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Summary Geometry Related PDB entries

Obsolete: PCC

PCC was replaced with PCA on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.47Å	1.47Å
N	CD	sing	1.34Å	1.39Å
N	H	sing	0.97Å	1.00Å
CA	CB	sing	1.54Å	1.49Å
CA	C	sing	1.51Å	1.52Å
CA	HA	sing	1.09Å	1.10Å
CB	CG	sing	1.55Å	1.40Å
CB	HB2	sing	1.09Å	1.10Å
CB	HB3	sing	1.09Å	1.10Å
CG	CD	sing	1.51Å	1.44Å
CG	HG2	sing	1.09Å	1.10Å
CG	HG3	sing	1.09Å	1.10Å
CD	OE1	doub	1.21Å	1.28Å
C	O	doub	1.21Å	1.24Å
C	OXT	sing	1.34Å	27.38Å
OXT	HXT	sing	0.97Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	N	CD	112.6°	111.3°
CA	N	H	123.7°	124.4°
N	CA	CB	105.6°	105.5°
N	CA	C	110.1°	110.3°
N	CA	HA	112.0°	110.3°
CD	N	H	123.7°	124.4°
N	CD	CG	102.5°	110.1°
N	CD	OE1	124.9°	124.9°
CB	CA	C	110.6°	110.3°
CB	CA	HA	111.5°	110.3°
CA	CB	CG	103.2°	101.7°
CA	CB	HB2	111.6°	110.9°
CA	CB	HB3	113.0°	111.0°
C	CA	HA	107.1°	110.2°
CA	C	O	120.5°	120.0°
CA	C	OXT	123.7°	120.0°
CG	CB	HB2	111.7°	111.0°
CG	CB	HB3	113.0°	111.0°
CB	CG	CD	116.2°	104.2°
CB	CG	HG2	107.3°	110.5°
CB	CG	HG3	105.7°	110.5°
HB2	CB	HB3	104.7°	110.9°
CD	CG	HG2	107.3°	110.5°
CD	CG	HG3	105.8°	110.5°
CG	CD	OE1	132.7°	124.9°
HG2	CG	HG3	114.9°	110.5°
O	C	OXT	99.8°	120.0°
C	OXT	HXT	90.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	N	CD	H	180.0°	179.9°
N	CA	CB	C	119.0°	119.0°
N	CA	CB	HA	121.9°	119.1°
N	CA	C	HA	122.0°	122.0°
N	CA	CB	CG	0.8°	25.4°
N	CA	CB	HB2	120.8°	92.7°
N	CA	CB	HB3	121.6°	143.6°
CA	N	CD	CG	0.0°	0.5°
CA	N	CD	OE1	179.7°	179.6°
N	CA	C	O	177.6°	16.1°
N	CA	C	OXT	48.7°	164.0°
CD	N	CA	CB	0.5°	17.0°
CD	N	CA	C	118.9°	102.0°
CD	N	CA	HA	122.0°	136.1°
N	CD	CG	CB	0.5°	16.2°
N	CD	CG	OE1	179.6°	179.9°
N	CD	CG	HG2	119.4°	134.9°
N	CD	CG	HG3	117.5°	102.5°
H	N	CA	CB	179.5°	163.0°
H	N	CA	C	61.1°	77.9°
H	N	CA	HA	58.0°	43.9°
H	N	CD	CG	180.0°	179.6°
H	N	CD	OE1	0.3°	0.3°
CB	CA	C	HA	121.7°	121.9°
CA	CB	CG	HB2	120.0°	118.1°
CA	CB	CG	HB3	122.3°	118.1°
CA	CB	HB2	HB3	122.5°	123.8°
CA	CB	CG	CD	0.8°	24.8°
CA	CB	CG	HG2	119.1°	143.5°
CA	CB	CG	HG3	117.8°	93.9°
CB	CA	C	O	66.1°	100.0°
CB	CA	C	OXT	165.0°	79.9°
C	CA	CB	CG	118.3°	93.6°
C	CA	CB	HB2	1.7°	148.3°
C	CA	CB	HB3	119.4°	24.5°
CA	C	O	OXT	138.9°	179.9°
CA	C	OXT	HXT	90.0°	180.0°
HA	CA	CB	CG	122.6°	144.5°
HA	CA	CB	HB2	117.3°	26.4°
HA	CA	CB	HB3	0.3°	97.4°
HA	CA	C	O	55.6°	138.1°
HA	CA	C	OXT	73.3°	42.0°
CG	CB	HB2	HB3	122.6°	123.9°
CB	CG	CD	HG2	120.0°	118.7°
CB	CG	CD	HG3	116.9°	118.7°
CB	CG	HG2	HG3	117.2°	122.6°
CB	CG	CD	OE1	179.8°	163.7°
HB2	CB	CG	CD	120.9°	93.3°
HB2	CB	CG	HG2	0.9°	25.4°
HB2	CB	CG	HG3	122.2°	148.0°
HB3	CB	CG	CD	121.5°	142.9°
HB3	CB	CG	HG2	118.6°	98.4°
HB3	CB	CG	HG3	4.5°	24.2°
CD	CG	HG2	HG3	117.3°	122.6°
HG2	CG	CD	OE1	60.2°	45.0°
HG3	CG	CD	OE1	62.9°	77.6°
O	C	OXT	HXT	90.0°	0.1°

223166

PDB entries from 2024-07-31

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