PAP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
PB	O1B	doub	1.48Å	1.48Å
PB	O2B	sing	1.61Å	1.51Å
PB	O3B	sing	1.61Å	1.49Å
PB	O3A	sing	1.61Å	1.69Å
O2B	HOB2	sing	0.97Å	0.95Å
O3B	HOB3	sing	0.97Å	0.95Å
PA	O1A	doub	1.48Å	1.50Å
PA	O2A	sing	1.61Å	1.51Å
PA	O3A	sing	1.61Å	1.72Å
PA	O5'	sing	1.61Å	1.66Å
O2A	HOA2	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.44Å
C5'	C4'	sing	1.53Å	1.46Å
C5'	H5'1	sing	1.09Å	1.12Å
C5'	H5'2	sing	1.09Å	1.12Å
C4'	O4'	sing	1.44Å	1.43Å
C4'	C3'	sing	1.54Å	1.41Å
C4'	H4'	sing	1.09Å	1.11Å
O4'	C1'	sing	1.44Å	1.41Å
C3'	O3'	sing	1.43Å	1.50Å
C3'	C2'	sing	1.55Å	1.57Å
C3'	H3'	sing	1.09Å	1.11Å
O3'	P	sing	1.61Å	1.73Å
P	O1	doub	1.48Å	1.52Å
P	O2	sing	1.61Å	1.52Å
P	O3	sing	1.61Å	1.51Å
O2	HO2	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å
C2'	O2'	sing	1.43Å	1.45Å
C2'	C1'	sing	1.54Å	1.60Å
C2'	H2'	sing	1.09Å	1.12Å
O2'	HO2'	sing	0.97Å	0.95Å
C1'	N9	sing	1.47Å	1.54Å
C1'	H1'	sing	1.09Å	1.11Å
N9	C8	sing	1.36Å	1.46Å	Aromatic
N9	C4	sing	1.37Å	1.39Å	Aromatic
C8	N7	doub	1.30Å	1.35Å	Aromatic
C8	H8	sing	1.08Å	1.10Å
N7	C5	sing	1.36Å	1.45Å	Aromatic
C5	C6	sing	1.41Å	1.41Å	Aromatic
C5	C4	doub	1.40Å	1.42Å	Aromatic
C6	N6	sing	1.38Å	1.27Å
C6	N1	doub	1.33Å	1.36Å	Aromatic
N6	HN61	sing	0.97Å	1.02Å
N6	HN62	sing	0.97Å	1.02Å
N1	C2	sing	1.32Å	1.32Å	Aromatic
C2	N3	doub	1.32Å	1.35Å	Aromatic
C2	H2	sing	1.08Å	1.10Å
N3	C4	sing	1.33Å	1.38Å	Aromatic

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1B	PB	O2B	113.5°	109.5°
O1B	PB	O3B	115.1°	109.5°
O1B	PB	O3A	114.7°	109.4°
O2B	PB	O3B	114.6°	109.5°
O2B	PB	O3A	112.4°	109.5°
PB	O2B	HOB2	113.5°	106.8°
O3B	PB	O3A	83.0°	109.5°
PB	O3B	HOB3	115.2°	106.8°
PB	O3A	PA	137.8°	106.8°
O1A	PA	O2A	115.1°	109.5°
O1A	PA	O3A	113.1°	109.5°
O1A	PA	O5'	116.4°	109.5°
O2A	PA	O3A	112.2°	109.4°
O2A	PA	O5'	109.4°	109.4°
PA	O2A	HOA2	115.0°	106.8°
O3A	PA	O5'	87.6°	109.5°
PA	O5'	C5'	114.6°	106.8°
O5'	C5'	C4'	109.5°	109.5°
O5'	C5'	H5'1	112.3°	109.4°
O5'	C5'	H5'2	112.2°	109.5°
C4'	C5'	H5'1	112.2°	109.5°
