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SummaryGeometryRelated PDB entries

P8M

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O43S02doub1.42Å1.57Å
N01S02sing1.66Å1.69Å
F42C05sing1.35Å1.34Å
S02O03doub1.42Å1.56Å
S02C04sing1.76Å1.78Å
O19C17doub1.22Å1.25Å
C05C04doub1.38Å1.36ÅAromatic
C05C06sing1.38Å1.37ÅAromatic
O18C17sing1.35Å1.25Å
C17C16sing1.47Å1.52Å
C04C09sing1.38Å1.37ÅAromatic
C06C07doub1.38Å1.39ÅAromatic
C16N15sing1.33Å1.40ÅAromatic
C16C20doub1.35Å1.32ÅAromatic
N15C14doub1.30Å1.26ÅAromatic
C20S21sing1.71Å1.81ÅAromatic
C09C08doub1.38Å1.38ÅAromatic
C14N13sing1.39Å1.38Å
C14S21sing1.76Å1.79ÅAromatic
N13C12sing1.36Å1.36ÅAromatic
N13N22sing1.40Å1.38ÅAromatic
C07C08sing1.38Å1.39ÅAromatic
C07C10sing1.51Å1.51Å
C38C12sing1.51Å1.51Å
C38C39sing1.53Å1.52Å
C12C11doub1.35Å1.37ÅAromatic
N22C23doub1.32Å1.31ÅAromatic
C23C11sing1.41Å1.45ÅAromatic
C23C24sing1.48Å1.49Å
C11C10sing1.51Å1.51Å
C33C32sing1.54Å1.55Å
C33C29sing1.54Å1.54Å
C24C25doub1.39Å1.39ÅAromatic
C24C36sing1.39Å1.39ÅAromatic
C40C39sing1.53Å1.51Å
C40C41sing1.53Å1.52Å
C25C26sing1.39Å1.40ÅAromatic
C36C35doub1.38Å1.38ÅAromatic
C39C41sing1.53Å1.52Å
C32C31sing1.54Å1.56Å
C26C27sing1.43Å1.42Å
C26C34doub1.40Å1.38ÅAromatic
C35C34sing1.38Å1.37ÅAromatic
C27C28trip1.17Å1.19Å
C28C29sing1.47Å1.46Å
C34F37sing1.35Å1.36Å
C29C30sing1.55Å1.55Å
C31C30sing1.55Å1.55Å
C38H1sing1.09Å1.10Å
C38H2sing1.09Å1.10Å
C39H3sing1.09Å1.10Å
C40H4sing1.09Å1.10Å
C40H5sing1.09Å1.10Å
C41H6sing1.09Å1.10Å
C41H7sing1.09Å1.10Å
C36H8sing1.08Å1.08Å
C33H9sing1.09Å1.10Å
C33H10sing1.09Å1.10Å
C30H11sing1.09Å1.10Å
C30H12sing1.09Å1.10Å
C25H13sing1.08Å1.08Å
C10H14sing1.09Å1.10Å
C10H15sing1.09Å1.10Å
N01H16sing0.97Å1.00Å
N01H17sing0.97Å1.00Å
C06H18sing1.08Å1.08Å
C08H19sing1.08Å1.08Å
C09H20sing1.08Å1.08Å
O18H21sing0.97Å0.95Å
C20H22sing1.08Å1.08Å
C29H23sing1.09Å1.10Å
C31H24sing1.09Å1.10Å
C31H25sing1.09Å1.10Å
C32H26sing1.09Å1.10Å
C32H27sing1.09Å1.10Å
C35H28sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O43S02N01106.0°106.4°
O43S02O03118.4°123.2°
O43S02C04112.5°106.4°
N01S02O03110.4°106.4°
N01S02C04105.1°107.2°
S02N01H16109.5°120.0°
S02N01H17109.5°120.1°
F42C05C04118.0°120.0°
F42C05C06120.7°120.0°
O03S02C04103.8°106.4°
S02C04C05119.9°120.0°
S02C04C09119.2°120.0°
