Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

P5B

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C14O1doub1.21Å1.22Å
C14N5sing1.35Å1.37Å
C14C5sing1.51Å1.56Å
N5C15sing1.47Å1.45Å
N5HN5sing0.97Å1.02Å
C15C18sing1.53Å1.52Å
C15C20sing1.51Å1.54Å
C15H15sing1.09Å1.12Å
C18C19sing1.53Å1.53Å
C18H181sing1.09Å1.11Å
C18H182sing1.09Å1.11Å
C19C2sing1.51Å1.51Å
C19H191sing1.09Å1.12Å
C19H192sing1.09Å1.12Å
C20O5doub1.21Å1.23Å
C20N6sing1.35Å1.35Å
N6C21sing1.46Å1.43Å
N6HN6sing0.97Å1.02Å
C21C25sing1.51Å1.50Å
C21H211sing1.09Å1.11Å
C21H212sing1.09Å1.12Å
C16C17sing1.38Å1.39ÅAromatic
C16C25doub1.38Å1.41ÅAromatic
C16H16sing1.08Å1.10Å
C17C22doub1.40Å1.41ÅAromatic
C17H17sing1.08Å1.10Å
C22C23sing1.39Å1.40ÅAromatic
C22C26sing1.48Å1.47Å
C23C24doub1.38Å1.41ÅAromatic
C23H23sing1.08Å1.10Å
C24C25sing1.38Å1.41ÅAromatic
C24H24sing1.08Å1.10Å
C26N1doub1.30Å1.33Å
C26N2sing1.38Å1.33Å
N1HN1sing0.97Å1.02Å
C2O2doub1.21Å1.21Å
C2N3sing1.35Å1.32Å
N3HN31sing0.97Å1.02Å
N3HN32sing0.97Å1.02Å
C1C5sing1.53Å1.52Å
C1C12sing1.51Å1.49Å
C1H11Asing1.09Å1.11Å
C1H12sing1.09Å1.12Å
N4C5sing1.46Å1.45Å
N4S1sing1.66Å1.72Å
N4HN4sing0.97Å1.02Å
C5H5sing1.09Å1.11Å
S1O4doub1.42Å1.42Å
S1O3doub1.42Å1.42Å
S1C9sing1.81Å1.72Å
C9C8sing1.53Å1.53Å
C9H91sing1.09Å1.11Å
C9H92sing1.09Å1.11Å
C8H81sing1.09Å1.11Å
C8H82sing1.09Å1.12Å
C8H83sing1.09Å1.12Å
N2HN21sing0.97Å1.02Å
N2HN22sing0.97Å1.02Å
C10C7doub1.38Å1.44ÅAromatic
C10C6sing1.39Å1.43ÅAromatic
C10H10sing1.08Å1.10Å
C7C3sing1.39Å1.39ÅAromatic
C7H7sing1.08Å1.10Å
C3C4doub1.41Å1.44ÅAromatic
C3N7sing1.38Å1.38ÅAromatic
C4C11sing1.40Å1.40ÅAromatic
C4C12sing1.46Å1.43ÅAromatic
C11C6doub1.37Å1.44ÅAromatic
C11H11sing1.08Å1.10Å
C6H6sing1.08Å1.10Å
N7C13sing1.37Å1.35ÅAromatic
N7HN7sing0.97Å1.02Å
C13C12doub1.34Å1.40ÅAromatic
C13H13sing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C14N5122.8°120.0°
O1C14C5119.9°120.0°
N5C14C5117.2°120.0°
C14N5C15118.3°120.0°
C14N5HN5118.0°120.1°
C14C5C1108.7°109.4°
C14C5N4109.9°109.5°
C14C5H5109.6°109.5°
C15N5HN5123.8°119.9°
N5C15C18110.8°109.5°
N5C15C20108.2°109.5°
N5C15H15110.3°109.5°
C18C15C20111.8°109.5°
C18C15H15106.5°109.5°
C15C18C19114.6°109.5°
C15C18H181110.3°109.5°
C15C18H182110.4°109.5°
C20C15H15109.3°109.4°
C15C20O5121.0°120.0°
C15C20N6113.8°120.1°
C19C18H181110.4°109.4°
C19C18H182110.3°109.4°
C18C19C2106.9°109.5°
C18C19H191113.2°109.5°
C18C19H192113.2°109.5°
H181C18H18299.9°109.5°
C2C19H191113.2°109.5°
C2C19H192113.2°109.4°
C19C2O2121.7°120.0°
C19C2N3115.0°120.0°
H191C19H19297.3°109.5°
O5C20N6125.1°120.0°
C20N6C21116.5°120.0°
C20N6HN6119.0°119.9°
C21N6HN6124.6°120.1°
N6C21C25114.8°109.5°
N6C21H211110.3°109.5°
N6C21H212110.3°109.5°
C25C21H211110.3°109.4°
C25C21H212110.3°109.4°
C21C25C16119.4°119.9°
C21C25C24120.8°119.9°
H211C21H212100.0°109.5°
C17C16C25119.4°120.2°
C17C16H16119.9°119.9°
C16C17C22121.4°119.9°
C16C17H17118.9°120.1°
C25C16H16120.7°119.9°
C16C25C24119.8°120.2°
C22C17H17119.7°120.0°
C17C22C23119.1°119.7°
C17C22C26119.5°120.2°
C23C22C26121.4°120.2°
C22C23C24120.1°119.9°
C22C23H23119.8°120.0°
C22C26N1119.9°120.0°
C22C26N2122.3°120.0°
C24C23H23120.1°120.1°
C23C24C25120.2°120.2°
C23C24H24119.8°119.9°
C25C24H24120.0°119.9°
N1C26N2117.8°120.0°
C26N1HN1102.1°120.0°
C26N2HN21107.7°120.0°
C26N2HN22122.3°120.0°
O2C2N3123.2°120.0°
C2N3HN31115.0°120.0°
C2N3HN32123.2°120.0°
HN31N3HN32121.6°120.0°
C5C1C12111.2°109.5°
C5C1H11A111.6°109.5°
C5C1H12111.6°109.5°
C1C5N4109.2°109.5°
C1C5H5110.3°109.5°
C12C1H11A111.6°109.5°
C12C1H12111.6°109.5°
C1C12C4128.0°126.5°
C1C12C13125.2°126.5°
H11AC1H1298.8°109.4°
C5N4S1117.8°120.0°
C5N4HN4109.2°120.0°
N4C5H5109.1°109.5°
S1N4HN4109.2°120.0°
N4S1O4103.4°102.8°
N4S1O3104.4°102.8°
N4S1C9107.7°103.2°
O4S1O3120.1°122.1°
O4S1C9109.7°111.6°
O3S1C9110.6°111.6°
S1C9C8102.7°109.5°
S1C9H91114.8°109.5°
S1C9H92114.8°109.5°
C8C9H91114.8°109.4°
C8C9H92114.8°109.5°
C9C8H81114.8°109.5°
C9C8H82102.7°109.5°
C9C8H83114.8°109.4°
H91C9H9295.7°109.4°
H81C8H82114.8°109.5°
H81C8H8395.7°109.5°
H82C8H83114.8°109.4°
HN21N2HN22107.6°120.0°
C7C10C6119.2°120.7°
C7C10H10120.8°119.6°
C10C7C3122.1°119.7°
C10C7H7120.6°120.1°
C6C10H10120.0°119.7°
C10C6C11118.1°120.5°
C10C6H6120.5°119.7°
C3C7H7117.2°120.1°
C7C3C4119.3°119.4°
C7C3N7133.0°133.5°
C4C3N7107.8°107.2°
C3C4C11119.0°119.9°
C3C4C12105.8°106.0°
C3N7C13109.6°109.9°
C3N7HN7126.2°125.1°
C11C4C12135.2°134.1°
C4C11C6122.3°119.8°
C4C11H11117.6°120.1°
C4C12C13106.8°107.0°
C6C11H11120.1°120.1°
C11C6H6121.3°119.8°
C13N7HN7124.2°125.0°
N7C13C12110.1°109.9°
N7C13H13123.3°125.1°
C12C13H13126.6°125.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C14N5C5180.0°179.9°
O1C14N5C150.6°0.0°
O1C14N5HN5179.4°180.0°
O1C14C5C184.8°100.1°
O1C14C5N434.7°20.0°
O1C14C5H5154.6°140.0°
C14N5C15HN5180.0°180.0°
C14N5C15C18173.6°85.0°
C14N5C15C2050.7°155.0°
C14N5C15H1568.7°35.0°
N5C14C5C195.2°80.0°
N5C14C5N4145.3°160.0°
N5C14C5H525.4°40.0°
C5C14N5C15179.4°180.0°
C5C14N5HN50.6°0.1°
C14C5C1N4119.9°120.0°
C14C5C1H5120.2°120.0°
C14C5C1C12167.1°175.0°
C14C5C1H11A67.6°55.0°
C14C5C1H1241.8°65.0°
C14C5N4H5120.2°120.0°
C14C5N4S1101.4°95.0°
C14C5N4HN423.8°85.0°
N5C15C18C20120.7°120.1°
N5C15C18H15120.0°120.0°
N5C15C20H15120.1°120.0°
N5C15C18C1960.1°65.0°
N5C15C18H181174.6°55.0°
N5C15C18H18265.1°175.0°
N5C15C20O538.2°0.0°
N5C15C20N6141.0°180.0°
HN5N5C15C186.4°95.0°
HN5N5C15C20129.3°25.0°
HN5N5C15H15111.3°145.0°
C18C15C20H15117.7°120.0°
C15C18C19H181125.3°120.0°
C15C18C19H182125.3°120.0°
C15C18H181H182116.2°120.1°
C15C18C19C2171.7°180.0°
C15C18C19H19163.0°60.0°
C15C18C19H19246.5°60.0°
C18C15C20O584.0°120.0°
C18C15C20N696.8°60.0°
C20C15C18C19179.1°174.9°
C20C15C18H18153.9°65.1°
C20C15C18H18255.6°55.0°
C15C20O5N6179.1°180.0°
C15C20N6C21179.1°180.0°
C15C20N6HN60.9°0.1°
H15C15C18C1959.9°55.0°
H15C15C18H18165.4°175.0°
H15C15C18H182174.9°65.0°
H15C15C20O5158.3°120.1°
H15C15C20N620.9°60.0°
C19C18H181H182116.2°119.9°
C18C19C2H191125.2°120.1°
C18C19C2H192125.3°120.0°
C18C19H191H192119.1°120.0°
C18C19C2O252.2°0.1°
C18C19C2N3123.2°180.0°
H181C18C19C246.5°60.0°
H181C18C19H191171.7°180.0°
H181C18C19H19278.8°60.0°
H182C18C19C263.0°60.0°
H182C18C19H19162.3°60.0°
H182C18C19H192171.8°180.0°
C2C19H191H192119.1°120.0°
C19C2O2N3175.1°179.9°
C19C2N3HN31180.0°0.0°
C19C2N3HN324.6°180.0°
H191C19C2O273.0°120.0°
H191C19C2N3111.5°60.0°
H192C19C2O2177.5°120.0°
H192C19C2N32.1°60.0°
O5C20N6C211.7°0.1°
O5C20N6HN6178.3°180.0°
C20N6C21HN6180.0°179.9°
C20N6C21C25100.1°180.0°
C20N6C21H21125.1°60.1°
C20N6C21H212134.6°60.0°
N6C21C25H211125.3°120.0°
N6C21C25H212125.2°120.0°
N6C21H211H212116.1°120.1°
N6C21C25C1662.4°90.0°
N6C21C25C24117.5°90.3°
HN6N6C21C2579.9°0.1°
HN6N6C21H211154.9°120.0°
HN6N6C21H21245.4°119.9°
C25C21H211H212116.1°119.9°
C21C25C16C17179.3°180.0°
C21C25C16C24179.9°179.7°
C21C25C16H160.7°0.0°
C21C25C24C23179.3°179.7°
C21C25C24H240.6°0.2°
H211C21C25C1662.8°30.0°
H211C21C25C24117.2°149.7°
H212C21C25C16172.3°150.0°
H212C21C25C247.7°29.8°
C17C16C25H16180.0°179.9°
C16C17C22H17180.0°179.9°
C16C17C22C233.0°0.1°
C16C17C22C26176.6°180.0°
C17C16C25C240.8°0.3°
C25C16C17C222.6°0.0°
C25C16C17H17177.4°180.0°
C16C25C24C230.6°0.6°
C16C25C24H24179.4°180.0°
H16C16C17C22177.3°180.0°
H16C16C17H172.6°0.1°
H16C16C25C24179.2°179.8°
C17C22C23C26179.6°179.9°
C17C22C23C241.6°0.3°
C17C22C23H23178.4°180.0°
C17C22C26N114.7°0.1°
C17C22C26N2167.2°180.0°
H17C17C22C23177.0°180.0°
H17C17C22C263.4°0.1°
C22C23C24H23180.0°179.7°
C22C23C24C250.2°0.6°
C22C23C24H24179.8°180.0°
C23C22C26N1165.7°180.0°
C23C22C26N212.4°0.1°
C26C22C23C24178.0°179.8°
C26C22C23H232.0°0.1°
C22C26N1N2178.2°179.9°
C22C26N1HN164.8°180.0°
C22C26N2HN2154.8°0.0°
C22C26N2HN22180.0°179.9°
C23C24C25H24180.0°179.5°
H23C23C24C25179.8°179.8°
