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PBU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
P1O1sing1.61Å1.67Å
P1OP1sing1.61Å1.50Å
P1OP2doub1.48Å1.53Å
P1OP3sing1.61Å1.51Å
P4O4sing1.61Å1.67Å
P4O41doub1.48Å1.53Å
P4O42sing1.61Å1.51Å
P4O43sing1.61Å1.52Å
P5O5sing1.61Å1.65Å
P5O51doub1.48Å1.52Å
P5O52sing1.61Å1.52Å
P5O53sing1.61Å1.51Å
C3'C2'sing1.53Å1.55Å
C3'OP1sing1.43Å1.41Å
C3'H3'1sing1.09Å1.10Å
C3'H3'2sing1.09Å1.10Å
C2'O2'sing1.45Å1.42Å
C2'C1'sing1.53Å1.55Å
C2'H2'sing1.09Å1.10Å
O2'C7sing1.34Å1.42Å
C1'O1'sing1.45Å1.41Å
C1'H1'1sing1.09Å1.10Å
C1'H1'2sing1.09Å1.10Å
O1'C11sing1.34Å1.41Å
C1O1sing1.43Å1.53Å
C1C2sing1.53Å1.57Å
C1C6sing1.53Å1.54Å
C1H1sing1.09Å1.10Å
C2O2sing1.43Å1.42Å
C2C3sing1.53Å1.55Å
C2H2sing1.09Å1.10Å
O2H02sing0.97Å0.95Å
C3O3sing1.43Å1.43Å
C3C4sing1.53Å1.58Å
C3H3sing1.09Å1.10Å
O3H03sing0.97Å0.95Å
C4O4sing1.43Å1.52Å
C4C5sing1.53Å1.58Å
C4H4sing1.09Å1.10Å
C5O5sing1.43Å1.47Å
C5C6sing1.53Å1.55Å
C5H5sing1.09Å1.10Å
C6O6sing1.43Å1.44Å
C6H6sing1.09Å1.10Å
O6H06sing0.97Å0.95Å
C7O7doub1.21Å1.21Å
C7C8sing1.51Å1.54Å
C8C9sing1.53Å1.54Å
C8H81sing1.09Å1.10Å
C8H82sing1.09Å1.10Å
C9C10sing1.53Å1.54Å
C9H91sing1.09Å1.10Å
C9H92sing1.09Å1.10Å
C10H11sing1.09Å1.10Å
C10H12sing1.09Å1.10Å
C10H13sing1.09Å1.10Å
C11O11doub1.21Å1.22Å
C11C12sing1.51Å1.55Å
C12C13sing1.53Å1.54Å
C12H121sing1.09Å1.10Å
C12H122sing1.09Å1.10Å
C13C14sing1.53Å1.54Å
C13H131sing1.09Å1.10Å
C13H132sing1.09Å1.10Å
C14H141sing1.09Å1.10Å
C14H142sing1.09Å1.10Å
C14H143sing1.09Å1.10Å
O42H42sing0.97Å0.95Å
O43H43sing0.97Å0.95Å
O52H52sing0.97Å0.95Å
O53H53sing0.97Å0.95Å
OP3HP3sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1P1OP1107.1°109.4°
O1P1OP2102.9°109.4°
O1P1OP3104.1°109.5°
P1O1C1132.4°123.0°
OP1P1OP2113.8°109.5°
OP1P1OP3110.4°109.5°
P1OP1C3'119.0°123.0°
OP2P1OP3117.3°109.5°
P1OP3HP3109.5°114.0°
O4P4O4198.7°109.5°
O4P4O42105.5°109.5°
O4P4O43109.9°109.4°
P4O4C4131.1°123.0°
O41P4O42114.5°109.5°
O41P4O43115.6°109.5°
O42P4O43111.3°109.5°
P4O42H42109.5°114.0°
P4O43H43109.5°114.0°
O5P5O51100.3°109.5°
O5P5O52103.4°109.5°
O5P5O53103.2°109.5°
P5O5C5133.5°123.0°
O51P5O52117.5°109.4°
O51P5O53114.3°109.5°
O52P5O53115.0°109.4°
P5O52H52109.5°114.0°
P5O53H53109.5°114.0°
C2'C3'OP1111.6°109.5°
C2'C3'H3'1109.0°109.4°
C2'C3'H3'2108.9°109.5°
C3'C2'O2'108.6°109.5°
C3'C2'C1'112.0°109.5°
C3'C2'H2'108.5°109.5°
OP1C3'H3'1108.9°109.5°
OP1C3'H3'2109.0°109.5°
H3'1C3'H3'2109.5°109.5°
O2'C2'C1'109.0°109.4°
O2'C2'H2'110.3°109.5°
C2'O2'C7117.5°117.0°
C1'C2'H2'108.5°109.4°
C2'C1'O1'109.2°109.5°
C2'C1'H1'1109.5°109.5°
C2'C1'H1'2109.5°109.5°
O2'C7O7120.5°120.0°
O2'C7C8119.7°120.0°
O1'C1'H1'1109.5°109.5°
O1'C1'H1'2109.5°109.5°
C1'O1'C11122.0°117.0°
H1'1C1'H1'2109.5°109.4°
O1'C11O11124.5°120.0°
O1'C11C12115.4°120.0°
O1C1C2115.4°109.5°
O1C1C6106.6°109.4°
O1C1H1107.4°109.5°
C2C1C6112.8°109.5°
C2C1H1107.0°109.5°
C1C2O2113.1°109.5°
C1C2C3110.6°109.4°
C1C2H2107.3°109.5°
C6C1H1107.3°109.4°
C1C6C5110.3°109.5°
C1C6O6107.0°109.5°
C1C6H6108.6°109.5°
O2C2C3109.0°109.5°
O2C2H2109.1°109.5°
C2O2H02109.5°114.0°
C3C2H2107.6°109.5°
C2C3O3107.8°109.4°
C2C3C4111.3°109.5°
C2C3H3108.2°109.5°
O3C3C4112.0°109.5°
O3C3H3109.6°109.5°
C3O3H03109.5°114.0°
C4C3H3107.8°109.5°
C3C4O4109.5°109.5°
C3C4C5108.7°109.5°
C3C4H4109.0°109.5°
O4C4C5110.8°109.5°
O4C4H4109.8°109.5°
C5C4H4109.0°109.5°
C4C5O5108.6°109.5°
C4C5C6112.6°109.5°
C4C5H5108.2°109.5°
O5C5C6109.0°109.5°
O5C5H5109.7°109.5°
C6C5H5108.6°109.4°
C5C6O6112.4°109.5°
C5C6H6108.5°109.4°
O6C6H6110.0°109.5°
C6O6H06109.5°114.0°
O7C7C8119.8°120.0°
C7C8C9110.2°109.5°
C7C8H81109.3°109.5°
C7C8H82109.3°109.5°
C9C8H81109.3°109.4°
C9C8H82109.3°109.5°
C8C9C10109.5°109.5°
C8C9H91109.5°109.4°
C8C9H92109.5°109.4°
H81C8H82109.5°109.5°
C10C9H91109.5°109.5°
C10C9H92109.5°109.5°
C9C10H11109.5°109.5°
C9C10H12109.5°109.5°
C9C10H13109.4°109.5°
H91C9H92109.5°109.5°
H11C10H12109.4°109.4°
H11C10H13109.5°109.4°
H12C10H13109.5°109.5°
O11C11C12120.0°120.0°
C11C12C13113.5°109.5°
C11C12H121108.4°109.4°
C11C12H122108.5°109.5°
C13C12H121108.5°109.5°
C13C12H122108.5°109.5°
C12C13C14111.1°109.5°
C12C13H131109.0°109.5°
