B9.9°90.0°
C6'N5'C4AC4'170.3°90.0°
H6'C6'C7O9'173.4°90.0°
H6'C6'C7N8'71.2°90.0°
H6'C6'C7H748.6°90.0°
H6'C6'N5'C4A83.6°90.0°
H6'C6'N5'H5'157.0°90.0°
O9'C7N8'H7132.0°90.0°
O9'C7N8'C4B58.3°90.0°
O9'C7N8'H8'178.4°90.0°
C7N8'C4BC4A26.1°90.0°
C7N8'C4BH8'123.4°90.0°
C7N8'C4BN1'153.5°90.0°
H7C7N8'C4B169.7°90.0°
H7C7N8'H8'46.4°90.0°
N5'C4AC4BC4'179.9°90.0°
N5'C4AC4BN8'0.5°90.0°
N5'C4AC4BN1'179.8°90.0°
N5'C4AC4'N3'179.8°90.0°
N5'C4AC4'O4'0.3°90.0°
H5'N5'C4AC4B109.6°90.0°
H5'N5'C4AC4'70.2°90.0°
C4AC4BN8'N1'179.7°90.0°
C4AC4BN8'H8'97.2°90.0°
C4AC4BN1'C2'0.1°90.0°
C4BC4AC4'N3'0.3°90.0°
C4BC4AC4'O4'179.6°90.0°
C4'C4AC4BN8'179.3°90.0°
C4'C4AC4BN1'0.4°90.0°
C4AC4'N3'C2'0.0°90.0°
C4AC4'N3'O4'180.0°90.0°
C4AC4'O4'H4'180.0°90.0°
N8'C4BN1'C2'179.5°90.0°
H8'N8'C4BN1'83.1°90.0°
C4BN1'C2'N2'179.8°90.0°
C4BN1'C2'N3'0.3°90.0°
N1'C2'N2'N3'179.8°90.0°
N1'C2'N2'H2'20.0°90.0°
N1'C2'N2'H2'1120.0°90.0°
N1'C2'N3'C4'0.4°90.0°
C2'N2'H2'2H2'1120.0°90.0°
N2'C2'N3'C4'179.8°90.0°
N3'C2'N2'H2'2179.9°90.0°
N3'C2'N2'H2'159.8°90.0°
C2'N3'C4'O4'180.0°90.0°
N3'C4'O4'H4'0.0°90.0°
OR1MOOM2OM1114.5°90.0°
MOOR1HR11HR12120.0°90.0°
OM2MOOR1HR110.0°90.0°
OM2MOOR1HR12120.0°90.0°
OM1MOOR1HR11107.8°90.0°
OM1MOOR1HR12132.2°90.0°

224931

PDB entries from 2024-09-11

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