Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PAX

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PAO1Asing1.51Å1.53Å
PAO2Adoub1.51Å1.53Å
PAO5'sing1.64Å1.60Å
PAO3Asing1.63Å1.58Å
O5'C5'sing1.42Å1.42Å
PBO1Bsing1.51Å1.48Å
PBO2Bdoub1.51Å1.48Å
PBO3Asing1.63Å1.58Å
PBO3sing1.64Å1.60Å
PGO1Gsing1.62Å1.53Å
PGO2Gsing1.62Å1.52Å
PGO3Gdoub1.50Å1.54Å
PGO3'sing1.61Å1.64Å
O1GH1Gsing0.98Å0.95Å
N9AC4Asing1.37Å1.38ÅAromatic
N9AC8Asing1.37Å1.38ÅAromatic
N9AC1'sing1.46Å1.49Å
C4AN3Adoub1.34Å1.37ÅAromatic
C4AC5Asing1.39Å1.41ÅAromatic
N3AC2Asing1.35Å1.37ÅAromatic
C2AN1Adoub1.35Å1.37ÅAromatic
C2AH2Asing1.08Å1.10Å
N1AC6Asing1.35Å1.38ÅAromatic
C6AN6Asing1.41Å1.33Å
C6AC5Adoub1.39Å1.44ÅAromatic
N6AH6A1sing1.00Å1.02Å
N6AH6A2sing1.00Å1.02Å
C5AN7Asing1.37Å1.38ÅAromatic
N7AC8Adoub1.32Å1.31ÅAromatic
C8AH8Asing1.08Å1.10Å
C5'C4'sing1.52Å1.51Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.12Å
C4'O4'sing1.44Å1.47Å
C4'C3'sing1.52Å1.55Å
C4'H4'sing1.10Å1.11Å
O4'C1'sing1.44Å1.42Å
C1'C2'sing1.53Å1.54Å
C1'H1'sing1.09Å1.11Å
C2'O2'sing1.43Å1.43Å
C2'C3'sing1.52Å1.53Å
C2'H2'sing1.09Å1.11Å
O2'H2sing0.97Å0.95Å
C3'O3'sing1.41Å1.44Å
C3'H3'sing1.10Å1.11Å
O5C5sing1.42Å1.44Å
O5PDsing1.62Å1.64Å
C5C4sing1.52Å1.52Å
C5H51sing1.09Å1.11Å
C5H52sing1.09Å1.11Å
C4O4sing1.44Å1.44Å
C4C3sing1.52Å1.52Å
C4H4sing1.10Å1.11Å
O4C1sing1.44Å1.41Å
C1C2sing1.52Å1.51Å
C1N1Tsing1.44Å1.48Å
C1H1sing1.09Å1.12Å
C2C3sing1.51Å1.52Å
C2H21sing1.09Å1.12Å
C2H22sing1.10Å1.11Å
C3O3sing1.41Å1.41Å
C3H3sing1.10Å1.12Å
PDO1Dsing1.62Å1.54Å
PDO2Dsing1.62Å1.55Å
PDO3Ddoub1.50Å1.54Å
O2DH2Dsing0.98Å0.95Å
N1TC6Tsing1.39Å1.42ÅAromatic
N1TC2Tsing1.41Å1.41ÅAromatic
C6TC5Tdoub1.34Å1.35ÅAromatic
C6TH6Tsing1.09Å1.10Å
C2TO2Tdoub1.23Å1.21Å
C2TN3Tsing1.40Å1.39ÅAromatic
N3TC4Tsing1.39Å1.40ÅAromatic
N3TH3Tsing1.02Å1.02Å
C4TO4Tdoub1.23Å1.23Å
C4TC5Tsing1.49Å1.46ÅAromatic
C5TCM5sing1.50Å1.50Å
CM5HM51sing1.09Å1.12Å
CM5HM52sing1.09Å1.11Å
CM5HM53sing1.09Å1.11Å
HO1O2Gsing0.98Å0.95Å