C12C13H132109.1°109.5°
H121C12H122109.5°109.5°
C14C13H131109.1°109.4°
C14C13H132109.0°109.5°
C13C14H141109.5°109.5°
C13C14H142109.5°109.5°
C13C14H143109.5°109.4°
H131C13H132109.5°109.5°
H141C14H142109.5°109.5°
H141C14H143109.5°109.5°
H142C14H143109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1P1OP1OP2113.0°119.9°
O1P1OP1OP3112.7°120.0°
O1P1OP2OP3113.5°120.0°
O1P1OP1C3'42.7°175.0°
P1O1C1C270.6°120.0°
P1O1C1C6163.3°120.0°
P1O1C1H148.6°0.1°
O1P1OP3HP3112.9°60.0°
OP1P1OP2OP3131.0°120.0°
P1OP1C3'C2'76.2°180.0°
P1OP1C3'H3'144.1°60.0°
P1OP1C3'H3'2163.5°60.0°
OP1P1O1C1145.6°175.0°
OP1P1OP3HP3132.5°60.0°
OP2P1OP1C3'70.3°55.0°
OP2P1O1C125.4°55.1°
OP2P1OP3HP30.0°180.0°
OP3P1OP1C3'155.5°65.0°
OP3P1O1C197.4°64.9°
O4P4O41O42111.6°120.0°
O4P4O41O43117.1°119.9°
O4P4O42O43119.2°120.0°
P4O4C4C3132.0°120.0°
P4O4C4C5108.1°120.0°
P4O4C4H412.4°0.0°
O4P4O42H42107.5°60.0°
O4P4O43H43110.6°180.0°
O41P4O42O43133.4°120.0°
O41P4O4C4134.0°55.0°
O41P4O42H420.0°180.0°
O41P4O43H430.0°60.1°
O42P4O4C4107.4°65.0°
O42P4O43H43132.9°60.0°
O43P4O4C412.6°175.0°
O43P4O42H42133.4°60.0°
O5P5O51O52111.1°120.0°
O5P5O51O53109.7°120.1°
O5P5O52O53111.7°120.1°
P5O5C5C474.3°120.0°
P5O5C5C648.7°120.0°
P5O5C5H5167.5°0.0°
O5P5O52H52109.3°60.0°
O5P5O53H53107.9°180.0°
O51P5O52O53139.0°119.9°
O51P5O5C5134.9°55.0°
O51P5O52H520.0°179.9°
O51P5O53H530.0°60.0°
O52P5O5C5103.3°65.0°
O52P5O53H53140.3°59.9°
O53P5O5C516.8°175.0°
O53P5O52H52139.0°60.1°
C2'C3'OP1H3'1120.3°120.0°
C2'C3'OP1H3'2120.3°120.0°
C2'C3'H3'1H3'2119.0°120.0°
C3'C2'O2'C1'122.3°120.0°
C3'C2'O2'H2'118.7°120.1°
C3'C2'C1'H2'119.7°120.0°
C3'C2'O2'C785.8°150.0°
C3'C2'C1'O1'31.4°175.0°
C3'C2'C1'H1'1151.3°55.0°
C3'C2'C1'H1'288.6°65.0°
OP1C3'H3'1H3'2119.1°120.0°
OP1C3'C2'O2'175.6°65.0°
OP1C3'C2'C1'55.2°175.0°
OP1C3'C2'H2'64.5°55.0°
H3'1C3'C2'O2'64.1°55.0°
H3'1C3'C2'C1'175.5°65.0°
H3'1C3'C2'H2'55.8°175.0°
H3'2C3'C2'O2'55.3°175.0°
H3'2C3'C2'C1'65.1°55.0°
H3'2C3'C2'H2'175.1°64.9°
O2'C2'C1'H2'120.1°119.9°
O2'C2'C1'O1'88.8°65.0°
O2'C2'C1'H1'131.2°175.0°
O2'C2'C1'H1'2151.3°55.1°
