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Summary Geometry Related PDB entries

Obsolete: PAG

PAG was replaced with 2PG on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1	doub	1.21Å	1.27Å
C1	O2'	sing	1.34Å	1.28Å
C1	C2	sing	1.51Å	1.58Å
O2'	HO2	sing	0.97Å	0.95Å
C2	C3	sing	1.53Å	1.59Å
C2	O2	sing	1.43Å	1.45Å
C2	H2	sing	1.09Å	1.11Å
C3	O3	sing	1.43Å	1.47Å
C3	H31	sing	1.09Å	1.12Å
C3	H32	sing	1.09Å	1.11Å
O2	P	sing	1.61Å	1.68Å
O3	HO3	sing	0.97Å	0.95Å
P	O1P	doub	1.48Å	1.57Å
P	O2P	sing	1.61Å	1.49Å
P	O3P	sing	1.61Å	1.56Å
O2P	HOP2	sing	0.97Å	0.95Å
O3P	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	O2'	122.4°	120.0°
O1	C1	C2	118.1°	120.0°
O2'	C1	C2	118.1°	120.0°
C1	O2'	HO2	122.3°	120.0°
C1	C2	C3	110.6°	109.4°
C1	C2	O2	112.2°	109.5°
C1	C2	H2	107.5°	109.4°
C3	C2	O2	111.1°	109.5°
C3	C2	H2	108.5°	109.5°
C2	C3	O3	115.4°	109.4°
C2	C3	H31	110.0°	109.5°
C2	C3	H32	110.1°	109.5°
O2	C2	H2	106.8°	109.5°
C2	O2	P	119.3°	106.8°
O3	C3	H31	110.0°	109.5°
O3	C3	H32	110.0°	109.5°
C3	O3	HO3	115.4°	106.7°
H31	C3	H32	100.2°	109.4°
O2	P	O1P	108.9°	109.4°
O2	P	O2P	102.2°	109.5°
O2	P	O3P	109.7°	109.5°
O1P	P	O2P	111.0°	109.4°
O1P	P	O3P	110.8°	109.5°
O2P	P	O3P	114.0°	109.4°
P	O2P	HOP2	102.2°	106.8°
P	O3P	HOP3	109.6°	106.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	O2'	C2	166.2°	180.0°
O1	C1	O2'	HO2	180.0°	0.0°
O1	C1	C2	C3	162.0°	120.0°
O1	C1	C2	O2	37.4°	0.0°
O1	C1	C2	H2	79.7°	120.0°
O2'	C1	C2	C3	31.2°	60.0°
O2'	C1	C2	O2	155.8°	179.9°
O2'	C1	C2	H2	87.1°	60.0°
C2	C1	O2'	HO2	13.8°	180.0°
C1	C2	C3	O2	125.2°	120.0°
C1	C2	C3	H2	117.6°	120.0°
C1	C2	O2	H2	117.5°	120.0°
C1	C2	C3	O3	58.2°	180.0°
C1	C2	C3	H31	176.5°	60.0°
C1	C2	C3	H32	67.1°	60.0°
C1	C2	O2	P	118.2°	120.0°
C3	C2	O2	H2	118.2°	120.0°
C2	C3	O3	H31	125.2°	120.0°
C2	C3	O3	H32	125.3°	120.1°
C2	C3	H31	H32	115.9°	120.1°
C3	C2	O2	P	117.5°	120.1°
C2	C3	O3	HO3	180.0°	180.0°
O2	C2	C3	O3	67.0°	60.0°
O2	C2	C3	H31	58.2°	60.0°
O2	C2	C3	H32	167.7°	180.0°
C2	O2	P	O1P	177.0°	60.1°
C2	O2	P	O2P	59.6°	180.0°
C2	O2	P	O3P	61.6°	60.0°
H2	C2	C3	O3	175.9°	60.0°
H2	C2	C3	H31	58.9°	180.0°
H2	C2	C3	H32	50.6°	60.0°
H2	C2	O2	P	0.7°	0.0°
O3	C3	H31	H32	115.9°	120.0°
H31	C3	O3	HO3	54.7°	60.0°
H32	C3	O3	HO3	54.7°	59.9°
O2	P	O1P	O2P	111.7°	120.0°
O2	P	O1P	O3P	120.7°	120.0°
O2	P	O2P	O3P	118.2°	120.1°
O2	P	O2P	HOP2	180.0°	179.9°
O2	P	O3P	HOP3	180.0°	60.0°
O1P	P	O2P	O3P	125.9°	120.0°
O1P	P	O2P	HOP2	64.0°	60.0°
O1P	P	O3P	HOP3	59.8°	179.9°
O2P	P	O3P	HOP3	66.2°	60.1°
O3P	P	O2P	HOP2	61.9°	60.0°

223790

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