HO2O1Dsing0.98Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1APAO2A116.6°120.7°
O1APAO5'110.4°108.2°
O1APAO3A109.1°108.3°
O2APAO5'108.3°109.5°
O2APAO3A108.6°108.8°
O5'PAO3A103.0°99.2°
PAO5'C5'121.1°119.2°
PAO3APB133.9°129.9°
O5'C5'C4'110.9°109.0°
O5'C5'H5'1111.7°108.8°
O5'C5'H5'2111.7°108.8°
O1BPBO2B119.8°120.8°
O1BPBO3A108.1°108.3°
O1BPBO3111.5°108.4°
O2BPBO3A107.9°108.7°
O2BPBO3104.0°109.4°
O3APBO3104.5°99.1°
PBO3C3121.0°119.3°
O1GPGO2G113.7°103.3°
O1GPGO3G110.8°115.3°
O1GPGO3'106.1°103.8°
PGO1GH1G113.8°118.9°
O2GPGO3G111.5°115.0°
O2GPGO3'104.7°102.5°
PGO2GHO1109.5°118.9°
O3GPGO3'109.6°115.2°
PGO3'C3'124.3°118.1°
C4AN9AC8A105.2°107.0°
C4AN9AC1'131.4°126.9°
N9AC4AN3A127.9°127.5°
N9AC4AC5A105.4°105.2°
C8AN9AC1'123.4°126.1°
N9AC8AN7A114.7°112.2°
N9AC8AH8A124.9°122.2°
N9AC1'O4'111.4°109.4°
N9AC1'C2'120.4°113.6°
N9AC1'H1'98.1°105.2°
N3AC4AC5A126.6°127.2°
C4AN3AC2A111.9°110.5°
C4AC5AC6A116.5°116.8°
C4AC5AN7A110.9°110.7°
N3AC2AN1A127.8°128.8°
N3AC2AH2A115.9°115.6°
N1AC2AH2A116.3°115.6°
C2AN1AC6A118.5°117.5°
N1AC6AN6A118.2°120.2°
N1AC6AC5A118.6°119.1°
N6AC6AC5A123.2°120.7°
C6AN6AH6A1118.2°119.5°
C6AN6AH6A2109.1°119.4°
C6AC5AN7A132.6°132.4°
H6A1N6AH6A2109.0°120.8°
C5AN7AC8A103.8°104.9°
N7AC8AH8A120.4°125.6°
C4'C5'H5'1111.7°110.5°
C4'C5'H5'2111.7°110.6°
C5'C4'O4'111.1°109.8°
C5'C4'C3'114.7°113.5°
C5'C4'H4'103.5°108.7°
H5'1C5'H5'298.7°109.1°
O4'C4'C3'105.7°105.2°
O4'C4'H4'112.8°108.3°
C4'O4'C1'107.8°108.4°
C3'C4'H4'109.2°111.2°
C4'C3'C2'102.3°102.3°
C4'C3'O3'107.3°112.1°
C4'C3'H3'115.5°110.2°
O4'C1'C2'101.5°107.6°
O4'C1'H1'118.0°108.3°
C2'C1'H1'108.5°112.6°
C1'C2'O2'113.5°109.2°
C1'C2'C3'101.1°102.8°
C1'C2'H2'114.4°114.0°
O2'C2'C3'115.0°111.2°
O2'C2'H2'100.4°106.9°
C2'O2'H2113.5°107.3°
C3'C2'H2'113.1°112.6°
C2'C3'O3'110.2°113.5°
C2'C3'H3'112.9°109.6°
O3'C3'H3'108.3°109.0°
C5O5PD122.0°118.5°
O5C5C4110.3°108.8°
O5C5H51111.9°109.0°
O5C5H52111.9°109.0°
O5PDO1D104.7°102.8°