O19C17O18131.8°119.9°
O19C17C16113.7°120.0°
C04C05C06121.3°120.0°
C05C04C09120.8°120.0°
C05C06C07119.0°120.0°
C05C06H18120.5°120.0°
O18C17C16114.5°120.0°
C17O18H21109.5°117.0°
C17C16N15121.7°122.5°
C17C16C20123.4°122.5°
C04C09C08119.0°120.0°
C04C09H20120.5°120.1°
C06C07C08119.8°120.1°
C06C07C10119.5°120.0°
C07C06H18120.5°120.0°
N15C16C20114.9°115.0°
C16N15C14113.6°115.7°
C16C20S21110.7°109.1°
C16C20H22124.6°125.4°
N15C14N13124.9°125.3°
N15C14S21114.5°109.5°
C20S21C1486.2°90.7°
S21C20H22124.6°125.5°
C09C08C07120.0°120.0°
C09C08H19120.0°120.0°
C08C09H20120.5°119.9°
N13C14S21120.2°125.3°
C14N13C12128.7°126.0°
C14N13N22119.2°126.0°
C12N13N22111.6°108.0°
N13C12C38126.1°126.1°
N13C12C11106.7°107.8°
N13N22C23105.6°108.1°
C08C07C10120.7°119.9°
C07C08H19120.0°120.0°
C07C10C11114.0°109.4°
C07C10H14108.3°109.5°
C07C10H15108.3°109.5°
C12C38C39114.3°109.5°
C38C12C11127.1°126.1°
C12C38H1108.2°109.5°
C12C38H2108.2°109.5°
C38C39C40119.9°117.5°
C38C39C41118.0°117.5°
C39C38H1108.2°109.5°
C39C38H2108.2°109.5°
C38C39H3115.7°115.6°
C12C11C23105.4°107.9°
C12C11C10125.2°126.0°
N22C23C11110.6°108.1°
N22C23C24117.8°125.9°
C11C23C24131.6°125.9°
C23C11C10129.4°126.1°
C23C24C25121.4°120.0°
C23C24C36120.3°120.1°
C11C10H14108.3°109.5°
C11C10H15108.3°109.4°
C32C33C29104.8°106.6°
C33C32C31106.0°106.6°
C32C33H9110.6°110.1°
C32C33H10110.6°110.1°
C33C32H26110.3°110.0°
C33C32H27110.3°110.0°
C33C29C28113.0°110.5°
C33C29C30103.5°104.2°
C29C33H9110.6°110.0°
C29C33H10110.6°110.0°
C33C29H23108.4°110.5°
C25C24C36118.3°119.9°
C24C25C26121.1°119.8°
C24C25H13119.4°120.1°
C24C36C35121.1°120.2°
C24C36H8119.5°119.8°
C39C40C4160.1°60.0°
C40C39C4160.1°60.0°
C40C39H3115.9°117.6°
C39C40H4120.0°117.5°
C39C40H5120.0°117.5°
C40C41C3959.8°60.0°
C41C40H4120.0°117.5°
C41C40H5120.0°117.5°
C40C41H6120.0°117.5°
C40C41H7120.0°117.5°
C25C26C27121.0°120.1°
C25C26C34118.4°119.8°
C26C25H13119.5°120.1°
C36C35C34119.6°120.2°
C35C36H8119.4°119.9°
C36C35H28120.2°119.9°
C41C39H3115.8°117.5°
C39C41H6120.0°117.5°
C39C41H7120.0°117.5°
C32C31C30106.4°104.2°
C32C31H24110.3°110.5°
C32C31H25110.2°110.6°
C31C32H26110.3°110.0°
C31C32H27110.4°110.0°
C27C26C34120.6°120.1°
C26C27C28179.2°180.0°
C26C34C35121.6°120.1°
C26C34F37119.4°120.0°
C35C34F37119.0°119.9°
C34C35H28120.2°119.9°
C27C28C29178.8°180.0°
C28C29C30113.8°110.4°
C28C29H23109.5°110.4°
C29C30C31105.4°102.8°
C29C30H11110.5°110.8°
C29C30H12110.5°110.8°
C30C29H23108.4°110.6°
C31C30H11110.5°110.8°
C31C30H12110.5°110.9°
C30C31H24110.2°110.4°
C30C31H25110.2°110.5°
H1C38H2109.5°109.4°
H4C40H5109.5°115.6°
H6C41H7109.5°115.6°
H9C33H10109.5°110.1°
H11C30H12109.5°110.6°
H14C10H15109.5°109.5°
H16N01H17109.4°119.9°
H24C31H25109.5°110.4°
H26C32H27109.5°110.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O43S02N01O03129.3°133.0°
O43S02N01C04119.3°113.5°
O43S02O03C04125.5°123.0°
O43S02C04C0544.3°178.3°
O43S02C04C09133.1°1.5°
O43S02N01H16180.0°23.5°
O43S02N01H1760.0°156.5°
N01S02O03C04112.2°114.1°
N01S02C04C0570.6°64.7°
N01S02C04C09112.1°115.0°
S02N01H16H17120.0°180.0°
F42C05C04S022.7°0.0°
F42C05C04C06177.9°180.0°
F42C05C04C09180.0°179.7°
F42C05C06C07179.2°180.0°
F42C05C06H180.8°0.1°
O03S02C04C05173.4°48.8°
O03S02C04C093.9°131.5°
O03S02N01H1650.7°156.5°
O03S02N01H1769.3°23.5°
S02C04C05C09177.3°179.7°
S02C04C05C06179.4°180.0°
S02C04C09C08179.0°179.7°
C04S02N01H1660.7°90.0°
C04S02N01H17179.3°90.0°
S02C04C09H201.0°0.0°
O19C17O18C16178.8°179.9°
O19C17C16N151.6°180.0°
O19C17C16C20178.6°0.1°
O19C17O18H210.0°0.1°
C04C05C06C071.4°0.0°
C05C04C09C081.7°0.5°
C04C05C06H18178.6°179.9°
C05C04C09H20178.3°179.8°
C06C05C04C092.1°0.3°
C05C06C07H18180.0°179.9°
C05C06C07C080.4°0.0°
C05C06C07C10179.7°180.0°
O18C17C16N15179.3°0.1°
O18C17C16C200.5°179.9°
C17C16N15C20179.8°179.9°
C17C16N15C14178.5°180.0°
C17C16C20S21179.7°179.6°
C16C17O18H21178.8°180.0°
C17C16C20H220.4°0.0°
C04C09C08H20180.0°179.7°
C04C09C08C070.7°0.5°
C04C09C08H19179.3°179.7°
C06C07C08C090.1°0.2°
C06C07C08C10179.9°180.0°
C06C07C10C1137.2°80.8°
C06C07C10H14157.8°159.2°
C06C07C10H1583.5°39.1°
C06C07C08H19179.9°180.0°
N15C16C20S210.5°0.3°
C16N15C14N13174.9°180.0°
C16N15C14S212.5°0.3°
N15C16C20H22179.4°180.0°
C20C16N15C141.3°0.0°
C16C20S21H22180.0°179.7°
C16C20S21C141.5°0.4°
N15C14S21C202.3°0.4°
N15C14N13S21172.0°179.7°
N15C14N13C1228.4°179.7°
N15C14N13N22160.2°0.3°
C20S21C14N13175.1°179.9°
C09C08C07H19180.0°179.8°
C09C08C07C10180.0°179.8°
C14N13C12N22171.9°180.0°
C14N13C12C387.2°0.0°
C14N13C12C11175.4°180.0°
C14N13N22C23176.2°179.8°
S21C14N13C12143.6°0.0°
S21C14N13N2227.8°180.0°
C14S21C20H22178.5°179.9°
N13C12C38C11176.9°179.9°
N13C12C38C3991.0°82.3°
C12N13N22C233.4°0.2°
N13C12C11C232.1°0.2°
N13C12C11C10179.7°179.9°
N13C12C38H1148.3°37.7°
N13C12C38H229.7°157.7°
N22N13C12C38179.1°180.0°
N22N13C12C113.5°0.0°
N13N22C23C111.9°0.4°
N13N22C23C24178.4°180.0°
C08C07C10C11142.9°99.2°
C08C07C10H1422.2°20.8°
C08C07C10H1596.4°140.9°
C08C07C06H18179.6°179.9°
C07C08C09H20179.3°179.8°
C07C10C11C12104.9°97.8°
C07C10C11C2377.4°82.5°
C07C10C11H14120.6°120.0°
C07C10C11H15120.7°120.0°
C07C10H14H15117.9°120.0°
C10C07C06H180.3°0.0°
C10C07C08H190.0°0.0°
C12C38C39H1120.7°120.0°
C12C38C39H2120.7°120.0°
C38C12C11C23179.5°179.8°
C38C12C11C102.3°0.0°
C12C38C39C40150.2°120.1°
C12C38C39C4180.5°171.4°
C12C38H1H2117.8°120.0°
C12C38C39H363.0°25.7°
C39C38C12C1192.1°97.7°
C38C39C40C41107.1°107.5°
C38C39C40H3146.7°145.0°
C38C39C41H3143.4°145.0°
C39C38H1H2117.8°120.0°
C38C39C40H4143.4°145.1°
C38C39C40H52.4°0.0°
C38C39C41H6140.3°0.0°
C38C39C41H70.8°145.1°
C12C11C23N220.1°0.3°
C12C11C23C10178.1°179.7°
C12C11C23C24179.5°180.0°
C11C12C38H128.6°142.3°
C11C12C38H2147.2°22.3°
C12C11C10H14134.4°22.2°
C12C11C10H1515.8°142.2°
N22C23C11C24179.6°179.7°
N22C23C11C10178.2°179.9°
N22C23C24C25163.9°45.9°
N22C23C24C3615.3°134.1°
C11C23C24C2516.5°133.7°
C11C23C24C36164.2°46.3°
C23C11C10H1443.3°157.5°
C23C11C10H15161.9°37.5°
C24C23C11C101.4°0.3°
C23C24C25C36179.3°180.0°
C23C24C25C26180.0°180.0°
C23C24C36C35180.0°179.9°
C23C24C36H80.0°0.3°
C23C24C25H130.0°0.3°
C11C10H14H15117.9°120.0°
C32C33C29H9119.3°119.3°
C32C33C29H10119.2°119.3°
C33C32C31H26119.4°119.3°
C33C32C31H27119.4°119.3°
C32C33C29C2886.2°95.1°
C32C33C29C3037.3°23.6°
C33C32C31C304.6°23.6°
C32C33H9H10122.1°121.5°
C32C33C29H23152.2°142.4°
C33C32C31H24114.9°95.1°
C33C32C31H25124.1°142.4°
C33C32H26H27121.6°121.4°
C29C33C32C3126.0°0.0°
C33C29C28C2785.7°19.9°
C33C29C28C30117.6°114.8°
C33C29C28H23121.0°122.6°
C33C29C30H23114.9°118.8°
C33C29C30C3134.4°37.9°
C29C33H9H10122.2°121.4°
C33C29C30H11153.7°156.3°
C33C29C30H1285.0°80.5°
C29C33C32H26145.4°119.3°
C29C33C32H2793.5°119.3°
C24C25C26H13180.0°179.7°
C25C24C36C350.7°0.0°
C24C25C26C27179.6°179.7°
C24C25C26C340.4°0.3°
C25C24C36H8179.3°179.7°
C36C24C25C260.7°0.0°
C24C36C35H8180.0°179.7°
C24C36C35C340.4°0.3°
C36C24C25H13179.3°179.7°
C24C36C35H28179.6°179.7°
C39C40C41H4109.5°107.5°
C39C40C41H5109.5°107.5°
C40C39C41H3106.3°107.5°
C40C39C38H189.0°119.9°
C40C39C38H229.5°0.0°
C39C40H4H5144.7°145.7°
C39C40C41H6109.4°107.5°
C39C40C41H7109.4°107.5°
C41C40H4H5144.7°145.6°
C40C41H6H7144.9°145.7°
C25C26C27C34180.0°180.0°
C25C26C34C350.0°0.6°
C25C26C27C28160.7°53.8°
C25C26C34F37179.7°180.0°
C36C35C34C260.1°0.6°
C36C35C34H28180.0°180.0°
C36C35C34F37179.7°180.0°
C41C39C38H1158.8°51.4°
C41C39C38H240.3°68.6°
C39C41H6H7144.8°145.7°
C32C31C30C2918.4°37.9°
C32C31C30H24119.5°118.7°
C32C31C30H25119.5°118.8°
C31C32C33H9145.3°119.3°
C31C32C33H1093.3°119.3°
C32C31C30H11137.8°156.3°
C32C31C30H12101.0°80.5°
C32C31H24H25121.5°122.7°
C31C32H26H27121.6°121.4°
C27C26C34C35180.0°179.4°
C26C27C28C2939.4°146.1°
C27C26C34F370.3°0.0°
C27C26C25H130.4°0.0°
C26C34C35F37179.8°179.4°
C34C26C27C2819.3°126.2°
C34C26C25H13179.6°180.0°
C26C34C35H28179.9°179.4°
C34C35C36H8179.6°180.0°
C27C28C29C30156.7°134.7°
C27C28C29H2335.3°102.7°
C28C29C30H23122.1°122.5°
C28C29C30C3188.6°80.8°
C28C29C33H933.1°145.6°
C28C29C33H10154.6°24.2°
C28C29C30H1130.7°37.6°
C28C29C30H12152.0°160.8°
F37C34C35H280.3°0.0°
C29C30C31H11119.4°118.4°
C29C30C31H12119.4°118.4°
C30C29C33H9156.6°95.7°
C30C29C33H1081.9°142.9°
C29C30H11H12121.9°123.3°
C29C30C31H24137.9°80.8°
C29C30C31H25101.1°156.7°
C31C30H11H12121.9°123.4°
C31C30C29H23149.3°156.7°
C30C31H24H25121.4°122.6°
C30C31C32H26124.1°95.7°
C30C31C32H27114.8°142.9°
H1C38C39H357.7°94.3°
H2C38C39H3176.3°145.7°
H3C39C40H43.3°0.0°
H3C39C40H5144.3°145.0°
H3C39C41H63.1°145.0°
H3C39C41H7144.3°0.0°
H4C40C41H60.1°145.0°
H4C40C41H7141.1°0.1°
H5C40C41H6141.2°0.0°
H5C40C41H70.0°145.0°
H8C36C35H280.4°0.0°
H9C33C29H2388.5°23.1°
H9C33C32H2695.3°0.0°
H9C33C32H2725.8°121.5°
H10C33C29H2333.0°98.3°
H10C33C32H2626.2°121.4°
H10C33C32H27147.3°0.0°
H11C30C29H2391.3°84.9°
H11C30C31H24102.7°37.6°
H11C30C31H2518.2°84.9°
H12C30C29H2329.9°38.3°
H12C30C31H2418.5°160.9°
H12C30C31H25139.5°38.4°
H19C08C09H200.7°0.0°
H24C31C32H264.6°145.7°
H24C31C32H27125.7°24.2°
H25C31C32H26116.4°23.1°
H25C31C32H274.7°98.3°

246704

PDB entries from 2025-12-24

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