Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

P39

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C19C18doub1.38Å1.44ÅAromatic
C18C17sing1.38Å1.43ÅAromatic
C18H18sing1.08Å1.08Å
C17C16doub1.38Å1.45ÅAromatic
C17H17sing1.08Å1.08Å
C21C16sing1.38Å1.43ÅAromatic
C16C14sing1.51Å1.43Å
C15C14sing1.53Å1.48Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
C15H15Bsing1.09Å1.10Å
C19C20sing1.38Å1.42ÅAromatic
C19H19sing1.08Å1.08Å
C20C21doub1.38Å1.39ÅAromatic
C20H20sing1.08Å1.08Å
C21H21sing1.08Å1.08Å
N22C23sing1.40Å1.39Å
C23C24doub1.39Å1.40ÅAromatic
C23C28sing1.39Å1.38ÅAromatic
C29C24sing1.51Å1.53Å
C24C25sing1.38Å1.44ÅAromatic
N13C11sing1.35Å1.33Å
C11O12doub1.22Å1.27Å
C11C8sing1.47Å1.46Å
C33C34doub1.39Å1.47ÅAromatic
C34C35sing1.39Å1.34ÅAromatic
C34H34sing1.08Å1.08Å
C28C27doub1.39Å1.44ÅAromatic
C27C26sing1.39Å1.44ÅAromatic
C27N30sing1.40Å1.39Å
C31C33sing1.48Å1.53Å
C33C38sing1.40Å1.38ÅAromatic
C9N1sing1.34Å1.35ÅAromatic
N1N2sing1.40Å1.32ÅAromatic
N1C6sing1.38Å1.41ÅAromatic
N2C3doub1.30Å1.37ÅAromatic
C3N4sing1.33Å1.38ÅAromatic
C3H3sing1.08Å1.08Å
C5N4doub1.32Å1.28ÅAromatic
C6C5sing1.42Å1.43ÅAromatic
C5N22sing1.38Å1.40Å
C7C6doub1.38Å1.46ÅAromatic
C8C7sing1.41Å1.46ÅAromatic
C7C10sing1.51Å1.63Å
C9C8doub1.39Å1.47ÅAromatic
C9H9sing1.08Å1.08Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C10H10Bsing1.09Å1.10Å
C14N13sing1.47Å1.41Å
N13HN13sing0.97Å1.00Å
C14H14sing1.09Å1.10Å
N22HN22sing0.97Å1.00Å
C25C26doub1.38Å1.43ÅAromatic
C25H25sing1.08Å1.08Å
C26H26sing1.08Å1.08Å
C28H28sing1.08Å1.08Å
C29H29sing1.09Å1.10Å
C29H29Asing1.09Å1.10Å
C29H29Bsing1.09Å1.10Å
N30C31sing1.35Å1.33Å
N30HN30sing0.97Å1.00Å
O32C31doub1.22Å1.21Å
C35C36doub1.39Å1.33ÅAromatic
C35N39sing1.40Å1.37Å
C37C36sing1.38Å1.32ÅAromatic
C36H36sing1.08Å1.08Å
C38C37doub1.38Å1.36ÅAromatic
C37H37sing1.08Å1.08Å
C38H38sing1.08Å1.08Å
C40N39sing1.47Å1.41Å
N39C44sing1.47Å1.50Å
C40C41sing1.53Å1.57Å
C40H40sing1.09Å1.10Å
C40H40Asing1.09Å1.10Å
C41O42sing1.43Å1.42Å
C41H41sing1.09Å1.10Å
C41H41Asing1.09Å1.10Å
O42C43sing1.43Å1.43Å
C44C43sing1.53Å1.58Å
C43H43sing1.09Å1.10Å
C43H43Asing1.09Å1.10Å
C44H44sing1.09Å1.10Å
C44H44Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C19C18C17121.8°120.0°
C19C18H18119.1°120.0°
C18C19C20122.9°120.0°
C18C19H19118.6°120.0°
C17C18H18119.1°120.0°
C18C17C16113.7°120.0°
C18C17H17123.1°120.0°
C16C17H17123.2°119.9°
