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Summary Geometry Related PDB entries

P5Q

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C09	N08	sing	1.33Å	1.35Å	Aromatic
C09	N10	doub	1.31Å	1.32Å	Aromatic
N08	C07	doub	1.31Å	1.34Å	Aromatic
N10	N06	sing	1.40Å	1.34Å	Aromatic
C07	N06	sing	1.35Å	1.31Å	Aromatic
N06	C05	sing	1.40Å	1.45Å
C05	C11	doub	1.39Å	1.39Å	Aromatic
C05	C04	sing	1.39Å	1.39Å	Aromatic
C11	C12	sing	1.38Å	1.38Å	Aromatic
C04	C03	doub	1.38Å	1.38Å	Aromatic
C12	C02	doub	1.38Å	1.39Å	Aromatic
C03	C02	sing	1.38Å	1.39Å	Aromatic
C02	C01	sing	1.51Å	1.52Å
C01	H1	sing	1.09Å	1.10Å
C01	H2	sing	1.09Å	1.10Å
C01	H3	sing	1.09Å	1.10Å
C03	H4	sing	1.08Å	1.08Å
C04	H5	sing	1.08Å	1.08Å
C07	H6	sing	1.08Å	1.08Å
C09	H7	sing	1.08Å	1.08Å
C11	H8	sing	1.08Å	1.08Å
C12	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N08	C09	N10	107.6°	109.0°
C09	N08	C07	108.0°	109.8°
N08	C09	H7	126.2°	125.5°
C09	N10	N06	107.6°	106.8°
N10	C09	H7	126.2°	125.5°
N08	C07	N06	107.3°	108.0°
N08	C07	H6	126.3°	126.0°
N10	N06	C07	109.4°	106.3°
N10	N06	C05	125.0°	126.8°
C07	N06	C05	125.6°	126.8°
N06	C07	H6	126.3°	126.0°
N06	C05	C11	119.4°	120.1°
N06	C05	C04	120.1°	120.0°
C11	C05	C04	120.4°	119.9°
C05	C11	C12	119.7°	119.9°
C05	C11	H8	120.1°	120.0°
C05	C04	C03	119.9°	119.9°
C05	C04	H5	120.1°	120.1°
C11	C12	C02	119.8°	120.1°
C12	C11	H8	120.2°	120.1°
C11	C12	H9	120.1°	119.9°
C04	C03	C02	119.6°	120.1°
C04	C03	H4	120.2°	120.0°
C03	C04	H5	120.1°	120.0°
C12	C02	C03	120.5°	120.1°
C12	C02	C01	119.5°	119.9°
C02	C12	H9	120.1°	120.0°
C03	C02	C01	120.0°	120.0°
C02	C03	H4	120.2°	119.9°
C02	C01	H1	109.5°	109.5°
C02	C01	H2	109.5°	109.5°
C02	C01	H3	109.5°	109.4°
H1	C01	H2	109.4°	109.6°
H1	C01	H3	109.5°	109.5°
H2	C01	H3	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N08	C09	N10	H7	180.0°	179.7°
N08	C09	N10	N06	0.2°	0.5°
C09	N08	C07	N06	0.1°	0.0°
C09	N08	C07	H6	179.9°	179.7°
N10	C09	N08	C07	0.1°	0.3°
C09	N10	N06	C07	0.1°	0.5°
C09	N10	N06	C05	179.5°	179.6°
N08	C07	N06	N10	0.0°	0.3°
N08	C07	N06	H6	180.0°	179.7°
N08	C07	N06	C05	179.6°	179.8°
C07	N08	C09	H7	179.9°	180.0°
N10	N06	C07	C05	179.6°	179.9°
N10	N06	C05	C11	131.5°	0.1°
N10	N06	C05	C04	47.9°	179.8°
N10	N06	C07	H6	180.0°	180.0°
N06	N10	C09	H7	179.9°	179.9°
C07	N06	C05	C11	48.1°	180.0°
C07	N06	C05	C04	132.5°	0.3°
N06	C05	C11	C04	179.4°	179.7°
N06	C05	C11	C12	179.5°	180.0°
N06	C05	C04	C03	179.6°	179.7°
N06	C05	C04	H5	0.4°	0.3°
C05	N06	C07	H6	0.4°	0.0°
N06	C05	C11	H8	0.6°	0.3°
C05	C11	C12	H8	180.0°	179.8°
C11	C05	C04	C03	0.2°	0.0°
C05	C11	C12	C02	0.1°	0.5°
C11	C05	C04	H5	179.8°	180.0°
C05	C11	C12	H9	179.9°	180.0°
C04	C05	C11	C12	0.1°	0.2°
C05	C04	C03	H5	180.0°	180.0°
C05	C04	C03	C02	0.1°	0.0°
C05	C04	C03	H4	179.8°	180.0°
C04	C05	C11	H8	179.9°	180.0°
C11	C12	C02	H9	180.0°	179.6°
C11	C12	C02	C03	0.2°	0.5°
C11	C12	C02	C01	179.9°	179.8°
C04	C03	C02	C12	0.1°	0.2°
C04	C03	C02	H4	180.0°	180.0°
C04	C03	C02	C01	179.9°	180.0°
C12	C02	C03	C01	179.8°	179.7°
C12	C02	C01	H1	89.9°	90.3°
C12	C02	C01	H2	150.1°	29.8°
C12	C02	C01	H3	30.1°	149.8°
C12	C02	C03	H4	180.0°	179.8°
C02	C12	C11	H8	179.8°	179.7°
C03	C02	C01	H1	89.9°	89.9°
C03	C02	C01	H2	30.1°	150.0°
C03	C02	C01	H3	150.1°	30.0°
C02	C03	C04	H5	179.9°	180.0°
C03	C02	C12	H9	179.8°	180.0°
C02	C01	H1	H2	120.0°	120.0°
C02	C01	H1	H3	120.0°	119.9°
C02	C01	H2	H3	120.0°	119.9°
C01	C02	C03	H4	0.1°	0.0°
C01	C02	C12	H9	0.0°	0.2°
H1	C01	H2	H3	120.0°	120.0°
H4	C03	C04	H5	0.2°	0.0°
H8	C11	C12	H9	0.1°	0.2°

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