C4'	C5'	H5'2	112.2°	109.5°
C5'	C4'	O4'	116.3°	110.4°
C5'	C4'	C3'	105.6°	110.5°
C5'	C4'	H4'	107.1°	110.3°
H5'1	C5'	H5'2	98.2°	109.5°
O4'	C4'	C3'	107.8°	104.8°
O4'	C4'	H4'	104.7°	110.4°
C4'	O4'	C1'	104.8°	105.3°
C3'	C4'	H4'	115.7°	110.3°
C4'	C3'	O3'	99.8°	110.6°
C4'	C3'	C2'	93.4°	104.1°
C4'	C3'	H3'	128.7°	110.5°
O4'	C1'	C2'	91.7°	104.9°
O4'	C1'	N9	98.9°	110.3°
O4'	C1'	H1'	135.7°	110.3°
O3'	C3'	C2'	120.8°	110.5°
O3'	C3'	H3'	105.0°	110.5°
C3'	O3'	P	135.8°	106.8°
C2'	C3'	H3'	110.3°	110.5°
C3'	C2'	O2'	96.6°	110.5°
C3'	C2'	C1'	89.7°	104.0°
C3'	C2'	H2'	134.0°	110.5°
O3'	P	O1	104.0°	109.4°
O3'	P	O2	107.3°	109.5°
O3'	P	O3	97.2°	109.5°
O1	P	O2	115.0°	109.5°
O1	P	O3	115.7°	109.5°
O2	P	O3	114.9°	109.4°
P	O2	HO2	107.3°	106.8°
P	O3	HO3	97.2°	106.8°
O2'	C2'	C1'	124.7°	110.8°
O2'	C2'	H2'	104.3°	110.4°
C2'	O2'	HO2'	96.6°	106.9°
C1'	C2'	H2'	110.0°	110.5°
C2'	C1'	N9	131.7°	110.4°
C2'	C1'	H1'	105.5°	110.5°
N9	C1'	H1'	99.0°	110.3°
C1'	N9	C8	127.3°	126.3°
C1'	N9	C4	130.1°	126.3°
C8	N9	C4	102.6°	107.4°
N9	C8	N7	118.1°	110.0°
N9	C8	H8	124.9°	125.0°
N9	C4	C5	106.8°	106.0°
N9	C4	N3	126.5°	134.9°
N7	C8	H8	117.0°	125.0°
C8	N7	C5	98.8°	109.4°
N7	C5	C6	131.7°	134.7°
N7	C5	C4	113.8°	107.1°
C6	C5	C4	114.5°	118.2°
C5	C6	N6	118.1°	120.8°
C5	C6	N1	120.9°	118.5°
C5	C4	N3	126.7°	119.1°
N6	C6	N1	120.8°	120.8°
C6	N6	HN61	118.1°	119.9°
C6	N6	HN62	109.1°	120.0°
C6	N1	C2	117.0°	121.2°
HN61	N6	HN62	109.1°	120.0°
N1	C2	N3	131.7°	122.5°
N1	C2	H2	112.7°	118.7°
N3	C2	H2	115.6°	118.8°
C2	N3	C4	109.2°	120.6°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1B	PB	O2B	O3B	135.2°	120.0°
O1B	PB	O2B	O3A	132.2°	119.9°
O1B	PB	O3B	O3A	114.0°	120.0°
O1B	PB	O2B	HOB2	179.9°	60.0°
O1B	PB	O3B	HOB3	180.0°	180.0°
O1B	PB	O3A	PA	62.0°	60.0°
O2B	PB	O3B	O3A	111.5°	120.0°
O2B	PB	O3B	HOB3	45.5°	60.0°
O2B	PB	O3A	PA	69.6°	180.0°
O3B	PB	O2B	HOB2	44.7°	60.0°
O3B	PB	O3A	PA	176.6°	60.0°
O3A	PB	O2B	HOB2	47.8°	180.0°
O3A	PB	O3B	HOB3	66.0°	60.0°
PB	O3A	PA	O1A	51.8°	60.0°
PB	O3A	PA	O2A	176.0°	60.0°