H23C23C24H240.2°0.3°
N1C26N2HN21123.4°179.9°
N1C26N2HN221.8°0.0°
N2C26N1HN1113.4°0.0°
C26N2HN21HN22133.5°180.0°
O2C2N3HN314.6°180.0°
O2C2N3HN32180.0°0.0°
C2N3HN31HN32175.4°180.0°
C5C1C12H11A125.3°120.0°
C5C1C12H12125.3°120.0°
C5C1H11AH12117.5°120.0°
C1C5N4H5120.6°120.0°
C1C5N4S1139.4°145.0°
C1C5N4HN495.4°35.0°
C5C1C12C4104.5°84.7°
C5C1C12C1376.8°95.0°
C12C1H11AH12117.5°120.0°
C12C1C5N472.9°65.0°
C12C1C5H546.9°55.0°
C1C12C4C3179.8°179.9°
C1C12C4C110.8°0.7°
C1C12C4C13178.8°179.8°
C1C12C13N7179.1°180.0°
C1C12C13H130.9°0.0°
H11AC1C5N452.3°175.0°
H11AC1C5H5172.2°65.0°
H11AC1C12C420.7°35.3°
H11AC1C12C13157.9°145.0°
H12C1C5N4161.8°55.0°
H12C1C5H578.4°175.0°
H12C1C12C4130.2°155.3°
H12C1C12C1348.5°25.0°
C5N4S1HN4125.2°180.0°
C5N4S1O443.3°178.8°
C5N4S1O3169.6°51.2°
C5N4S1C972.8°65.0°
S1N4C5H518.8°25.0°
N4S1O4O3115.6°114.3°
N4S1O4C9114.6°110.0°
N4S1O3C9115.6°109.9°
N4S1C9C874.4°180.0°
N4S1C9H9150.9°60.0°
N4S1C9H92160.3°60.0°
HN4N4C5H5144.0°155.0°
HN4N4S1O482.0°1.1°
HN4N4S1O344.4°128.8°
HN4N4S1C9162.0°115.0°
O4S1O3C9129.3°135.8°
O4S1C9C8173.7°70.2°
O4S1C9H9161.0°49.7°
O4S1C9H9248.4°169.7°
O3S1C9C839.0°70.3°
O3S1C9H91164.3°169.7°
O3S1C9H9286.2°49.7°
S1C9C8H91125.3°120.0°
S1C9C8H92125.3°120.1°
S1C9H91H92120.6°120.0°
S1C9C8H8154.7°180.0°
S1C9C8H82180.0°59.9°
S1C9C8H8354.8°60.0°
C8C9H91H92120.7°120.0°
C9C8H81H82118.7°120.1°
C9C8H81H83120.7°120.0°
C9C8H82H83125.2°119.9°
H91C9C8H81180.0°60.0°
H91C9C8H8254.7°60.1°
H91C9C8H8370.5°180.0°
H92C9C8H8170.5°59.9°
H92C9C8H8254.8°NaN°
H92C9C8H83180.0°60.1°
H81C8H82H83109.5°120.0°
C7C10C6H10180.0°180.0°
C10C7C3H7180.0°180.0°
C10C7C3C41.0°0.2°
C10C7C3N7178.9°180.0°
C7C10C6C110.8°0.0°
C7C10C6H6179.2°180.0°
C6C10C7C30.4°0.0°
C6C10C7H7179.5°180.0°
C10C6C11C40.3°0.3°
C10C6C11H6180.0°179.9°
C10C6C11H11179.7°180.0°
H10C10C7C3179.6°180.0°
H10C10C7H70.4°0.0°
H10C10C6C11179.2°179.9°
H10C10C6H60.8°0.0°
C7C3C4N7179.9°179.8°
C7C3C4C112.1°0.5°
C7C3C4C12178.8°179.8°
C7C3N7C13178.9°180.0°
C7C3N7HN71.1°0.0°
H7C7C3C4179.0°179.7°
H7C7C3N71.1°0.0°
C3C4C11C12178.8°179.1°
C3C4C11C61.8°0.6°
C3C4C11H11178.2°179.7°
C4C3N7C131.2°0.2°
C4C3N7HN7178.8°179.8°
C3C4C12C130.9°0.3°
N7C3C4C11177.8°179.6°
N7C3C4C121.3°0.3°
C3N7C13HN7180.0°180.0°
C3N7C13C120.6°0.0°
C3N7C13H13179.4°180.0°
C4C11C6H11180.0°179.7°
C4C11C6H6179.7°179.7°
C11C4C12C13178.0°179.5°
C12C4C11C6179.4°179.7°
C12C4C11H110.6°0.6°
C4C12C13N70.2°0.2°
C4C12C13H13179.8°179.8°
H11C11C6H60.3°0.0°
N7C13C12H13180.0°180.0°
HN7N7C13C12179.4°180.0°
HN7N7C13H130.6°0.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon