PAZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O8	P1	sing	1.61Å	1.52Å
O8	HO8	sing	0.97Å	0.95Å
O6	P1	doub	1.48Å	1.55Å
P1	O7	sing	1.61Å	1.53Å
P1	O2	sing	1.61Å	1.64Å
O7	HO7	sing	0.97Å	0.95Å
O2	C2	sing	1.43Å	1.45Å
C2	C1	sing	1.53Å	1.55Å
C2	H2	sing	1.09Å	1.10Å
C2	H2A	sing	1.09Å	1.10Å
C4	C1	sing	1.53Å	1.53Å
C1	C5	sing	1.53Å	1.53Å
C1	C3	sing	1.53Å	1.53Å
C4	H4	sing	1.09Å	1.10Å
C4	H4A	sing	1.09Å	1.10Å
C4	H4B	sing	1.09Å	1.10Å
C3	H3	sing	1.09Å	1.10Å
C3	H3A	sing	1.09Å	1.10Å
C3	H3B	sing	1.09Å	1.10Å
C5	C6	sing	1.51Å	1.51Å
C5	O5'	sing	1.43Å	1.43Å
C5	H5	sing	1.09Å	1.10Å
O5'	HO5'	sing	0.97Å	0.95Å
O6'	C6	doub	1.21Å	1.33Å
C6	N	sing	1.35Å	1.28Å
N	C8	sing	1.46Å	1.46Å
N	HN	sing	0.97Å	1.00Å
C8	C9	sing	1.53Å	1.54Å
C8	H8	sing	1.09Å	1.10Å
C8	H8A	sing	1.09Å	1.10Å
C9	C	sing	1.51Å	1.51Å
C9	H9	sing	1.09Å	1.10Å
C9	H9A	sing	1.09Å	1.10Å
O	C	doub	1.21Å	1.25Å
C	OXT	sing	1.34Å	1.26Å
OXT	HOXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P1	O8	HO8	109.5°	114.1°
O8	P1	O6	106.6°	109.5°
O8	P1	O7	115.4°	109.5°
O8	P1	O2	100.2°	109.5°
O6	P1	O7	116.8°	109.5°
O6	P1	O2	112.6°	109.4°
O7	P1	O2	104.2°	109.4°
P1	O7	HO7	109.5°	114.0°
P1	O2	C2	129.3°	123.0°
O2	C2	C1	107.0°	109.5°
O2	C2	H2	110.3°	109.5°
O2	C2	H2A	110.8°	109.5°
C1	C2	H2	110.3°	109.4°
C1	C2	H2A	110.8°	109.5°
C2	C1	C4	106.8°	109.5°
C2	C1	C5	108.1°	109.5°
C2	C1	C3	113.2°	109.5°
H2	C2	H2A	107.6°	109.5°
C4	C1	C5	111.9°	109.5°
C4	C1	C3	108.3°	109.5°
C1	C4	H4	109.5°	109.4°
C1	C4	H4A	109.5°	109.5°
C1	C4	H4B	109.5°	109.5°
C5	C1	C3	108.6°	109.5°
C1	C5	C6	115.5°	109.5°
C1	C5	O5'	110.6°	109.5°
C1	C5	H5	103.9°	109.4°
C1	C3	H3	109.5°	109.5°
C1	C3	H3A	109.5°	109.4°
C1	C3	H3B	109.5°	109.5°
H4	C4	H4A	109.5°	109.5°
H4	C4	H4B	109.4°	109.4°
H4A	C4	H4B	109.5°	109.5°
H3	C3	H3A	109.4°	109.5°
H3	C3	H3B	109.5°	109.4°
H3A	C3	H3B	109.5°	109.5°
C6	C5	O5'	107.7°	109.5°
C6	C5	H5	106.9°	109.5°
C5	C6	O6'	119.1°	120.0°
C5	C6	N	120.0°	120.0°
O5'	C5	H5	112.2°	109.5°
C5	O5'	HO5'	109.5°	114.0°
O6'	C6	N	120.8°	120.0°
C6	N	C8	126.1°	120.0°
C6	N	HN	117.0°	120.0°
C8	N	HN	116.9°	120.0°
N	C8	C9	108.1°	109.5°
N	C8	H8	109.9°	109.4°
N	C8	H8A	110.2°	109.5°
C9	C8	H8	109.9°	109.5°
C9	C8	H8A	110.2°	109.4°
C8	C9	C	114.7°	109.5°
C8	C9	H9	107.8°	109.5°
C8	C9	H9A	106.6°	109.4°
H8	C8	H8A	108.4°	109.5°
C	C9	H9	107.8°	109.5°
C	C9	H9A	106.6°	109.5°
C9	C	O	121.4°	120.1°
C9	C	OXT	115.9°	120.0°
H9	C9	H9A	113.6°	109.5°
O	C	OXT	122.6°	120.0°
C	OXT	HOXT	109.5°	117.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O8	P1	O6	O7	130.7°	120.0°
O8	P1	O6	O2	108.9°	120.0°
O8	P1	O7	O2	108.7°	120.0°
O8	P1	O7	HO7	84.6°	60.0°
O8	P1	O2	C2	99.1°	65.0°
HO8	O8	P1	O6	37.3°	179.9°
HO8	O8	P1	O7	94.2°	60.1°
HO8	O8	P1	O2	154.7°	59.9°
O6	P1	O7	O2	124.8°	120.0°
O6	P1	O7	HO7	149.0°	60.0°
O6	P1	O2	C2	148.0°	55.1°
O7	P1	O2	C2	20.5°	175.0°
O2	P1	O7	HO7	24.1°	180.0°
P1	O2	C2	C1	157.7°	180.0°
P1	O2	C2	H2	82.3°	60.0°
P1	O2	C2	H2A	36.8°	60.0°
O2	C2	C1	H2	120.0°	120.0°
O2	C2	C1	H2A	120.9°	120.0°
O2	C2	H2	H2A	121.0°	120.1°
O2	C2	C1	C4	50.1°	60.0°
O2	C2	C1	C5	70.5°	180.0°
O2	C2	C1	C3	169.2°	60.0°
C1	C2	H2	H2A	121.0°	120.0°
C2	C1	C4	C5	118.1°	120.0°
C2	C1	C4	C3	122.3°	120.0°
C2	C1	C5	C3	123.2°	120.0°
C2	C1	C4	H4	5.4°	66.4°
C2	C1	C4	H4A	125.4°	173.6°
C2	C1	C4	H4B	114.6°	53.6°
C2	C1	C3	H3	99.5°	64.6°
C2	C1	C3	H3A	20.4°	175.4°
C2	C1	C3	H3B	140.4°	55.4°
C2	C1	C5	C6	171.0°	54.4°
C2	C1	C5	O5'	66.4°	65.6°
C2	C1	C5	H5	54.2°	174.4°
H2	C2	C1	C4	170.1°	180.0°
H2	C2	C1	C5	49.5°	60.0°
H2	C2	C1	C3	70.8°	60.0°
H2A	C2	C1	C4	70.9°	60.0°
H2A	C2	C1	C5	168.6°	60.0°
H2A	C2	C1	C3	48.2°	180.0°
C4	C1	C5	C3	119.4°	120.0°
C1	C4	H4	H4A	120.0°	120.0°
C1	C4	H4	H4B	120.0°	120.0°
C1	C4	H4A	H4B	120.0°	120.0°
C4	C1	C3	H3	142.2°	175.4°
C4	C1	C3	H3A	97.9°	55.4°
C4	C1	C3	H3B	22.2°	64.6°
C4	C1	C5	C6	53.6°	65.6°
C4	C1	C5	O5'	176.2°	174.4°
C4	C1	C5	H5	63.2°	54.4°
C5	C1	C4	H4	112.7°	173.7°
C5	C1	C4	H4A	7.2°	53.7°
C5	C1	C4	H4B	127.3°	66.4°
C5	C1	C3	H3	20.5°	55.4°
C5	C1	C3	H3A	140.4°	64.6°
C5	C1	C3	H3B	99.5°	175.4°
C1	C5	C6	O5'	124.1°	120.0°
C1	C5	C6	H5	115.1°	120.0°
C1	C5	O5'	H5	115.5°	120.0°
C1	C5	O5'	HO5'	113.3°	60.0°
C1	C5	C6	O6'	78.3°	111.5°
C1	C5	C6	N	101.5°	68.5°
C3	C1	C4	H4	127.6°	53.7°
C3	C1	C4	H4A	112.4°	66.3°
C3	C1	C4	H4B	7.6°	173.6°
C1	C3	H3	H3A	120.0°	120.0°
C1	C3	H3	H3B	120.0°	120.0°
C1	C3	H3A	H3B	120.0°	120.0°
C3	C1	C5	C6	65.9°	174.4°
C3	C1	C5	O5'	56.8°	54.4°
C3	C1	C5	H5	177.4°	65.6°
H4	C4	H4A	H4B	120.0°	120.0°
H3	C3	H3A	H3B	120.0°	120.0°
C6	C5	O5'	H5	117.5°	120.0°
C6	C5	O5'	HO5'	13.7°	60.0°
C5	C6	O6'	N	179.8°	180.0°
C5	C6	N	C8	177.2°	175.5°
C5	C6	N	HN	2.7°	4.4°
O5'	C5	C6	O6'	157.5°	8.5°
O5'	C5	C6	N	22.6°	171.5°
H5	C5	O5'	HO5'	131.2°	180.0°
H5	C5	C6	O6'	36.7°	128.6°
H5	C5	C6	N	143.4°	51.4°
O6'	C6	N	C8	2.9°	4.5°
O6'	C6	N	HN	177.1°	175.6°
C6	N	C8	HN	180.0°	179.9°
C6	N	C8	C9	132.1°	180.0°
C6	N	C8	H8	12.1°	60.0°
C6	N	C8	H8A	107.3°	60.0°
N	C8	C9	H8	120.0°	120.0°
N	C8	C9	H8A	120.6°	120.0°
N	C8	H8	H8A	120.6°	120.0°
N	C8	C9	C	66.8°	180.0°
N	C8	C9	H9	53.2°	60.0°
N	C8	C9	H9A	175.5°	60.0°
HN	N	C8	C9	47.9°	0.0°
HN	N	C8	H8	167.9°	120.1°
HN	N	C8	H8A	72.7°	119.9°
C9	C8	H8	H8A	120.6°	120.0°
C8	C9	C	H9	120.0°	120.0°
C8	C9	C	H9A	117.6°	119.9°
C8	C9	H9	H9A	117.8°	120.0°
C8	C9	C	O	26.8°	0.0°
C8	C9	C	OXT	155.2°	180.0°
H8	C8	C9	C	173.2°	60.0°
H8	C8	C9	H9	66.8°	180.0°
H8	C8	C9	H9A	55.5°	60.0°
H8A	C8	C9	C	53.7°	60.0°
H8A	C8	C9	H9	173.8°	60.0°
H8A	C8	C9	H9A	63.9°	180.0°
C	C9	H9	H9A	117.9°	120.0°
C9	C	O	OXT	177.9°	180.0°
C9	C	OXT	HOXT	178.0°	180.0°
H9	C9	C	O	93.2°	120.0°
H9	C9	C	OXT	84.8°	60.0°
H9A	C9	C	O	144.4°	120.0°
H9A	C9	C	OXT	37.5°	60.0°
O	C	OXT	HOXT	0.0°	0.1°

Definition date:	2007-12-05
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	3BF3