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Summary Geometry Related PDB entries

P6Z

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C07	N08	sing	1.34Å	1.32Å	Aromatic
C07	C06	doub	1.35Å	1.36Å	Aromatic
N08	C09	doub	1.31Å	1.34Å	Aromatic
C06	N05	sing	1.37Å	1.31Å	Aromatic
C09	N05	sing	1.36Å	1.34Å	Aromatic
N05	C04	sing	1.40Å	1.45Å
C10	C04	doub	1.39Å	1.39Å	Aromatic
C10	C11	sing	1.38Å	1.39Å	Aromatic
C04	C03	sing	1.39Å	1.39Å	Aromatic
C11	C12	doub	1.38Å	1.39Å	Aromatic
C03	C02	doub	1.40Å	1.39Å	Aromatic
C12	C02	sing	1.40Å	1.39Å	Aromatic
C02	C01	sing	1.47Å	1.53Å
C01	H1	sing	1.08Å	1.08Å
C03	H4	sing	1.08Å	1.08Å
C06	H5	sing	1.08Å	1.08Å
C07	H6	sing	1.08Å	1.08Å
C09	H7	sing	1.08Å	1.08Å
C10	H8	sing	1.08Å	1.08Å
C11	H9	sing	1.08Å	1.08Å
C12	H10	sing	1.08Å	1.08Å
C01	O1	doub	1.21Å	1.43Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N08	C07	C06	107.8°	108.2°
C07	N08	C09	107.9°	109.4°
N08	C07	H6	126.1°	125.9°
C07	C06	N05	107.9°	106.8°
C07	C06	H5	126.0°	126.6°
C06	C07	H6	126.1°	125.9°
N08	C09	N05	107.9°	108.6°
N08	C09	H7	126.0°	125.8°
C06	N05	C09	108.5°	107.0°
C06	N05	C04	126.0°	126.5°
N05	C06	H5	126.1°	126.5°
C09	N05	C04	125.5°	126.5°
N05	C09	H7	126.0°	125.7°
N05	C04	C10	120.2°	120.0°
N05	C04	C03	119.9°	120.0°
C04	C10	C11	119.9°	120.3°
C10	C04	C03	119.8°	120.0°
C04	C10	H8	120.1°	119.8°
C10	C11	C12	120.2°	120.2°
C11	C10	H8	120.0°	119.8°
C10	C11	H9	119.9°	119.9°
C04	C03	C02	120.2°	119.8°
C04	C03	H4	119.9°	120.1°
C11	C12	C02	119.9°	120.0°
C12	C11	H9	119.9°	119.8°
C11	C12	H10	120.0°	120.0°
C03	C02	C12	119.9°	119.7°
C03	C02	C01	119.9°	120.2°
C02	C03	H4	119.9°	120.1°
C12	C02	C01	120.2°	120.2°
C02	C12	H10	120.1°	120.0°
C02	C01	H1	112.2°	120.0°
C02	C01	O1	135.5°	120.0°
H1	C01	O1	112.2°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N08	C07	C06	H6	180.0°	180.0°
N08	C07	C06	N05	0.1°	0.0°
C07	N08	C09	N05	0.1°	0.5°
N08	C07	C06	H5	179.9°	179.7°
C07	N08	C09	H7	179.9°	180.0°
C06	C07	N08	C09	0.0°	0.3°
C07	C06	N05	H5	180.0°	179.7°
C07	C06	N05	C09	0.1°	0.3°
C07	C06	N05	C04	179.9°	179.8°
N08	C09	N05	C06	0.1°	0.5°
N08	C09	N05	H7	180.0°	179.5°
N08	C09	N05	C04	179.9°	179.6°
C09	N08	C07	H6	180.0°	179.8°
C06	N05	C09	C04	179.8°	179.9°
C06	N05	C04	C10	112.7°	0.1°
C06	N05	C04	C03	67.5°	180.0°
N05	C06	C07	H6	179.9°	179.9°
C06	N05	C09	H7	179.9°	180.0°
C09	N05	C04	C10	67.1°	180.0°
C09	N05	C04	C03	112.8°	0.0°
C09	N05	C06	H5	179.9°	180.0°
N05	C04	C10	C03	179.9°	179.9°
N05	C04	C10	C11	179.9°	180.0°
N05	C04	C03	C02	179.7°	180.0°
N05	C04	C03	H4	0.3°	0.0°
C04	N05	C06	H5	0.1°	0.1°
C04	N05	C09	H7	0.1°	0.1°
N05	C04	C10	H8	0.1°	0.0°
C04	C10	C11	H8	180.0°	180.0°
C04	C10	C11	C12	0.1°	0.2°
C10	C04	C03	C02	0.1°	0.0°
C10	C04	C03	H4	179.8°	179.9°
C04	C10	C11	H9	179.9°	180.0°
C11	C10	C04	C03	0.0°	0.1°
C10	C11	C12	H9	180.0°	179.8°
C10	C11	C12	C02	0.1°	0.5°
C10	C11	C12	H10	179.9°	180.0°
C04	C03	C02	H4	180.0°	180.0°
C04	C03	C02	C12	0.2°	0.3°
C04	C03	C02	C01	180.0°	180.0°
C03	C04	C10	H8	180.0°	180.0°
C11	C12	C02	C03	0.1°	0.6°
C11	C12	C02	H10	180.0°	179.5°
C11	C12	C02	C01	179.8°	179.7°
C12	C11	C10	H8	179.9°	179.8°
C03	C02	C12	C01	179.8°	179.7°
C03	C02	C01	H1	51.1°	180.0°
C03	C02	C12	H10	179.9°	180.0°
C03	C02	C01	O1	128.9°	0.2°
C12	C02	C01	H1	128.7°	0.3°
C12	C02	C03	H4	179.8°	179.8°
C02	C12	C11	H9	179.9°	179.7°
C12	C02	C01	O1	51.3°	179.5°
C02	C01	H1	O1	180.0°	179.8°
C01	C02	C03	H4	0.0°	0.1°
C01	C02	C12	H10	0.2°	0.3°
H5	C06	C07	H6	0.1°	0.2°
H8	C10	C11	H9	0.1°	0.0°
H9	C11	C12	H10	0.1°	0.2°

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