Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

P9D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.53Å1.51Å
C2C3sing1.53Å1.53Å
C2C4sing1.51Å1.49Å
C2C5sing1.53Å1.52Å
C4N6sing1.32Å1.36ÅAromatic
C4C9doub1.34Å1.39ÅAromatic
N6C7doub1.30Å1.35ÅAromatic
C7S8sing1.71Å1.62ÅAromatic
C7N10sing1.39Å1.34Å
S8C9sing1.76Å1.64ÅAromatic
N10C11sing1.35Å1.32Å
C11C12sing1.48Å1.49Å
C11O13doub1.21Å1.23Å
C12C14doub1.38Å1.40Å
C12C18sing1.41Å1.40Å
C14C15sing1.41Å1.38Å
C15N16sing1.37Å1.46Å
C15N19doub1.33Å1.36Å
N16C17sing1.36Å1.45Å
N16C20sing1.35Å1.44Å
C17C18doub1.35Å1.38Å
N19C21sing1.33Å1.38Å
C20C22sing1.41Å1.50Å
C20O23doub1.22Å1.25Å
C21C22doub1.41Å1.51Å
C21N24sing1.38Å1.41Å
C22C25sing1.46Å1.48Å
N24C32sing1.47Å1.48Å
N24C37sing1.47Å1.46Å
C25C26doub1.35Å1.32Å
C26C27sing1.46Å1.48Å
C27N28doub1.32Å1.33ÅAromatic
C27N31sing1.37Å1.35ÅAromatic
N28N29sing1.28Å1.40ÅAromatic
N29N30doub1.29Å1.41ÅAromatic
N30N31sing1.41Å1.40ÅAromatic
C32C33sing1.53Å1.54Å
C33O34sing1.45Å1.46Å
C33C35sing1.53Å1.52Å
O34C38sing1.35Å1.49Å
C35C36sing1.53Å1.51Å
C36C37sing1.53Å1.51Å
C38N39sing1.35Å1.35Å
C38O44doub1.22Å1.22Å
N39C40sing1.46Å1.46Å
C40C41sing1.53Å1.54Å
C41N42sing1.47Å1.50Å
N42C43sing1.47Å1.49Å
N42C48sing1.47Å1.48Å
N42C49sing1.47Å1.48Å
C43C45sing1.51Å1.54Å
C45O46sing1.22Å1.27Å
C45O47doub1.22Å1.26Å
C1H1sing1.09Å1.10Å
C1H1Asing1.09Å1.10Å
C1H1Bsing1.09Å1.10Å
C3H3sing1.09Å1.10Å
C3H3Asing1.09Å1.10Å
C3H3Bsing1.09Å1.10Å
C5H5sing1.09Å1.10Å
C5H5Asing1.09Å1.10Å
C5H5Bsing1.09Å1.10Å
C9H9sing1.08Å1.08Å
N10HN10sing0.97Å1.00Å
C14H14sing1.08Å1.08Å
C17H17sing1.08Å1.08Å
C18H18sing1.08Å1.08Å
C25H25sing1.08Å1.08Å
C26H26sing1.08Å1.08Å
N31HN31sing0.97Å1.00Å
C32H32sing1.09Å1.10Å
C32H32Asing1.09Å1.10Å
C33H33sing1.09Å1.10Å
C35H35sing1.09Å1.10Å
C35H35Asing1.09Å1.10Å
C36H36sing1.09Å1.10Å
C36H36Asing1.09Å1.10Å
C37H37sing1.09Å1.10Å
C37H37Asing1.09Å1.10Å
N39HN39sing0.97Å1.00Å
C40H40sing1.09Å1.10Å
C40H40Asing1.09Å1.10Å
C41H41sing1.09Å1.10Å
C41H41Asing1.09Å1.10Å
C43H43sing1.09Å1.10Å
C43H43Asing1.09Å1.10Å
C48H48sing1.09Å1.10Å
C48H48Asing1.09Å1.10Å
C48H48Bsing1.09Å1.10Å
C49H49sing1.09Å1.10Å
C49H49Asing1.09Å1.10Å
C49H49Bsing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1C2C3109.0°109.5°
C1C2C4107.1°109.5°
C1C2C5110.2°109.5°
C2C1H1109.5°109.5°