O5PDO2D106.0°103.7°
O5PDO3D106.1°115.0°
C4C5H51111.9°110.4°
C4C5H52111.9°110.3°
C5C4O4109.8°109.6°
C5C4C3114.6°113.4°
C5C4H4104.6°108.6°
H51C5H5298.6°109.3°
O4C4C3105.8°106.1°
O4C4H4113.5°107.8°
C4O4C1110.5°108.7°
C3C4H4108.7°111.1°
C4C3C2104.4°101.4°
C4C3O3107.8°112.3°
C4C3H3114.0°111.7°
O4C1C2106.4°106.9°
O4C1N1T107.7°108.3°
O4C1H1114.3°109.6°
C2C1N1T114.0°112.2°
C2C1H1108.0°112.3°
C1C2C3101.6°102.2°
C1C2H21115.2°114.3°
C1C2H22115.2°110.3°
N1TC1H1106.7°107.4°
C1N1TC6T121.8°118.5°
C1N1TC2T117.1°121.2°
C3C2H21115.2°113.1°
C3C2H22115.2°109.7°
C2C3O3110.0°111.4°
C2C3H3111.8°110.6°
H21C2H2295.2°107.2°
O3C3H3108.7°109.2°
O1DPDO2D113.2°103.3°
O1DPDO3D112.9°115.0°
PDO1DHO2109.5°118.9°
O2DPDO3D113.0°115.3°
PDO2DH2D106.1°119.0°
C6TN1TC2T121.1°120.3°
N1TC6TC5T123.0°124.5°
N1TC6TH6T121.2°114.8°
N1TC2TO2T123.7°123.8°
N1TC2TN3T114.2°115.1°
C5TC6TH6T115.8°120.7°
C6TC5TC4T118.7°118.4°
C6TC5TCM5120.3°123.6°
O2TC2TN3T122.1°121.1°
C2TN3TC4T127.3°126.9°
C2TN3TH3T115.8°116.4°
C4TN3TH3T116.9°116.6°
N3TC4TO4T118.3°123.6°
N3TC4TC5T115.7°114.8°
O4TC4TC5T126.0°121.6°
C4TC5TCM5121.0°118.0°
C5TCM5HM51120.3°109.8°
C5TCM5HM52108.3°109.7°
C5TCM5HM53108.3°109.7°
HM51CM5HM52108.4°109.3°
HM51CM5HM53108.3°109.4°
HM52CM5HM53101.7°108.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1APAO2AO5'125.2°126.5°
O1APAO2AO3A123.7°126.0°
O1APAO5'O3A116.4°112.9°
O1APAO5'C5'2.2°180.0°
O1APAO3APB67.0°67.3°
O2APAO5'O3A114.9°113.8°
O2APAO5'C5'126.6°46.6°
O2APAO3APB165.0°65.6°
O5'PAO3APB50.3°179.9°
PAO5'C5'C4'105.0°150.0°
PAO5'C5'H5'120.3°29.4°
PAO5'C5'H5'2129.8°89.4°
O3APAO5'C5'118.5°67.1°
PAO3APBO1B75.9°67.1°
PAO3APBO2B55.1°65.8°
PAO3APBO3165.3°180.0°
O5'C5'C4'H5'1125.3°119.5°
O5'C5'C4'H5'2125.3°119.5°
O5'C5'H5'1H5'2117.6°118.5°
O5'C5'C4'O4'35.0°62.1°
O5'C5'C4'C3'84.8°179.5°
O5'C5'C4'H4'156.4°56.2°
O1BPBO2BO3A124.1°126.0°
O1BPBO2BO3125.4°126.7°
O1BPBO3AO3118.9°112.9°
O1BPBO3C386.1°60.0°
O2BPBO3AO3110.2°114.2°
O2BPBO3C3143.4°73.5°