PB	O3A	PA	O5'	66.0°	180.0°
O1A	PA	O2A	O3A	131.2°	120.0°
O1A	PA	O2A	O5'	133.3°	120.0°
O1A	PA	O3A	O5'	117.8°	120.0°
O1A	PA	O2A	HOA2	180.0°	180.0°
O1A	PA	O5'	C5'	162.2°	60.0°
O2A	PA	O3A	O5'	110.0°	120.0°
O2A	PA	O5'	C5'	65.2°	60.0°
O3A	PA	O2A	HOA2	48.8°	60.0°
O3A	PA	O5'	C5'	47.5°	180.0°
O5'	PA	O2A	HOA2	46.7°	60.0°
PA	O5'	C5'	C4'	124.7°	180.0°
PA	O5'	C5'	H5'1	110.1°	60.0°
PA	O5'	C5'	H5'2	0.6°	60.0°
O5'	C5'	C4'	H5'1	125.3°	119.9°
O5'	C5'	C4'	H5'2	125.3°	120.0°
O5'	C5'	H5'1	H5'2	118.2°	120.0°
O5'	C5'	C4'	O4'	173.9°	61.5°
O5'	C5'	C4'	C3'	66.6°	177.0°
O5'	C5'	C4'	H4'	57.3°	60.8°
C4'	C5'	H5'1	H5'2	118.1°	120.0°
C5'	C4'	O4'	C3'	118.3°	119.0°
C5'	C4'	O4'	H4'	118.0°	122.3°
C5'	C4'	C3'	H4'	118.2°	122.2°
C5'	C4'	O4'	C1'	124.8°	159.4°
C5'	C4'	C3'	O3'	150.0°	98.3°
C5'	C4'	C3'	C2'	87.9°	143.0°
C5'	C4'	C3'	H3'	31.7°	24.3°
H5'1	C5'	C4'	O4'	48.6°	178.6°
H5'1	C5'	C4'	C3'	168.1°	63.1°
H5'1	C5'	C4'	H4'	68.0°	59.2°
H5'2	C5'	C4'	O4'	60.8°	58.5°
H5'2	C5'	C4'	C3'	58.7°	57.0°
H5'2	C5'	C4'	H4'	177.4°	179.2°
O4'	C4'	C3'	H4'	116.8°	118.8°
O4'	C4'	C3'	O3'	85.0°	142.7°
O4'	C4'	C3'	C2'	37.1°	24.0°
O4'	C4'	C3'	H3'	156.6°	94.7°
C4'	O4'	C1'	C2'	45.7°	40.4°
C4'	O4'	C1'	N9	178.5°	159.3°
C4'	O4'	C1'	H1'	68.7°	78.5°
C3'	C4'	O4'	C1'	6.5°	40.5°
C4'	C3'	O3'	C2'	100.0°	114.7°
C4'	C3'	O3'	H3'	134.7°	122.7°
C4'	C3'	C2'	H3'	133.7°	118.6°
C4'	C3'	O3'	P	133.8°	120.0°
C4'	C3'	C2'	O2'	173.7°	118.9°
C4'	C3'	C2'	C1'	61.4°	0.1°
C4'	C3'	C2'	H2'	56.5°	118.6°
H4'	C4'	O4'	C1'	117.2°	78.3°
H4'	C4'	C3'	O3'	31.8°	23.9°
H4'	C4'	C3'	C2'	153.9°	94.8°
H4'	C4'	C3'	H3'	86.5°	146.5°
O4'	C1'	C2'	C3'	65.7°	23.9°
O4'	C1'	C2'	O2'	163.6°	142.6°
O4'	C1'	C2'	N9	103.6°	118.9°
O4'	C1'	C2'	H1'	138.7°	118.9°
O4'	C1'	C2'	H2'	71.7°	94.7°
O4'	C1'	N9	H1'	139.3°	122.2°
O4'	C1'	N9	C8	96.0°	27.0°
O4'	C1'	N9	C4	79.8°	152.9°
O3'	C3'	C2'	H3'	122.8°	122.6°
C3'	O3'	P	O1	168.6°	60.0°
C3'	O3'	P	O2	46.3°	180.0°
C3'	O3'	P	O3	72.6°	60.0°
O3'	C3'	C2'	O2'	82.8°	0.1°
O3'	C3'	C2'	C1'	42.1°	118.8°
O3'	C3'	C2'	H2'	160.0°	122.6°
C2'	C3'	O3'	P	126.2°	125.3°
C3'	C2'	O2'	C1'	94.2°	114.7°
C3'	C2'	O2'	H2'	138.6°	122.6°
C3'	C2'	C1'	H2'	137.4°	118.6°
C3'	C2'	O2'	HO2'	179.9°	180.0°
C3'	C2'	C1'	N9	169.3°	142.7°
C3'	C2'	C1'	H1'	72.9°	95.0°
H3'	C3'	O3'	P	0.9°	2.7°
H3'	C3'	C2'	O2'	40.0°	122.5°
H3'	C3'	C2'	C1'	164.9°	118.6°
H3'	C3'	C2'	H2'	77.1°	0.0°
O3'	P	O1	O2	117.1°	120.0°
O3'	P	O1	O3	105.2°	120.0°
O3'	P	O2	O3	106.8°	120.0°
O3'	P	O2	HO2	180.0°	179.9°
O3'	P	O3	HO3	180.0°	60.0°
O1	P	O2	O3	138.1°	120.0°
O1	P	O2	HO2	64.8°	60.0°
O1	P	O3	HO3	70.7°	180.0°
O2	P	O3	HO3	67.1°	60.0°
O3	P	O2	HO2	73.2°	60.1°
O2'	C2'	C1'	H2'	124.7°	122.7°
O2'	C2'	C1'	N9	92.9°	98.5°
O2'	C2'	C1'	H1'	24.9°	23.7°
C1'	C2'	O2'	HO2'	85.9°	65.3°
C2'	C1'	N9	H1'	120.3°	122.3°
C2'	C1'	N9	C8	163.6°	88.5°
C2'	C1'	N9	C4	20.6°	91.6°
H2'	C2'	O2'	HO2'	41.3°	57.4°
H2'	C2'	C1'	N9	31.9°	24.1°
H2'	C2'	C1'	H1'	149.6°	146.4°
C1'	N9	C8	C4	176.7°	180.0°
C1'	N9	C8	N7	176.3°	180.0°
C1'	N9	C8	H8	3.7°	0.0°
C1'	N9	C4	C5	176.1°	179.8°
C1'	N9	C4	N3	2.6°	0.0°
H1'	C1'	N9	C8	43.2°	149.2°
H1'	C1'	N9	C4	140.9°	30.8°
N9	C8	N7	H8	180.0°	180.0°
N9	C8	N7	C5	0.1°	0.3°
C8	N9	C4	C5	0.5°	0.3°
C8	N9	C4	N3	179.2°	180.0°
C4	N9	C8	N7	0.4°	0.0°
C4	N9	C8	H8	179.6°	180.0°
N9	C4	C5	N7	0.4°	0.4°
N9	C4	C5	C6	178.1°	179.6°
N9	C4	C5	N3	178.8°	179.8°
N9	C4	N3	C2	177.4°	180.0°
C8	N7	C5	C6	178.1°	179.5°
C8	N7	C5	C4	0.2°	0.4°
H8	C8	N7	C5	179.9°	179.7°
N7	C5	C6	C4	178.3°	178.9°
N7	C5	C6	N6	7.3°	0.8°
N7	C5	C6	N1	177.6°	179.6°
N7	C5	C4	N3	179.2°	179.8°
C5	C6	N6	N1	175.1°	179.6°
C5	C6	N6	HN61	180.0°	179.7°
C5	C6	N6	HN62	54.8°	0.6°
C5	C6	N1	C2	1.3°	0.4°
C6	C5	C4	N3	0.6°	0.6°
C4	C5	C6	N6	174.4°	179.7°
C4	C5	C6	N1	0.7°	0.6°
C5	C4	N3	C2	1.1°	0.3°
C6	N6	HN61	HN62	125.2°	179.7°
N6	C6	N1	C2	173.6°	180.0°
N1	C6	N6	HN61	5.0°	0.1°
N1	C6	N6	HN62	130.1°	179.8°
C6	N1	C2	N3	0.8°	0.1°
C6	N1	C2	H2	179.2°	179.9°
N1	C2	N3	H2	180.0°	180.0°
N1	C2	N3	C4	0.4°	0.0°
H2	C2	N3	C4	179.6°	180.0°

Definition date:	1999-07-08
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1AFK