C2'O2'C7O7111.2°0.0°
C2'O2'C7C868.0°179.9°
C1'C2'O2'C7151.9°90.0°
C2'C1'O1'H1'1119.9°120.1°
C2'C1'O1'H1'2119.9°120.0°
C2'C1'H1'1H1'2120.1°120.0°
C2'C1'O1'C11139.4°180.0°
H2'C2'O2'C732.9°29.9°
H2'C2'C1'O1'151.1°55.0°
H2'C2'C1'H1'189.0°65.1°
H2'C2'C1'H1'231.1°175.0°
O2'C7O7C8179.2°179.9°
O2'C7C8C9140.3°180.0°
O2'C7C8H8199.6°60.0°
O2'C7C8H8220.2°60.0°
O1'C1'H1'1H1'2120.1°119.9°
C1'O1'C11O111.1°0.0°
C1'O1'C11C12178.6°180.0°
H1'1C1'O1'C11100.6°59.9°
H1'2C1'O1'C1119.5°60.0°
O1'C11O11C12177.5°180.0°
O1'C11C12C1384.8°180.0°
O1'C11C12H12135.8°60.0°
O1'C11C12H122154.6°60.0°
O1C1C2C6122.9°120.0°
O1C1C2H1119.4°120.0°
O1C1C6H1114.8°119.9°
O1C1C2O255.7°60.0°
O1C1C2C3178.3°180.0°
O1C1C2H264.6°60.0°
O1C1C6C5178.0°180.0°
O1C1C6O655.5°60.0°
O1C1C6H663.2°60.0°
C2C1C6H1117.6°120.0°
C1C2O2C3123.5°120.0°
C1C2O2H2119.3°120.0°
C1C2C3H2116.9°120.0°
C1C2O2H02180.0°180.0°
C1C2C3O3179.8°180.0°
C1C2C3C456.6°60.0°
C1C2C3H361.7°60.0°
C2C1C6C554.3°60.0°
C2C1C6O6176.8°180.0°
C2C1C6H664.4°60.0°
C6C1C2O267.1°60.0°
C6C1C2C355.5°60.0°
C6C1C2H2172.6°180.0°
C1C6C5C455.5°60.0°
C1C6C5O5176.2°180.0°
C1C6C5O6119.3°120.0°
C1C6C5H6118.8°120.0°
C1C6C5H564.3°60.1°
C1C6O6H6117.8°120.0°
C1C6O6H06180.0°60.0°
H1C1C2O2175.1°180.0°
H1C1C2C362.3°60.0°
H1C1C2H254.8°60.0°
H1C1C6C563.2°60.1°
H1C1C6O659.3°60.0°
H1C1C6H6178.0°180.0°
O2C2C3H2118.2°120.0°
O2C2C3O354.8°60.0°
O2C2C3C468.4°60.0°
O2C2C3H3173.3°180.0°
C3C2O2H0256.5°60.0°
C2C3O3C4122.8°120.0°
C2C3O3H3117.6°120.0°
C2C3C4H3118.5°120.0°
C2C3O3H03180.0°60.0°
C2C3C4O4178.0°180.0°
C2C3C4C556.8°60.0°
C2C3C4H461.9°60.0°
H2C2O2H0260.7°60.0°
H2C2C3O363.3°60.0°
H2C2C3C4173.5°180.0°
H2C2C3H355.2°60.0°
O3C3C4H3120.7°120.0°
O3C3C4O461.3°60.0°
O3C3C4C5177.5°180.0°
O3C3C4H458.9°60.0°
C4C3O3H0357.3°180.0°
C3C4O4C5119.9°120.0°
C3C4O4H4119.7°120.0°
C3C4C5H4118.7°120.0°
C3C4C5O5177.4°180.0°
C3C4C5C656.6°60.0°
C3C4C5H563.5°60.0°
H3C3O3H0362.4°60.0°
H3C3C4O459.5°60.0°
H3C3C4C561.7°60.0°
H3C3C4H4179.6°180.0°
O4C4C5H4120.9°120.0°
O4C4C5O562.2°60.0°
O4C4C5C6176.9°180.0°
O4C4C5H556.9°60.0°
C4C5O5C6123.1°120.0°
C4C5O5H5118.1°120.0°
C4C5C6H5119.8°120.0°
C4C5C6O6174.9°180.0°
C4C5C6H663.3°60.0°
H4C4C5O558.7°60.0°
H4C4C5C662.2°60.0°
H4C4C5H5177.8°180.0°
O5C5C6H5119.5°120.0°
O5C5C6O664.5°60.0°
O5C5C6H657.4°60.0°
C5C6O6H6121.0°120.0°
C5C6O6H0658.8°180.0°
H5C5C6O655.0°60.0°
H5C5C6H6176.9°180.0°
H6C6O6H0662.2°60.0°
O7C7C8C940.5°0.1°
O7C7C8H8179.6°120.0°
O7C7C8H82160.7°120.0°
C7C8C9H81120.1°120.0°
C7C8C9H82120.1°120.1°
C7C8H81H82119.7°120.0°
C7C8C9C10175.1°180.0°
C7C8C9H9164.9°60.0°
C7C8C9H9255.1°59.9°
C9C8H81H82119.7°120.0°
C8C9C10H91120.0°120.0°
C8C9C10H92120.0°120.0°
C8C9H91H92120.0°119.9°
C8C9C10H11180.0°60.0°
C8C9C10H1260.0°60.0°
C8C9C10H1360.0°180.0°
H81C8C9C1055.0°60.0°
H81C8C9H91175.0°180.0°
H81C8C9H9265.0°60.0°
H82C8C9C1064.7°60.0°
H82C8C9H9155.2°60.0°
H82C8C9H92175.2°180.0°
C10C9H91H92120.0°120.1°
C9C10H11H12120.0°120.0°
C9C10H11H13120.0°120.0°
C9C10H12H13120.0°120.0°
H91C9C10H1160.0°180.0°
H91C9C10H12180.0°60.0°
H91C9C10H1360.0°60.0°
H92C9C10H1160.0°60.0°
H92C9C10H1260.0°179.9°
H92C9C10H13180.0°60.0°
H11C10H12H13120.0°119.9°
O11C11C12C1397.5°0.0°
O11C11C12H121141.9°120.0°
O11C11C12H12223.1°120.0°
C11C12C13H121120.6°120.0°
C11C12C13H122120.6°120.0°
C11C12H121H122118.2°120.0°
C11C12C13C14137.8°180.0°
C11C12C13H13117.6°60.0°
C11C12C13H132102.0°60.0°
C13C12H121H122118.2°120.0°
C12C13C14H131120.2°120.0°
C12C13C14H132120.2°120.0°
C12C13H131H132119.3°120.0°
C12C13C14H141180.0°60.0°
C12C13C14H14260.0°180.0°
C12C13C14H14360.0°60.0°
H121C12C13C14101.6°60.1°
H121C12C13H131138.1°180.0°
H121C12C13H13218.6°60.0°
H122C12C13C1417.2°59.9°
H122C12C13H131103.0°60.0°
H122C12C13H132137.5°180.0°
C14C13H131H132119.2°120.0°
C13C14H141H142120.0°120.0°
C13C14H141H143120.0°120.0°
C13C14H142H143120.0°120.0°
H131C13C14H14159.8°60.0°
H131C13C14H142179.8°60.0°
H131C13C14H14360.3°180.0°
H132C13C14H14159.8°180.0°
H132C13C14H14260.2°60.0°
H132C13C14H143179.8°60.0°
H141C14H142H143120.0°120.0°

223790

PDB entries from 2024-08-14

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