O3APBO3C330.4°172.9°
PBO3C3C4147.3°173.0°
PBO3C3C299.4°60.0°
PBO3C3H323.3°62.5°
O1GPGO2GO3G126.2°126.5°
O1GPGO2GO3'115.3°107.7°
O1GPGO3GO3'116.7°121.0°
O1GPGO3'C3'112.5°173.0°
O1GPGO2GHO121.8°78.5°
O2GPGO3GO3'115.5°119.0°
O2GPGO1GH1G180.0°77.5°
O2GPGO3'C3'126.9°65.7°
O3GPGO1GH1G53.4°48.8°
O3GPGO3'C3'7.2°60.0°
O3GPGO2GHO1104.4°48.0°
O3'PGO1GH1G65.4°175.8°
PGO3'C3'C4'114.7°175.2°
PGO3'C3'C2'134.6°60.0°
PGO3'C3'H3'10.7°62.4°
O3'PGO2GHO1137.2°173.8°
C4AN9AC8AC1'180.0°179.9°
N9AC4AN3AC5A180.0°179.9°
N9AC4AN3AC2A180.0°179.9°
N9AC4AC5AC6A179.9°180.0°
N9AC4AC5AN7A0.1°0.0°
C4AN9AC8AN7A0.1°0.0°
C4AN9AC8AH8A180.0°180.0°
C4AN9AC1'O4'74.5°146.1°
C4AN9AC1'C2'44.1°93.7°
C4AN9AC1'H1'161.1°29.9°
C8AN9AC4AN3A179.9°179.9°
C8AN9AC4AC5A0.1°0.0°
N9AC8AN7AC5A0.0°0.0°
N9AC8AN7AH8A180.0°180.0°
C8AN9AC1'O4'105.6°33.8°
C8AN9AC1'C2'135.9°86.4°
C8AN9AC1'H1'18.8°150.0°
C1'N9AC4AN3A0.1°0.1°
C1'N9AC4AC5A179.9°180.0°
C1'N9AC8AN7A180.0°179.9°
C1'N9AC8AH8A0.0°0.0°
N9AC1'O4'C4'170.1°129.0°
N9AC1'O4'C2'129.3°123.9°
N9AC1'O4'H1'112.3°114.2°
N9AC1'C2'H1'111.6°119.5°
N9AC1'C2'O2'66.7°138.6°
N9AC1'C2'C3'169.7°103.2°
N9AC1'C2'H2'47.9°19.0°
C4AN3AC2AN1A0.1°0.0°
C4AN3AC2AH2A179.9°179.9°
N3AC4AC5AC6A0.1°0.1°
N3AC4AC5AN7A179.9°179.9°
C5AC4AN3AC2A0.0°0.0°
C4AC5AC6AN1A0.1°0.1°
C4AC5AC6AN6A180.0°180.0°
C4AC5AC6AN7A180.0°180.0°
C4AC5AN7AC8A0.1°0.0°
N3AC2AN1AH2A180.0°179.9°
N3AC2AN1AC6A0.1°0.0°
C2AN1AC6AN6A180.0°180.0°
C2AN1AC6AC5A0.1°0.1°
H2AC2AN1AC6A179.9°179.9°
N1AC6AN6AC5A179.9°180.0°
N1AC6AN6AH6A1180.0°126.3°
N1AC6AN6AH6A254.7°59.9°
N1AC6AC5AN7A179.8°179.9°
C6AN6AH6A1H6A2125.3°173.7°
N6AC6AC5AN7A0.1°0.0°
C5AC6AN6AH6A10.1°53.6°
C5AC6AN6AH6A2125.2°120.1°
C6AC5AN7AC8A179.9°180.0°
C5AN7AC8AH8A180.0°180.0°
C4'C5'H5'1H5'2117.6°121.8°
C5'C4'O4'C3'125.0°122.5°
C5'C4'O4'H4'115.8°118.5°
C5'C4'C3'H4'115.6°122.9°
C5'C4'O4'C1'144.1°148.9°
C5'C4'C3'C2'111.9°157.1°
C5'C4'C3'O3'132.1°81.0°
C5'C4'C3'H3'11.2°40.7°
H5'1C5'C4'O4'160.3°57.4°
H5'1C5'C4'C3'40.5°60.0°
H5'1C5'C4'H4'78.3°175.7°
H5'2C5'C4'O4'90.2°178.3°
H5'2C5'C4'C3'150.0°60.9°
H5'2C5'C4'H4'31.1°63.4°
O4'C4'C3'H4'121.7°117.0°
C4'O4'C1'C2'40.8°5.1°
C4'O4'C1'H1'77.6°116.8°
O4'C4'C3'C2'10.8°37.1°
O4'C4'C3'O3'105.2°159.0°
O4'C4'C3'H3'133.9°79.4°
C3'C4'O4'C1'19.1°26.4°
C4'C3'C2'C1'33.8°32.8°
C4'C3'C2'O2'156.5°84.0°
C4'C3'C2'O3'113.9°121.0°
C4'C3'C2'H3'124.8°116.9°
C4'C3'C2'H2'89.0°156.0°
C4'C3'O3'H3'125.4°122.3°
H4'C4'O4'C1'100.2°92.6°
H4'C4'C3'C2'132.5°79.9°
H4'C4'C3'O3'16.5°42.0°
H4'C4'C3'H3'104.4°163.6°
O4'C1'C2'H1'125.0°119.2°
O4'C1'C2'O2'169.9°100.1°
O4'C1'C2'C3'46.3°18.1°
O4'C1'C2'H2'75.5°140.3°
C1'C2'O2'C3'115.7°112.8°
C1'C2'O2'H2'122.6°123.8°
C1'C2'C3'H2'122.8°123.2°
C1'C2'O2'H2180.0°151.1°
C1'C2'C3'O3'80.1°153.8°
C1'C2'C3'H3'158.6°84.1°
H1'C1'C2'O2'44.9°19.1°
H1'C1'C2'C3'78.7°137.3°
H1'C1'C2'H2'159.4°100.4°
O2'C2'C3'H2'114.5°120.0°
O2'C2'C3'O3'42.6°37.0°
O2'C2'C3'H3'78.7°159.1°
C3'C2'O2'H264.3°38.3°
C2'C3'O3'H3'124.0°122.4°
H2'C2'O2'H257.4°85.1°
H2'C2'C3'O3'157.1°83.1°
H2'C2'C3'H3'35.9°39.0°
O5C5C4H51125.2°119.6°
O5C5C4H52125.2°119.5°
O5C5H51H52117.8°119.0°
O5C5C4O446.5°178.8°
O5C5C4C372.4°60.4°
O5C5C4H4168.7°63.7°
C5O5PDO1D75.2°54.3°
C5O5PDO2D164.9°53.1°
C5O5PDO3D44.5°180.0°
PDO5C5C4151.3°180.0°
PDO5C5H5126.0°59.6°
PDO5C5H5283.5°59.6°
O5PDO1DO2D115.0°107.7°
O5PDO1DO3D115.0°125.8°
O5PDO2DO3D115.8°126.7°
O5PDO2DH2D180.0°175.5°
O5PDO1DHO2172.9°173.8°
C4C5H51H52117.8°121.5°
C5C4O4C3124.2°122.8°
C5C4O4H4116.7°118.1°
C5C4C3H4116.6°122.7°
C5C4O4C1125.4°139.6°
C5C4C3C2101.7°154.4°
C5C4C3O3141.4°86.6°
C5C4C3H320.6°36.6°
H51C5C4O4171.7°61.7°
H51C5C4C352.8°180.0°
H51C5C4H466.1°55.9°
H52C5C4O478.7°59.2°
H52C5C4C3162.4°59.1°
H52C5C4H443.5°176.8°
O4C4C3H4122.3°117.0°
C4O4C1C221.7°7.5°
C4O4C1N1T144.3°113.6°
C4O4C1H197.3°129.6°
O4C4C3C219.5°34.1°
O4C4C3O397.5°153.1°
O4C4C3H3141.8°83.7°
C3C4O4C11.2°16.8°
C4C3C2C131.1°37.2°
C4C3C2O3115.4°119.7°
C4C3C2H3123.7°118.6°