C2C1H1A109.5°109.4°
C2C1H1B109.5°109.4°
C3C2C4112.9°109.4°
C3C2C5110.6°109.4°
C2C3H3109.5°109.5°
C2C3H3A109.5°109.5°
C2C3H3B109.4°109.4°
C4C2C5107.0°109.5°
C2C4N6120.9°122.8°
C2C4C9119.1°122.7°
C2C5H5109.5°109.5°
C2C5H5A109.5°109.5°
C2C5H5B109.5°109.5°
N6C4C9120.0°114.6°
C4N6C7105.6°116.9°
C4C9S8104.1°108.0°
C4C9H9127.9°126.0°
N6C7S8114.7°110.1°
N6C7N10123.0°124.9°
S8C7N10122.3°125.0°
C7S8C995.7°90.4°
C7N10C11122.3°120.0°
C7N10HN10118.9°120.0°
S8C9H9128.0°126.0°
N10C11C12113.9°120.0°
N10C11O13125.5°120.0°
C11N10HN10118.9°120.0°
C12C11O13120.6°120.0°
C11C12C14117.8°120.4°
C11C12C18118.2°120.4°
C14C12C18124.0°119.2°
C12C14C15119.3°119.3°
C12C14H14120.4°120.4°
C12C18C17119.3°120.0°
C12C18H18120.3°120.0°
C14C15N16117.9°119.6°
C14C15N19119.9°119.0°
C15C14H14120.4°120.3°
N16C15N19122.2°121.4°
C15N16C17121.3°120.8°
C15N16C20119.5°120.1°
C15N19C21122.6°121.6°
C17N16C20119.2°119.1°
N16C17C18118.2°121.1°
N16C17H17120.9°119.5°
N16C20C22117.6°118.9°
N16C20O23119.2°120.5°
C18C17H17120.9°119.4°
C17C18H18120.4°120.0°
N19C21C22119.7°119.6°
N19C21N24120.4°120.2°
C22C20O23123.2°120.6°
C20C22C21118.4°118.4°
C20C22C25120.2°120.8°
C22C21N24119.9°120.2°
C21C22C25121.4°120.8°
C21N24C32119.2°120.6°
C21N24C37116.0°120.6°
C22C25C26115.2°120.0°
C22C25H25122.4°120.0°
C32N24C37124.8°118.7°
N24C32C33113.7°108.8°
N24C32H32108.4°109.6°
N24C32H32A108.4°109.6°
N24C37C36108.8°109.0°
N24C37H37109.7°109.6°
N24C37H37A109.7°109.6°
C25C26C27125.6°120.0°
C26C25H25122.4°120.0°
C25C26H26117.2°120.0°
C26C27N28122.5°126.6°
C26C27N31120.6°126.7°
C27C26H26117.2°120.0°
N28C27N31116.8°106.7°
C27N28N29103.8°110.5°
C27N31N30103.3°105.1°
C27N31HN31128.3°127.4°
N28N29N30107.9°110.6°
N29N30N31108.1°107.1°
N30N31HN31128.3°127.5°
C32C33O34115.1°109.5°
C32C33C35109.5°109.3°
C33C32H32108.4°109.6°
C33C32H32A108.4°109.6°
C32C33H33106.2°109.5°
O34C33C35111.8°109.5°
C33O34C38120.9°117.0°
O34C33H33107.2°109.5°
C33C35C36109.7°109.5°
C35C33H33106.5°109.5°
C33C35H35109.4°109.4°
C33C35H35A109.4°109.5°
O34C38N39122.4°120.0°
O34C38O44116.7°120.0°
C35C36C37108.6°109.4°
C36C35H35109.4°109.5°
C36C35H35A109.4°109.5°
C35C36H36109.7°109.5°
C35C36H36A109.7°109.5°
C37C36H36109.7°109.6°
C37C36H36A109.7°109.4°
C36C37H37109.7°109.5°
C36C37H37A109.6°109.4°
N39C38O44120.9°120.0°
C38N39C40124.5°120.0°
C38N39HN39117.8°120.0°
N39C40C41113.6°109.5°
C40N39HN39117.7°120.0°
N39C40H40108.4°109.5°
N39C40H40A108.4°109.5°
C40C41N42118.4°109.5°
C41C40H40108.5°109.5°
C41C40H40A108.4°109.5°
C40C41H41107.2°109.5°
C40C41H41A107.2°109.5°
C41N42C43111.8°109.5°
C41N42C48111.1°109.5°
C41N42C49109.4°109.5°
N42C41H41107.2°109.5°
N42C41H41A107.2°109.5°
C43N42C48108.0°109.5°
C43N42C49111.5°109.5°
N42C43C45122.2°109.5°
N42C43H43106.2°109.5°
N42C43H43A106.2°109.5°
C48N42C49104.9°109.5°
N42C48H48109.5°109.5°
N42C48H48A109.5°109.5°
N42C48H48B109.5°109.5°
N42C49H49109.5°109.4°
N42C49H49A109.4°109.5°
N42C49H49B109.5°109.4°
C43C45O46123.1°120.0°
C43C45O47115.5°120.0°
C45C43H43106.2°109.4°
C45C43H43A106.2°109.5°
O46C45O47121.4°120.0°
H1C1H1A109.5°109.5°
H1C1H1B109.4°109.5°
H1AC1H1B109.5°109.5°
H3C3H3A109.5°109.5°
H3C3H3B109.5°109.5°
H3AC3H3B109.5°109.5°
H5C5H5A109.5°109.5°
H5C5H5B109.4°109.4°
H5AC5H5B109.5°109.4°
H32C32H32A109.5°109.7°
H35C35H35A109.5°109.4°
H36C36H36A109.4°109.6°
H37C37H37A109.4°109.7°
H40C40H40A109.5°109.5°
H41C41H41A109.5°109.5°
H43C43H43A109.5°109.4°
H48C48H48A109.5°109.4°
H48C48H48B109.4°109.5°
H48AC48H48B109.5°109.4°
H49C49H49A109.5°109.5°
H49C49H49B109.5°109.5°
H49AC49H49B109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1C2C3C4118.9°120.0°
C1C2C3C5121.3°120.0°
C1C2C4C5118.1°120.1°
C1C2C4N684.1°104.9°
C1C2C4C994.4°74.7°
C2C1H1H1A120.0°120.0°
C2C1H1H1B120.0°120.0°
C2C1H1AH1B120.0°119.9°
C1C2C3H3180.0°60.0°
C1C2C3H3A60.0°180.0°
C1C2C3H3B60.0°60.0°
C1C2C5H5180.0°59.9°
C1C2C5H5A60.0°180.0°
C1C2C5H5B60.0°60.0°
C3C2C4C5121.9°119.9°
C3C2C4N635.9°15.1°
C3C2C4C9145.6°165.3°
C3C2C1H1180.0°60.0°
C3C2C1H1A60.0°180.0°
C3C2C1H1B60.0°60.0°
C2C3H3H3A120.0°120.0°
C2C3H3H3B120.0°120.0°
C2C3H3AH3B120.0°120.0°
C3C2C5H559.4°60.0°
C3C2C5H5A60.6°60.0°
C3C2C5H5B179.4°180.0°
C2C4N6C9178.5°179.6°
C2C4N6C7179.4°180.0°
C2C4C9S8179.6°180.0°
C4C2C1H157.5°180.0°
C4C2C1H1A177.5°60.0°
C4C2C1H1B62.5°60.0°
C4C2C3H361.1°60.0°
C4C2C3H3A58.9°60.0°
C4C2C3H3B178.9°180.0°
C4C2C5H563.9°180.0°
C4C2C5H5A176.1°59.9°
C4C2C5H5B56.1°60.1°
C2C4C9H90.4°0.0°
C5C2C4N6157.8°135.0°
C5C2C4C923.8°45.3°
C5C2C1H158.5°60.0°
C5C2C1H1A61.5°60.0°
C5C2C1H1B178.5°180.0°
C5C2C3H358.7°180.0°
C5C2C3H3A178.7°60.0°
C5C2C3H3B61.3°60.0°
C2C5H5H5A120.0°120.1°
C2C5H5H5B120.0°120.0°
C2C5H5AH5B120.0°120.0°
C4N6C7S80.3°0.1°
C4N6C7N10179.4°179.9°
N6C4C9S81.1°0.4°
N6C4C9H9178.9°179.7°
C9C4N6C71.0°0.3°
C4C9S8C70.7°0.3°
C4C9S8H9180.0°180.0°
N6C7S8N10179.7°180.0°
N6C7S8C90.3°0.1°
N6C7N10C11146.2°179.9°
N6C7N10HN1033.8°0.0°
S8C7N10C1133.5°0.1°
C7S8C9H9179.3°179.8°
S8C7N10HN10146.4°180.0°
N10C7S8C9180.0°179.9°
C7N10C11HN10180.0°179.9°
C7N10C11C12169.4°180.0°
C7N10C11O1312.1°0.1°
N10C11C12O13178.5°180.0°
N10C11C12C1426.9°179.9°
N10C11C12C18151.5°0.2°
C11C12C14C18178.3°179.7°
C11C12C14C15179.2°180.0°
C11C12C18C17179.0°179.7°
C12C11N10HN1010.6°0.1°
C11C12C14H140.8°0.0°
C11C12C18H181.0°0.1°
O13C11C12C14154.5°0.0°
O13C11C12C1827.1°179.7°
O13C11N10HN10167.9°180.0°
C12C14C15H14180.0°179.9°
C12C14C15N160.9°0.0°
C12C14C15N19178.9°180.0°
C14C12C18C170.8°0.6°
C14C12C18H18179.2°179.6°
C18C12C14C150.9°0.3°
C12C18C17N160.6°0.7°
C12C18C17H18180.0°179.7°
C18C12C14H14179.1°179.7°
C12C18C17H17179.4°179.7°
C14C15N16N19179.8°179.9°
C14C15N16C170.8°0.0°
C14C15N16C20180.0°179.9°
C14C15N19C21179.7°180.0°
C15N16C17C20179.2°179.9°
C15N16C17C180.7°0.4°
N16C15N19C210.5°0.0°
C15N16C20C220.1°0.1°
C15N16C20O23179.6°180.0°
N16C15C14H14179.1°180.0°
C15N16C17H17179.3°180.0°
N19C15N16C17178.9°179.9°
N19C15N16C200.2°0.0°
C15N19C21C220.5°0.1°
C15N19C21N24179.4°180.0°
N19C15C14H141.1°0.1°
N16C17C18H17180.0°179.6°
C17N16C20C22179.3°180.0°
C17N16C20O230.4°0.1°
N16C17C18H18179.4°179.6°
C20N16C17C18179.8°179.7°
N16C20C22O23179.7°179.9°
N16C20C22C210.2°0.1°
N16C20C22C25179.7°180.0°
C20N16C17H170.2°0.1°
N19C21C22C200.1°0.1°
N19C21C22N24179.9°180.0°
N19C21C22C25180.0°180.0°
N19C21N24C3261.1°94.9°
N19C21N24C37117.4°84.8°
C20C22C21C25179.9°179.9°
C20C22C21N24179.8°179.9°
C20C22C25C2626.0°5.9°
C20C22C25H25154.0°174.0°
O23C20C22C21179.6°180.0°
O23C20C22C250.5°0.0°
C22C21N24C32118.8°85.1°
C22C21N24C3762.7°95.2°
C21C22C25C26153.9°174.0°
C21C22C25H2526.1°6.0°
N24C21C22C250.1°0.0°
C21N24C32C37178.4°179.7°
C21N24C32C33144.6°126.4°
C21N24C37C36166.8°126.4°
C21N24C32H3224.0°113.9°
C21N24C32H32A94.7°6.5°
C21N24C37H3773.3°6.6°
C21N24C37H37A46.9°113.9°
C22C25C26H25180.0°180.0°
C22C25C26C27180.0°173.2°
C22C25C26H260.0°6.8°
N24C32C33H32120.6°119.8°
N24C32C33H32A120.6°119.8°
N24C32C33O34125.8°174.6°
N24C32C33C351.2°54.6°
C32N24C37C3614.8°53.3°
N24C32H32H32A118.1°120.3°
N24C32C33H33115.8°65.4°
C32N24C37H37105.1°173.1°
C32N24C37H37A134.7°66.4°
C37N24C32C3337.0°53.3°
N24C37C36C3539.1°54.4°
N24C37C36H37119.9°119.9°
N24C37C36H37A119.9°119.8°
C37N24C32H32157.6°66.5°
C37N24C32H32A83.6°173.1°
N24C37C36H36159.0°174.4°
N24C37C36H36A80.8°65.5°
N24C37H37H37A120.3°120.4°
C25C26C27H26180.0°180.0°
C25C26C27N2846.3°0.1°
C25C26C27N31135.9°179.7°
C26C27N28N31177.9°179.7°
C26C27N28N29178.6°180.0°
C26C27N31N30179.0°179.9°
C27C26C25H250.0°6.8°
C26C27N31HN311.0°0.0°
C27N28N29N300.0°0.0°
N28C27N31N301.1°0.4°
N28C27C26H26133.7°180.0°
N28C27N31HN31178.9°179.7°
N31C27N28N290.7°0.3°
C27N31N30N291.0°0.4°
C27N31N30HN31180.0°179.9°
N31C27C26H2644.1°0.3°
N28N29N30N310.6°0.2°
N29N30N31HN31179.0°179.7°
C32C33O34C35125.8°119.9°
C32C33O34H33117.9°120.0°
C32C33C35H33114.5°119.9°
C32C33O34C3886.0°150.0°
C32C33C35C3650.6°61.3°
C33C32H32H32A118.0°120.4°
C32C33C35H3569.4°58.7°
C32C33C35H35A170.6°178.6°
O34C33C35H33116.7°120.0°
O34C33C35C36179.4°178.7°
C33O34C38N39101.8°180.0°
C33O34C38O4480.5°0.0°
O34C33C32H325.1°54.8°
O34C33C32H32A113.6°65.6°
O34C33C35H3559.4°61.3°
O34C33C35H35A60.6°58.6°
C35C33O34C3839.8°90.1°
C33C35C36H35120.0°120.0°
C33C35C36H35A120.0°120.1°
C33C35C36C3775.1°61.2°
C35C33C32H32121.8°65.2°
C35C33C32H32A119.5°174.4°
C33C35H35H35A119.9°120.0°
C33C35C36H36165.1°178.7°
C33C35C36H36A44.8°58.6°
O34C38N39O44177.6°180.0°
O34C38N39C40114.9°180.0°
C38O34C33H33156.1°30.0°
O34C38N39HN3965.1°0.0°
C35C36C37H36119.9°120.0°
C35C36C37H36A119.9°119.9°
C36C35C33H3363.9°58.6°
C36C35H35H35A119.9°119.9°
C35C36H36H36A120.4°120.0°
C35C36C37H37159.1°174.3°
C35C36C37H37A80.8°65.4°
C37C36C35H3545.0°58.8°
C37C36C35H35A164.9°178.7°
C37C36H36H36A120.4°120.0°
C36C37H37H37A120.3°120.1°
C38N39C40HN39180.0°180.0°
C38N39C40C41139.7°180.0°
C38N39C40H4019.0°60.0°
C38N39C40H40A99.7°60.0°
O44C38N39C4067.5°0.0°
O44C38N39HN39112.5°180.0°
N39C40C41H40120.6°120.0°
N39C40C41H40A120.6°120.0°
N39C40C41N42125.3°180.0°
N39C40H40H40A118.1°120.0°
N39C40C41H41113.4°60.0°
N39C40C41H41A4.1°60.0°
C40C41N42H41121.3°120.0°
C40C41N42H41A121.3°120.0°
C40C41N42C4361.5°180.0°
C40C41N42C4859.3°60.0°
C40C41N42C49174.6°60.0°
C41C40N39HN3940.3°0.0°
C41C40H40H40A118.1°120.0°
C40C41H41H41A116.0°120.0°
C41N42C43C48122.6°120.0°
C41N42C43C49122.7°120.0°
C41N42C48C49118.1°120.0°
C41N42C43C4584.5°178.2°
N42C41C40H404.7°60.0°
N42C41C40H40A114.1°60.0°
N42C41H41H41A115.9°120.0°
C41N42C43H4337.2°61.8°
C41N42C43H43A153.7°58.1°
C41N42C48H48180.0°64.9°
C41N42C48H48A60.0°175.1°
C41N42C48H48B60.0°55.1°
C41N42C49H49180.0°65.2°
C41N42C49H49A60.0°174.7°
C41N42C49H49B60.0°54.7°
C43N42C48C49119.0°120.0°
N42C43C45H43121.7°120.0°
N42C43C45H43A121.8°120.0°
N42C43C45O4638.1°6.1°
N42C43C45O47143.6°173.9°
C43N42C41H41177.2°60.0°
C43N42C41H41A59.8°60.0°
N42C43H43H43A114.2°120.0°
C43N42C48H4857.1°175.1°
C43N42C48H48A63.0°55.1°
C43N42C48H48B177.0°64.9°
C43N42C49H4955.9°54.8°
C43N42C49H49A175.9°65.2°
C43N42C49H49B64.1°174.8°
C48N42C43C45152.9°58.2°
C48N42C41H4162.0°180.0°
C48N42C41H41A179.5°60.0°
C48N42C43H4385.3°178.2°
C48N42C43H43A31.1°61.9°
N42C48H48H48A120.0°120.0°
N42C48H48H48B120.0°120.1°
N42C48H48AH48B120.0°120.0°
C48N42C49H4960.7°174.8°
C48N42C49H49A59.3°54.7°
C48N42C49H49B179.3°65.3°
C49N42C43C4538.2°61.8°
C49N42C41H4153.3°60.0°
C49N42C41H41A64.1°180.0°
C49N42C43H43160.0°58.2°
C49N42C43H43A83.6°178.2°
C49N42C48H4861.9°55.1°
C49N42C48H48A178.1°64.9°
C49N42C48H48B58.1°175.2°
N42C49H49H49A120.0°120.0°
N42C49H49H49B120.0°119.9°
N42C49H49AH49B120.0°119.9°
C43C45O46O47178.3°179.9°
C45C43H43H43A114.3°120.0°
O46C45C43H4383.7°114.0°
O46C45C43H43A159.8°126.1°
O47C45C43H4394.7°66.1°
O47C45C43H43A21.8°53.9°
H1C1H1AH1B120.0°120.1°
H3C3H3AH3B120.0°120.0°
H5C5H5AH5B120.0°119.9°
H17C17C18H180.6°0.0°
H25C25C26H26180.0°173.2°
H32C32C33H33123.6°174.9°
H32AC32C33H334.8°54.4°
H33C33C35H35176.1°178.6°
H33C33C35H35A56.2°61.4°
H35C35C36H3674.9°61.3°
H35C35C36H36A164.9°178.6°
H35AC35C36H3645.0°58.6°
H35AC35C36H36A75.2°61.4°
H36C36C37H3781.1°65.7°
H36C36C37H37A39.1°54.6°
H36AC36C37H3739.2°54.4°
H36AC36C37H37A159.3°174.7°
HN39N39C40H40161.0°120.0°
HN39N39C40H40A80.3°120.0°
H40C40C41H41126.0°180.0°
H40C40C41H41A116.6°60.0°
H40AC40C41H417.2°60.0°
H40AC40C41H41A124.7°180.0°
H48C48H48AH48B119.9°119.9°
H49C49H49AH49B120.0°120.1°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon