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Summary Geometry Related PDB entries

P5N

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N12	C11	sing	1.34Å	1.33Å	Aromatic
N12	C13	doub	1.30Å	1.34Å	Aromatic
C11	C10	doub	1.35Å	1.36Å	Aromatic
C13	N09	sing	1.36Å	1.34Å	Aromatic
C10	N09	sing	1.37Å	1.31Å	Aromatic
N09	C06	sing	1.40Å	1.45Å
C06	C07	doub	1.39Å	1.39Å	Aromatic
C06	C05	sing	1.39Å	1.39Å	Aromatic
C07	C08	sing	1.38Å	1.38Å	Aromatic
C05	C04	doub	1.38Å	1.39Å	Aromatic
C08	C03	doub	1.40Å	1.38Å	Aromatic
C04	C03	sing	1.40Å	1.39Å	Aromatic
C03	C01	sing	1.47Å	1.52Å
C10	H1	sing	1.08Å	1.08Å
C13	H2	sing	1.08Å	1.08Å
C01	H3	sing	1.08Å	1.08Å
C04	H6	sing	1.08Å	1.08Å
C05	H7	sing	1.08Å	1.08Å
C07	H8	sing	1.08Å	1.08Å
C08	H9	sing	1.08Å	1.08Å
C11	H10	sing	1.08Å	1.08Å
C01	O1	doub	1.21Å	29.32Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C11	N12	C13	107.5°	109.4°
N12	C11	C10	108.5°	108.2°
N12	C11	H10	125.7°	125.9°
N12	C13	N09	107.6°	108.6°
N12	C13	H2	126.2°	125.7°
C11	C10	N09	107.1°	106.8°
C11	C10	H1	126.5°	126.6°
C10	C11	H10	125.7°	125.9°
C13	N09	C10	109.3°	107.0°
C13	N09	C06	124.7°	126.5°
N09	C13	H2	126.2°	125.7°
C10	N09	C06	126.0°	126.5°
N09	C10	H1	126.5°	126.6°
N09	C06	C07	118.6°	119.9°
N09	C06	C05	120.7°	119.9°
C07	C06	C05	120.7°	120.2°
C06	C07	C08	119.9°	120.1°
C06	C07	H8	120.1°	119.9°
C06	C05	C04	119.3°	120.1°
C06	C05	H7	120.4°	120.0°
C07	C08	C03	119.7°	119.9°
C08	C07	H8	120.0°	120.0°
C07	C08	H9	120.1°	120.1°
C05	C04	C03	120.0°	119.9°
C05	C04	H6	120.0°	120.0°
C04	C05	H7	120.3°	119.9°
C08	C03	C04	120.4°	119.8°
C08	C03	C01	119.0°	120.1°
C03	C08	H9	120.2°	120.1°
C04	C03	C01	120.6°	120.1°
C03	C04	H6	120.0°	120.1°
C03	C01	H3	153.1°	120.0°
C03	C01	O1	53.7°	119.9°
H3	C01	O1	153.1°	120.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N12	C11	C10	H10	180.0°	179.9°
C11	N12	C13	N09	0.7°	0.4°
N12	C11	C10	N09	0.3°	0.1°
N12	C11	C10	H1	179.7°	179.7°
C11	N12	C13	H2	179.3°	180.0°
C13	N12	C11	C10	0.6°	0.2°
N12	C13	N09	H2	180.0°	179.6°
N12	C13	N09	C10	0.6°	0.5°
N12	C13	N09	C06	179.1°	179.6°
C13	N12	C11	H10	179.4°	179.7°
C11	C10	N09	C13	0.2°	0.3°
C11	C10	N09	H1	180.0°	179.6°
C11	C10	N09	C06	178.7°	179.7°
C13	N09	C10	C06	178.5°	180.0°
C13	N09	C06	C07	131.7°	0.0°
C13	N09	C06	C05	47.1°	179.7°
C13	N09	C10	H1	179.8°	180.0°
C10	N09	C06	C07	46.6°	179.9°
C10	N09	C06	C05	134.6°	0.3°
C10	N09	C13	H2	179.4°	180.0°
N09	C10	C11	H10	179.7°	180.0°
N09	C06	C07	C05	178.8°	179.7°
N09	C06	C07	C08	178.9°	180.0°
N09	C06	C05	C04	179.2°	179.8°
C06	N09	C10	H1	1.3°	0.1°
C06	N09	C13	H2	0.9°	0.0°
N09	C06	C05	H7	0.8°	0.3°
N09	C06	C07	H8	1.1°	0.3°
C06	C07	C08	H8	180.0°	179.7°
C07	C06	C05	C04	0.4°	0.1°
C06	C07	C08	C03	0.2°	0.6°
C07	C06	C05	H7	179.6°	180.0°
C06	C07	C08	H9	179.8°	180.0°
C05	C06	C07	C08	0.1°	0.3°
C06	C05	C04	H7	180.0°	179.9°
C06	C05	C04	C03	0.4°	0.1°
C06	C05	C04	H6	179.6°	180.0°
C05	C06	C07	H8	179.9°	180.0°
C07	C08	C03	H9	180.0°	179.5°
C07	C08	C03	C04	0.2°	0.6°
C07	C08	C03	C01	179.6°	179.8°
C05	C04	C03	C08	0.1°	0.3°
C05	C04	C03	H6	180.0°	179.9°
C05	C04	C03	C01	179.9°	180.0°
C08	C03	C04	C01	179.8°	179.7°
C08	C03	C01	H3	119.9°	0.3°
C08	C03	C04	H6	179.9°	179.8°
C03	C08	C07	H8	179.8°	179.8°
C08	C03	C01	O1	60.0°	179.7°
C04	C03	C01	H3	60.3°	180.0°
C03	C04	C05	H7	179.6°	180.0°
C04	C03	C08	H9	179.8°	180.0°
C04	C03	C01	O1	119.7°	0.0°
C03	C01	H3	O1	179.9°	180.0°
C01	C03	C04	H6	0.1°	0.1°
C01	C03	C08	H9	0.4°	0.3°
H1	C10	C11	H10	0.3°	0.4°
H6	C04	C05	H7	0.4°	0.1°
H8	C07	C08	H9	0.2°	0.3°

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