C4C3C2H21156.4°160.5°
C4C3C2H2294.2°79.8°
C4C3O3H3124.0°124.5°
H4C4O4C1117.9°102.3°
H4C4C3C2141.7°82.9°
H4C4C3O324.8°36.2°
H4C4C3H396.0°159.3°
O4C1C2N1T118.5°118.6°
O4C1C2H1123.1°120.3°
O4C1N1TH1123.1°118.3°
O4C1C2C332.7°28.7°
O4C1C2H21157.9°151.2°
O4C1C2H2292.6°88.0°
O4C1N1TC6T47.0°1.7°
O4C1N1TC2T132.8°178.4°
C2C1N1TH1119.1°123.9°
C1C2C3H21125.3°123.3°
C1C2C3H22125.3°117.0°
C1C2H21H22121.0°122.6°
C1C2C3O384.3°157.0°
C1C2C3H3154.8°81.4°
C2C1N1TC6T70.8°116.1°
C2C1N1TC2T109.4°63.8°
N1TC1C2C3151.2°90.0°
N1TC1C2H2183.6°32.5°
N1TC1C2H2225.8°153.4°
C1N1TC6TC2T179.8°179.9°
C1N1TC6TC5T179.8°180.0°
C1N1TC6TH6T0.2°0.0°
C1N1TC2TO2T0.5°0.1°
C1N1TC2TN3T179.5°180.0°
H1C1C2C390.4°149.0°
H1C1C2H2134.8°88.6°
H1C1C2H22144.2°32.3°
H1C1N1TC6T170.1°120.0°
H1C1N1TC2T9.7°60.1°
C3C2H21H22121.1°121.1°
C2C3O3H3122.8°122.5°
H21C2C3O341.0°79.8°
H21C2C3H379.9°41.9°
H22C2C3O3150.4°39.9°
H22C2C3H329.5°161.6°
O1DPDO2DO3D129.9°126.3°
O1DPDO2DH2D65.8°77.5°
O2DPDO1DHO272.1°78.4°
O3DPDO2DH2D64.1°48.8°
O3DPDO1DHO257.9°48.1°
N1TC6TC5TH6T180.0°180.0°
C6TN1TC2TO2T179.7°179.9°
C6TN1TC2TN3T0.4°0.0°
N1TC6TC5TC4T0.4°0.0°
N1TC6TC5TCM5179.8°180.0°
C2TN1TC6TC5T0.0°0.1°
C2TN1TC6TH6T179.9°180.0°
N1TC2TO2TN3T180.0°179.9°
N1TC2TN3TC4T0.3°0.0°
N1TC2TN3TH3T179.8°180.0°
C6TC5TC4TN3T0.4°0.0°
C6TC5TC4TO4T179.6°179.9°
C6TC5TC4TCM5179.8°179.9°
C6TC5TCM5HM51179.9°119.6°
C6TC5TCM5HM5254.7°0.6°
C6TC5TCM5HM5354.8°120.2°
H6TC6TC5TC4T179.6°180.0°
H6TC6TC5TCM50.2°0.1°
O2TC2TN3TC4T179.7°179.9°
O2TC2TN3TH3T0.2°0.1°
C2TN3TC4TH3T179.9°180.0°
C2TN3TC4TO4T179.9°179.9°
C2TN3TC4TC5T0.1°0.0°
N3TC4TO4TC5T180.0°179.9°
N3TC4TC5TCM5179.8°180.0°
H3TN3TC4TO4T0.1°0.1°
H3TN3TC4TC5T179.8°180.0°
O4TC4TC5TCM50.2°0.1°
C4TC5TCM5HM510.3°60.3°
C4TC5TCM5HM52125.0°179.5°
C4TC5TCM5HM53125.4°59.9°
C5TCM5HM51HM52125.3°120.4°
C5TCM5HM51HM53125.1°120.4°
C5TCM5HM52HM53114.0°120.1°
HM51CM5HM52HM53114.0°119.5°

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon