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SummaryGeometryRelated PDB entries

P4J

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C06N02sing1.37Å1.34ÅAromatic
C06C04doub1.36Å1.39ÅAromatic
N02C08doub1.32Å1.32ÅAromatic
C04N03sing1.37Å1.35ÅAromatic
C08N03sing1.36Å1.31ÅAromatic
N03C01sing1.45Å1.47Å
O05V01sing1.63Å1.94Å
O03C01sing1.41Å1.26Å
O03C05sing1.44Å1.56Å
C01C02sing1.53Å1.58Å
O17V05sing1.63Å1.82Å
O06V01sing1.63Å1.74Å
V01O07sing1.64Å1.74Å
V01O04sing1.64Å1.66Å
O18V05sing1.63Å1.85Å
V05O01sing1.65Å1.85Å
V05O19sing1.64Å1.83Å
C02O01sing1.43Å1.35Å
C02C03sing1.52Å1.59Å
O07V06sing1.63Å1.86Å
C05C07sing1.48Å1.47Å
C05C03sing1.55Å1.45Å
O04C07sing1.44Å1.41Å
O20V06sing1.63Å1.81Å
C03O02sing1.42Å1.60Å
V06O22sing1.63Å1.80Å
V06O21sing1.63Å1.84Å
O02V02sing1.65Å2.04Å
O08V02sing1.64Å1.70Å
V02O09sing1.63Å1.91Å
V02O10sing1.64Å1.64Å
O12V03sing1.63Å1.89Å
O10V03sing1.63Å1.69Å
V03O11sing1.63Å1.64Å
V03O13sing1.63Å1.67Å
O13V04sing1.63Å1.85Å
O16V04sing1.63Å1.79Å
O14V04sing1.63Å1.95Å
V04O15sing1.63Å1.80Å
C01H1sing0.98Å1.10Å
C02H2sing0.98Å1.10Å
C03H3sing0.98Å1.10Å
C05H4sing0.99Å1.10Å
C06H5sing0.94Å1.08Å
C07H6sing0.99Å1.10Å
C07H7sing0.99Å1.10Å
C08H8sing0.94Å1.08Å
C04H9sing0.95Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N02C06C04107.5°110.6°
C06N02C08107.6°105.2°
N02C06H5126.3°124.8°
C06C04N03105.9°106.1°
C04C06H5126.3°124.7°
C06C04H9127.0°127.4°
N02C08N03110.5°111.8°
N02C08H8124.7°124.3°
C04N03C08108.4°106.3°
C04N03C01129.9°127.4°
N03C04H9127.0°126.5°
C08N03C01121.7°126.2°
N03C08H8124.8°123.9°
N03C01O03102.8°109.4°
N03C01C02122.8°114.4°
N03C01H1109.4°108.7°
O05V01O06106.8°79.1°
O05V01O07127.0°131.2°
O05V01O04109.4°81.3°
C01O03C05105.2°112.4°
O03C01C02100.3°106.5°
O03C01H1113.0°108.9°
O03C05C07105.2°107.8°
O03C05C03106.4°102.9°
O03C05H4107.7°109.1°
C01C02O01115.9°110.4°
C01C02C03102.3°103.5°
C02C01H1108.1°108.9°
C01C02H2105.2°110.7°
O17V05O18110.1°108.9°
O17V05O01117.0°110.2°
O17V05O19107.2°109.5°
O06V01O07104.6°79.2°
O06V01O04106.5°132.1°
O07V01O04100.9°81.8°
V01O07V06105.6°138.3°
V01O04C07124.9°112.1°
O18V05O01123.3°108.9°
O18V05O19108.8°108.8°
O01V05O1986.2°110.5°
V05O01C02109.6°115.3°
O01C02C03119.4°114.7°
O01C02H2107.8°106.5°
C02C03C05100.2°102.8°
C02C03O02120.6°114.5°
C03C02H2105.1°111.1°
C02C03H3103.8°111.1°
O07V06O2093.4°109.5°
O07V06O22107.8°109.5°
O07V06O21123.3°109.4°
C07C05C03118.8°121.7°
C05C07O04118.0°109.4°
C07C05H4108.9°106.3°
C05C07H6107.3°109.7°
C05C07H7107.3°109.4°
C05C03O02121.3°113.1°
C05C03H3105.2°111.7°
C03C05H4109.2°108.6°
O04C07H6107.3°109.7°
O04C07H7107.3°109.7°
O20V06O22106.8°109.5°
O20V06O21110.9°109.5°
C03O02V02123.3°115.4°
O02C03H3103.7°103.9°
O22V06O21112.2°109.5°
O02V02O08109.3°110.2°
O02V02O09122.8°108.9°
O02V02O10126.1°110.5°
O08V02O0998.5°108.9°
O08V02O10105.2°109.6°
O09V02O1090.5°108.9°
V02O10V03122.0°141.5°
O12V03O10120.3°109.5°
O12V03O1199.9°109.5°
O12V03O13113.8°109.4°
O10V03O11108.8°109.5°
O10V03O13100.0°109.4°
O11V03O13114.9°109.5°
V03O13V04112.5°143.5°
O13V04O16110.6°109.5°
O13V04O1491.8°109.5°
O13V04O15115.6°109.5°
O16V04O14108.6°109.4°
O16V04O15116.0°109.5°
O14V04O15111.6°109.5°
H6C07H7109.5°108.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N02C06C04H5180.0°180.0°
N02C06C04N030.1°0.0°
C06N02C08N030.1°0.0°
C06N02C08H8179.9°180.0°
N02C06C04H9179.9°180.0°
C04C06N02C080.0°0.0°
C06C04N03H9180.0°180.0°
C06C04N03C080.2°0.0°
C06C04N03C01179.4°180.0°
N02C08N03C040.2°0.0°
N02C08N03H8180.0°180.0°
N02C08N03C01179.5°180.0°
C08N02C06H5180.0°180.0°
C04N03C08C01179.3°180.0°
C04N03C01O0378.7°41.4°
C04N03C01C0232.7°78.0°
C04N03C01H1161.0°160.1°
N03C04C06H5179.9°180.0°
C04N03C08H8179.8°180.0°
C08N03C01O03100.5°138.6°
C08N03C01C02148.1°102.1°
C08N03C01H119.8°19.8°
C08N03C04H9179.8°180.0°
N03C01O03C02127.3°124.1°
N03C01O03H1117.9°118.6°
N03C01O03C05177.2°124.0°
N03C01C02H1128.9°121.8°
N03C01C02O0170.2°94.7°
N03C01C02C03158.2°142.1°
N03C01C02H248.7°23.0°
C01N03C08H80.5°0.0°
C01N03C04H90.6°0.1°
O05V01O06O07136.8°136.0°
O05V01O06O04116.9°67.6°
O05V01O07O04124.7°70.8°
O05V01O07V06173.7°155.1°
O05V01O04C0726.0°114.1°
O03C01C02H1118.5°117.2°
O03C01C02O01177.2°144.3°
O03C01C02C0345.6°21.1°
C01O03C05C0787.9°150.7°
C01O03C05C0339.0°20.8°
O03C01C02H264.0°98.0°
C01O03C05H4156.1°94.4°
C05O03C01C0249.9°0.2°
O03C05C03C026.4°32.8°
O03C05C07C03118.9°118.3°
O03C05C07H4115.2°116.8°
O03C05C03H4116.0°115.6°
O03C05C07O0497.8°72.0°
O03C05C03O02142.0°91.2°
C05O03C01H164.9°117.4°
O03C05C03H3101.1°152.0°
O03C05C07H623.4°167.6°
O03C05C07H7140.9°48.2°
C01C02O01V05119.4°134.2°
C01C02O01C03123.0°116.4°
C01C02O01H2117.5°120.3°
C01C02C03H2109.7°118.9°
C01C02C03C0519.9°32.7°
C01C02C03O02116.1°90.4°
C01C02C03H3128.5°152.3°
O17V05O18O01144.9°120.2°
O17V05O18O19117.1°119.3°
O17V05O01O19107.3°121.2°
O17V05O01C024.8°63.0°
O06V01O07O04110.4°135.8°
O06V01O07V0661.4°90.1°
O06V01O04C07141.2°179.3°
O07V01O04C07109.9°111.9°
V01O07V06O2078.6°69.7°
V01O07V06O22172.6°170.3°
V01O07V06O2139.3°50.3°
O04V01O07V0649.0°134.1°
V01O04C07C0545.5°134.9°
V01O04C07H675.7°104.8°
V01O04C07H7166.7°14.8°
O18V05O01O19110.0°119.5°
O18V05O01C02147.5°177.7°
V05O01C02C03117.6°109.3°
V05O01C02H21.9°13.9°
O19V05O01C02102.6°58.2°
O01C02C03H2120.9°120.8°
O01C02C03C05149.3°153.1°
O01C02C03O0213.4°29.9°
O01C02C01H158.7°27.1°
O01C02C03H3102.0°87.4°
C02C03C05C07111.8°153.5°
C02C03C05O02135.5°124.0°
C02C03C05H3107.5°119.2°
C02C03O02H3115.5°121.4°
C02C03O02V02114.7°126.1°
C03C02C01H172.9°96.1°
C02C03C05H4122.5°82.8°
O07V06O20O22109.7°120.1°
O07V06O20O21127.7°119.9°
O07V06O22O21139.0°120.0°
C07C05C03H4125.7°123.8°
C05C07O04H6121.2°120.3°
C05C07O04H7121.2°120.1°
C07C05C03O0223.7°29.4°
C07C05C03H3140.6°87.4°
C05C07H6H7116.2°119.7°
C03C05C07O04143.2°169.7°
C05C03O02H3117.7°121.3°
C05C03O02V02118.4°116.5°
C05C03C02H289.8°86.2°
C03C05C07H695.6°49.3°
C03C05C07H722.0°70.1°
O04C07C05H417.4°44.8°
O04C07H6H7116.1°120.1°
O20V06O22O21121.7°120.0°
C03O02V02O080.1°62.3°
C03O02V02O09114.4°178.4°
C03O02V02O10126.8°58.9°
O02C03C02H2134.3°150.7°
O02C03C05H4102.0°153.2°
O02V02O08O09129.3°119.3°
O02V02O08O10137.9°121.7°
O02V02O09O10135.0°120.5°
O02V02O10V03106.7°152.8°
V02O02C03H30.7°4.8°
O08V02O09O10105.5°119.4°
O08V02O10V0321.8°85.6°
O09V02O10V03120.7°33.4°
V02O10V03O1244.3°142.9°
V02O10V03O1169.7°97.1°
V02O10V03O13169.5°22.9°
O12V03O10O11114.1°120.0°
O12V03O10O13125.2°120.0°
O12V03O11O13122.1°120.0°
O12V03O13V04162.1°124.4°
O10V03O11O13111.1°120.0°
O10V03O13V0432.6°115.7°
O11V03O13V0483.7°4.4°
V03O13V04O1670.4°136.7°
V03O13V04O1440.2°16.7°
V03O13V04O15155.2°103.4°
O13V04O16O1499.3°120.0°
O13V04O16O15134.1°120.0°
O13V04O14O15118.5°120.0°
O16V04O14O15129.1°120.0°
H1C01C02H2177.5°144.8°
H2C02C03H318.9°33.4°
H3C03C05H415.0°36.4°
H4C05C07H6138.6°75.5°
H4C05C07H7103.8°165.1°
H5C06C04H90.1°0.0°

258735

PDB entries from 2026-08-26

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