C17C16C21123.7°120.0°
C17C16C14118.9°120.0°
C21C16C14117.5°120.0°
C16C21C20121.9°120.0°
C16C21H21119.1°120.0°
C16C14C1599.0°109.5°
C16C14N13102.2°109.4°
C16C14H14122.5°109.5°
C14C15H15109.5°109.4°
C14C15H15A109.5°109.5°
C14C15H15B109.5°109.5°
C15C14N13116.1°109.5°
C15C14H14110.1°109.5°
H15C15H15A109.4°109.5°
H15C15H15B109.4°109.5°
H15AC15H15B109.5°109.4°
C20C19H19118.6°120.0°
C19C20C21116.1°120.0°
C19C20H20121.9°120.0°
C21C20H20122.0°120.0°
C20C21H21119.1°120.0°
N22C23C24118.2°120.0°
N22C23C28121.5°120.0°
C23N22C5123.8°120.0°
C23N22HN22118.1°120.0°
C24C23C28120.3°119.9°
C23C24C29119.6°120.0°
C23C24C25116.8°120.1°
C23C28C27126.3°119.9°
C23C28H28116.8°120.1°
C29C24C25123.5°120.0°
C24C29H29109.5°109.5°
C24C29H29A109.5°109.5°
C24C29H29B109.4°109.5°
C24C25C26122.5°120.2°
C24C25H25118.8°119.9°
N13C11O12119.2°120.0°
N13C11C8115.7°120.0°
C11N13C14111.1°120.0°
C11N13HN13124.4°120.0°
O12C11C8124.6°120.0°
C11C8C7126.3°126.4°
C11C8C9124.7°126.4°
C33C34C35121.0°119.8°
C33C34H34119.5°120.1°
C34C33C31120.3°120.1°
C34C33C38118.0°119.7°
C35C34H34119.6°120.1°
C34C35C36113.8°120.0°
C34C35N39123.5°120.0°
C28C27C26113.2°119.9°
C28C27N30127.1°120.0°
C27C28H28116.9°120.1°
C26C27N30119.7°120.1°
C27C26C25120.8°120.1°
C27C26H26119.6°119.9°
C27N30C31120.2°120.0°
C27N30HN30119.9°120.0°
C31C33C38121.7°120.2°
C33C31N30121.6°120.0°
C33C31O32113.0°120.0°
C33C38C37119.7°120.0°
C33C38H38120.1°120.0°
C9N1N2133.7°132.8°
C9N1C6109.1°109.0°
N1C9C8108.3°108.8°
N1C9H9125.8°125.6°
N2N1C6117.3°118.2°
N1N2C3125.9°120.1°
N1C6C5114.0°118.5°
N1C6C7111.3°108.2°
N2C3N4118.7°122.3°
N2C3H3120.7°118.8°
N4C3H3120.7°118.8°
C3N4C5115.9°121.6°
N4C5C6128.2°119.2°
N4C5N22110.0°120.4°
C6C5N22121.8°120.4°
C5C6C7134.7°133.4°
C5N22HN22118.1°120.0°
C6C7C8102.4°106.8°
C6C7C10130.4°126.6°
C8C7C10127.3°126.6°
C7C8C9108.9°107.2°
C7C10H10109.5°109.5°
C7C10H10A109.5°109.4°
C7C10H10B109.4°109.4°
C8C9H9125.8°125.6°
H10C10H10A109.5°109.5°
H10C10H10B109.4°109.5°
H10AC10H10B109.5°109.5°
C14N13HN13124.4°120.0°
N13C14H14107.2°109.5°
C26C25H25118.7°119.9°
C25C26H26119.6°120.0°
H29C29H29A109.5°109.5°
H29C29H29B109.5°109.4°
H29AC29H29B109.5°109.5°
C31N30HN30119.9°120.0°
N30C31O32125.3°120.0°
C36C35N39122.6°120.0°
C35C36C37131.3°120.3°
C35C36H36114.3°119.8°
C35N39C40115.9°111.0°
C35N39C44122.2°111.0°
C37C36H36114.3°119.9°
C36C37C38116.2°120.2°
C36C37H37121.9°119.9°
C38C37H37121.9°119.9°
C37C38H38120.2°120.0°
C40N39C44121.6°110.7°
N39C40C41111.2°109.3°
N39C40H40108.9°109.5°
N39C40H40A108.5°109.5°
N39C44C43113.9°109.2°
N39C44H44108.0°109.5°
N39C44H44A107.0°109.6°
C41C40H40108.9°109.5°
C41C40H40A108.5°109.5°
C40C41O42121.6°109.3°
C40C41H41105.6°109.5°
C40C41H41A102.8°109.5°
H40C40H40A110.8°109.5°
O42C41H41105.6°109.5°
O42C41H41A102.8°109.5°
C41O42C43119.4°113.8°
H41C41H41A119.6°109.5°
O42C43C44101.1°109.3°
O42C43H43112.4°109.5°
O42C43H43A114.1°109.5°
C44C43H43112.3°109.5°
C44C43H43A114.1°109.6°
C43C44H44108.0°109.5°
C43C44H44A107.0°109.5°
H43C43H43A103.2°109.4°
H44C44H44A113.0°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C19C18C17H18180.0°179.7°
C19C18C17C160.2°0.3°
C19C18C17H17179.8°179.7°
C18C19C20H19180.0°180.0°
C18C19C20C210.6°0.5°
C18C19C20H20179.3°180.0°
C18C17C16H17180.0°180.0°
C18C17C16C210.7°0.0°
C18C17C16C14178.4°180.0°
C17C18C19C200.5°0.0°
C17C18C19H19179.5°180.0°
H18C18C17C16179.8°180.0°
H18C18C17H170.2°0.0°
H18C18C19C20179.5°179.7°
H18C18C19H190.5°0.3°
C17C16C21C14179.2°179.9°
C17C16C14C1582.3°100.0°
C17C16C21C200.6°0.6°
C17C16C21H21179.4°179.8°
C17C16C14N13158.4°140.0°
C17C16C14H1438.6°20.0°
H17C17C16C21179.2°180.0°
H17C17C16C141.6°0.0°
C21C16C14C1596.9°79.9°
C16C21C20C190.1°0.8°
C16C21C20H21180.0°179.2°
C16C21C20H20179.9°179.7°
C21C16C14N1322.4°40.0°
C21C16C14H14142.2°160.0°
C16C14C15N13108.4°120.0°
C16C14C15H14129.5°120.0°
C16C14C15H151.1°60.0°
C16C14C15H15A118.9°180.0°
C16C14C15H15B121.1°60.0°
C14C16C21C20178.5°179.5°
C14C16C21H211.4°0.3°
C16C14N13C11112.1°155.0°
C16C14N13H14130.0°120.0°
C16C14N13HN1367.9°25.1°
C14C15H15H15A120.0°120.0°
C14C15H15H15B120.0°120.0°
C14C15H15AH15B120.0°120.0°
C15C14N13C11141.4°85.0°
C15C14N13H14123.5°120.0°
C15C14N13HN1338.6°94.9°
H15C15H15AH15B120.0°120.0°
H15C15C14N13107.3°180.0°
H15C15C14H14130.6°60.0°
H15AC15C14N13132.7°60.0°
H15AC15C14H1410.7°60.0°
H15BC15C14N1312.6°60.0°
H15BC15C14H14109.4°180.0°
C19C20C21H20180.0°179.4°
C19C20C21H21179.9°180.0°
H19C19C20C21179.4°179.5°
H19C19C20H200.7°0.0°
H20C20C21H210.1°0.5°
N22C23C24C28179.7°179.7°
N22C23C24C291.0°0.3°
N22C23C24C25180.0°179.7°
N22C23C28C27179.4°179.7°
C23N22C5N44.9°2.8°
C23N22C5C6175.7°177.2°
C23N22C5HN22180.0°179.9°
N22C23C28H280.6°0.2°
C23C24C29C25179.0°180.0°
C24C23C28C270.9°0.1°
C24C23N22C5102.0°145.0°
C24C23N22HN2278.0°34.9°
C23C24C25C260.0°0.0°
C23C24C25H25180.0°180.0°
C24C23C28H28179.0°180.0°
C23C24C29H29163.2°90.0°
C23C24C29H29A43.2°150.0°
C23C24C29H29B76.8°30.0°
C28C23C24C29178.7°180.0°
C28C23C24C250.3°0.0°
C23C28C27H28180.0°179.9°
C23C28C27C261.1°0.1°
C23C28C27N30179.7°179.9°
C28C23N22C577.7°34.7°
C28C23N22HN22102.3°145.4°
C29C24C25C26179.0°180.0°
C29C24C25H251.0°0.0°
C24C29H29H29A120.0°120.0°
C24C29H29H29B120.0°120.0°
C24C29H29AH29B120.0°120.0°
C24C25C26C270.3°0.0°
C24C25C26H25180.0°179.9°
C24C25C26H26179.7°180.0°
C25C24C29H2917.8°90.0°
C25C24C29H29A137.8°30.0°
C25C24C29H29B102.1°150.0°
N13C11O12C8171.2°180.0°
N13C11C8C7179.2°180.0°
N13C11C8C95.0°0.3°
C11N13C14HN13180.0°179.9°
C11N13C14H1417.9°35.0°
O12C11C8C79.3°0.0°
O12C11C8C9166.5°179.7°
O12C11N13C1415.2°0.0°
O12C11N13HN13164.8°179.9°
C11C8C9N1175.9°179.9°
C11C8C7C6175.5°180.0°
C11C8C7C9176.3°179.7°
C11C8C7C102.9°0.0°
C11C8C9H94.2°0.0°
C8C11N13C14172.8°180.0°
C8C11N13HN137.2°0.1°
C33C34C35H34180.0°179.7°
C34C33C31C38179.3°179.9°
C34C33C31N30156.2°180.0°
C34C33C31O3225.6°0.1°
C33C34C35C361.3°0.3°
C33C34C35N39178.4°179.7°
C34C33C38C372.4°0.4°
C34C33C38H38177.7°180.0°
C35C34C33C31178.3°180.0°
C35C34C33C382.4°0.1°
C34C35C36N39177.2°180.0°
C34C35C36C370.3°0.0°
C34C35C36H36179.7°180.0°
C34C35N39C407.8°56.4°
C34C35N39C44165.3°180.0°
H34C34C33C311.8°0.3°
H34C34C33C38177.6°179.8°
H34C34C35C36178.7°180.0°
H34C34C35N391.6°0.0°
C28C27C26N30179.3°180.0°
C28C27C26C250.7°0.0°
C28C27C26H26179.3°180.0°
C28C27N30C3122.7°148.2°
C28C27N30HN30157.3°31.8°
C27C26C25H26180.0°180.0°
C27C26C25H25179.7°180.0°
C26C27C28H28178.9°180.0°
C26C27N30C31158.1°31.8°
C26C27N30HN3021.9°148.2°
C27N30C31C33178.9°174.7°
N30C27C26C25180.0°180.0°
N30C27C26H260.0°0.0°
N30C27C28H280.4°0.0°
C27N30C31HN30180.0°180.0°
C27N30C31O321.0°5.3°
C33C31N30O32177.9°180.0°
C33C31N30HN301.1°5.3°
C31C33C38C37178.3°179.5°
C31C33C38H381.7°0.1°
C38C33C31N3024.4°0.1°
C38C33C31O32153.7°180.0°
C33C38C37C361.4°0.7°
C33C38C37H38180.0°179.6°
C33C38C37H37178.7°179.9°
C9N1N2C6179.4°179.7°
C9N1N2C3179.6°179.7°
C9N1C6C5178.8°179.8°
C9N1C6C70.5°0.2°
N1C9C8C70.6°0.4°
N1C9C8H9180.0°179.9°
N1N2C3N40.2°0.0°
N1N2C3H3179.9°180.0°
N2N1C6C50.7°0.0°
N2N1C6C7179.9°180.0°
N2N1C9C8179.4°179.9°
N2N1C9H90.6°0.0°
C6N1N2C30.2°0.0°
N1C6C5N41.9°0.0°
N1C6C5C7179.2°180.0°
N1C6C5N22178.8°179.9°
N1C6C7C80.8°0.0°
N1C6C7C10179.2°180.0°
C6N1C9C80.0°0.4°
C6N1C9H9180.0°179.7°
N2C3N4H3180.0°180.0°
N2C3N4C50.8°0.0°
C3N4C5C62.0°0.0°
C3N4C5N22178.7°179.9°
H3C3N4C5179.2°180.0°
N4C5C6N22179.3°179.9°
N4C5C6C7178.9°180.0°
N4C5N22HN22175.1°177.2°
C5C6C7C8178.3°180.0°
C5C6C7C100.1°0.0°
C6C5N22HN224.3°2.7°
N22C5C6C70.4°0.1°
C6C7C8C10178.5°180.0°
C6C7C8C90.8°0.3°
C6C7C10H1014.6°82.5°
C6C7C10H10A134.6°157.5°
C6C7C10H10B105.4°37.5°
C7C8C9H9179.4°179.7°
C8C7C10H10167.4°97.5°
C8C7C10H10A47.4°22.5°
C8C7C10H10B72.6°142.5°
C10C7C8C9179.3°179.8°
C7C10H10H10A120.0°120.0°
C7C10H10H10B120.0°119.9°
C7C10H10AH10B120.0°120.0°
H10C10H10AH10B120.0°120.0°
HN13N13C14H14162.1°145.1°
H25C25C26H260.3°0.1°
H29C29H29AH29B120.0°119.9°
HN30N30C31O32179.1°174.7°
C35C36C37H36180.0°180.0°
C35C36C37C380.3°0.5°
C35C36C37H37179.8°179.9°
C36C35N39C40175.3°123.6°
C36C35N39C4411.6°0.0°
N39C35C36C37177.4°180.0°
N39C35C36H362.6°0.0°
C35N39C40C44173.2°123.8°
C35N39C40C41178.6°177.6°
C35N39C40H4058.6°62.4°
C35N39C40H40A62.1°57.7°
C35N39C44C43149.1°177.6°
C35N39C44H4429.1°57.7°
C35N39C44H44A92.9°62.5°
C36C37C38H37180.0°179.4°
C36C37C38H38178.7°179.7°
H36C36C37C38179.7°179.5°
H36C36C37H370.3°0.1°
H37C37C38H381.3°0.3°
N39C40C41H40120.0°120.0°
N39C40C41H40A119.3°120.0°
N39C40H40H40A119.3°120.1°
N39C40C41O421.2°56.8°
N39C40C41H41118.8°176.8°
N39C40C41H41A115.1°63.1°
C40N39C44C4338.2°58.6°
C40N39C44H44158.2°178.5°
C40N39C44H44A79.9°61.3°
C44N39C40C415.4°58.6°
C44N39C40H40114.6°61.3°
C44N39C40H40A124.7°178.6°
N39C44C43O4260.0°56.9°
N39C44C43H44120.0°119.9°
N39C44C43H44A118.1°120.0°
N39C44C43H43180.0°176.8°
N39C44C43H43A62.9°63.1°
N39C44H44H44A118.2°120.2°
C41C40H40H40A119.3°120.1°
C40C41O42H41120.0°120.0°
C40C41O42H41A114.0°119.9°
C40C41H41H41A115.0°120.1°
C40C41O42C4329.4°58.6°
H40C40C41O42121.2°63.1°
H40C40C41H411.3°56.8°
H40C40C41H41A124.8°177.0°
H40AC40C41O42118.1°176.8°
H40AC40C41H41121.9°63.3°
H40AC40C41H41A4.2°56.9°
O42C41H41H41A115.0°120.1°
C41O42C43C4456.2°58.7°
C41O42C43H43176.2°178.6°
C41O42C43H43A66.7°61.3°
H41C41O42C43149.4°178.6°
H41AC41O42C4384.6°61.3°
O42C43C44H43120.0°120.0°
O42C43C44H43A122.9°120.0°
O42C43H43H43A123.4°120.1°
O42C43C44H44180.0°176.8°
O42C43C44H44A58.0°63.1°
C44C43H43H43A123.4°120.1°
C43C44H44H44A118.2°120.1°
H43C43C44H4460.0°63.3°
H43C43C44H44A61.9°56.9°
H43AC43C44H4457.1°56.8°
H43AC43C44H44A179.0°176.9°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon