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SummaryGeometryRelated PDB entries

PB6

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C7C8sing1.53Å1.55Å
C7N12sing1.46Å1.51Å
C7H7sing1.09Å1.10Å
C7H7Asing1.09Å1.10Å
C8P9sing1.82Å1.82Å
C8P14sing1.82Å1.83Å
C8H8sing1.09Å1.10Å
P9O10sing1.61Å1.50Å
P9O11doub1.48Å1.47Å
P9O12sing1.61Å1.52Å
N12C13doub1.32Å1.37ÅAromatic
N12C17sing1.32Å1.34ÅAromatic
C13C14sing1.38Å1.41ÅAromatic
C13H13sing1.08Å1.08Å
C14C15doub1.38Å1.43ÅAromatic
C14H14sing1.08Å1.08Å
P14O15sing1.61Å1.51Å
P14O16sing1.61Å1.53Å
P14O17doub1.48Å1.50Å
C15C16sing1.40Å1.42ÅAromatic
C15H15sing1.08Å1.08Å
C16C17doub1.40Å1.39ÅAromatic
C16C18sing1.48Å1.51Å
C17H17sing1.08Å1.08Å
C18C19doub1.33Å1.33Å
C18H18sing1.08Å1.08Å
C19C20sing1.51Å1.53Å
C19H19sing1.08Å1.08Å
C20C21sing1.53Å1.51Å
C20H20sing1.09Å1.10Å
C20H20Asing1.09Å1.10Å
C21H21sing1.09Å1.10Å
C21H21Asing1.09Å1.10Å
C21H21Bsing1.09Å1.10Å
O10H151sing0.97Å0.95Å
O12H16sing0.97Å0.95Å
O15H171sing0.97Å0.95Å
O16H181sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C8C7N12113.9°109.5°
C8C7H7108.0°109.4°
C8C7H7A108.0°109.4°
C7C8P9105.0°109.4°
C7C8P14112.3°109.5°
C7C8H8111.5°109.4°
N12C7H7108.0°109.5°
N12C7H7A108.0°109.5°
C7N12C13125.7°119.0°
C7N12C17113.9°119.1°
H7C7H7A110.9°109.4°
P9C8P14111.9°109.5°
P9C8H8111.9°109.5°
C8P9O10107.5°109.5°
C8P9O11105.2°109.4°
C8P9O12106.5°109.4°
P14C8H8104.4°109.5°
C8P14O15105.0°109.5°
C8P14O16105.7°109.5°
C8P14O17109.7°109.5°
O10P9O11115.3°109.5°
O10P9O12109.5°109.5°
P9O10H151109.5°114.0°
O11P9O12112.4°109.5°
P9O12H16109.5°114.0°
C13N12C17120.3°121.9°
N12C13C14118.8°121.0°
N12C13H13120.6°119.5°
N12C17C16124.8°120.6°
N12C17H17117.6°119.7°
C14C13H13120.6°119.5°
C13C14C15120.5°119.3°
C13C14H14119.7°120.3°
C15C14H14119.8°120.4°
C14C15C16118.7°118.3°
C14C15H15120.6°120.9°
O15P14O16121.0°109.4°
O15P14O17105.2°109.5°
P14O15H171109.5°114.0°
O16P14O17109.8°109.5°
P14O16H181109.5°114.0°
C16C15H15120.6°120.8°
C15C16C17116.8°118.9°
C15C16C18128.1°120.6°
C17C16C18114.9°120.5°
C16C17H17117.6°119.7°
C16C18C19121.2°120.0°
C16C18H18119.4°120.0°
C19C18H18119.4°120.1°
C18C19C20126.4°119.9°
C18C19H19116.8°120.1°
C20C19H19116.8°120.0°
C19C20C21113.5°109.5°
C19C20H20108.1°109.5°
C19C20H20A108.1°109.5°
C21C20H20108.2°109.4°
C21C20H20A108.1°109.4°
C20C21H21109.5°109.5°
C20C21H21A109.5°109.4°
C20C21H21B109.4°109.4°
H20C20H20A110.8°109.5°
H21C21H21A109.4°109.5°
H21C21H21B109.5°109.5°
H21AC21H21B109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C8C7N12H7120.0°120.0°
C8C7N12H7A120.0°120.0°
C8C7H7H7A118.2°119.9°
C7C8P9P14122.1°120.0°
C7C8P9H8121.0°119.9°
C7C8P14H8120.9°119.9°
C7C8P9O1059.8°60.0°
C7C8P9O1163.5°60.0°
C7C8P9O12177.0°180.0°
C8C7N12C1330.3°82.1°
C8C7N12C17146.7°98.1°
C7C8P14O1548.6°60.4°
C7C8P14O16177.6°179.7°
C7C8P14O1764.1°59.6°
N12C7H7H7A118.2°120.0°
N12C7C8P9173.9°66.1°
N12C7C8P1464.2°173.9°
N12C7C8H852.5°53.9°
C7N12C13C17176.8°179.8°
C7N12C13C14178.0°180.0°
C7N12C13H132.0°0.1°
C7N12C17C16179.8°179.7°
C7N12C17H170.3°0.0°
H7C7C8P966.1°173.9°
H7C7C8P1455.8°53.9°
H7C7C8H8172.6°66.1°
H7C7N12C13150.3°37.9°
H7C7N12C1726.7°141.9°
H7AC7C8P953.9°54.0°
H7AC7C8P14175.8°66.1°
H7AC7C8H867.4°173.9°
H7AC7N12C1389.6°157.9°
H7AC7N12C1793.4°21.9°
P9C8P14H8121.2°120.1°
C8P9O10O11116.9°120.0°
C8P9O10O12115.3°120.0°
C8P9O11O12115.4°119.9°
P9C8P14O1569.3°179.6°
P9C8P14O1659.7°59.7°
P9C8P14O17178.1°60.3°
C8P9O10H151116.9°60.0°
C8P9O12H16114.7°180.0°
P14C8P9O10178.1°180.0°
P14C8P9O1158.6°60.0°
P14C8P9O1260.8°60.0°
C8P14O15O16119.2°120.0°
C8P14O15O17115.8°120.1°
C8P14O16O17118.3°120.1°
C8P14O15H171115.8°66.2°
C8P14O16H181118.3°60.0°
H8C8P9O1061.3°59.9°
H8C8P9O11175.4°180.0°
H8C8P9O1256.0°60.1°
H8C8P14O15169.5°59.6°
H8C8P14O1661.5°60.4°
H8C8P14O1756.8°179.6°
O10P9O11O12126.4°120.1°
O10P9O12H16129.4°60.0°
O11P9O10H1510.0°180.0°
O11P9O12H160.0°60.1°
O12P9O10H151127.8°59.9°
N12C13C14H13180.0°179.9°
N12C13C14C150.2°0.0°
N12C13C14H14179.9°180.0°
C13N12C17C163.0°0.5°
C13N12C17H17176.9°179.8°
C17N12C13C141.2°0.2°
C17N12C13H13178.8°179.7°
N12C17C16C153.2°0.5°
N12C17C16H17180.0°179.7°
N12C17C16C18179.6°179.7°
C13C14C15H14180.0°180.0°
C13C14C15C160.1°0.0°
C13C14C15H15179.9°179.9°
H13C13C14C15179.8°180.0°
H13C13C14H140.2°0.1°
C14C15C16H15180.0°180.0°
C14C15C16C171.7°0.3°
C14C15C16C18177.5°180.0°
H14C14C15C16179.8°180.0°
H14C14C15H150.2°0.0°
O15P14O16O17122.9°120.0°
O15P14O16H181122.9°180.0°
O16P14O15H171125.0°173.8°
O17P14O15H1710.0°53.9°
O17P14O16H1810.0°60.0°
C15C16C17C18176.3°179.8°
C15C16C17H17176.7°179.8°
C15C16C18C192.0°0.0°
C15C16C18H18178.0°180.0°
H15C15C16C17178.3°179.8°
H15C15C16C182.5°0.0°
C17C16C18C19177.8°179.7°
C17C16C18H182.2°0.2°
C18C16C17H170.4°0.0°
C16C18C19H18180.0°180.0°
C16C18C19C20179.6°180.0°
C16C18C19H190.4°0.0°
C18C19C20H19180.0°180.0°
C18C19C20C212.6°125.0°
C18C19C20H20117.4°115.0°
C18C19C20H20A122.6°5.0°
H18C18C19C200.4°0.0°
H18C18C19H19179.6°180.0°
C19C20C21H20120.0°120.0°
C19C20C21H20A120.0°120.1°
C19C20H20H20A118.3°120.1°
C19C20C21H21180.0°180.0°
C19C20C21H21A60.0°60.0°
C19C20C21H21B60.0°59.9°
H19C19C20C21177.4°55.0°
H19C19C20H2062.6°64.9°
H19C19C20H20A57.4°175.0°
C21C20H20H20A118.4°120.0°
C20C21H21H21A120.0°120.0°
C20C21H21H21B120.0°120.0°
C20C21H21AH21B120.0°120.0°
H20C20C21H2160.0°60.0°
H20C20C21H21A180.0°180.0°
H20C20C21H21B60.0°60.0°
H20AC20C21H2160.0°60.0°
H20AC20C21H21A60.0°60.0°
H20AC20C21H21B180.0°180.0°
H21C21H21AH21B120.0°120.1°

224931

PDB entries from 2024-09-11

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