P2Y
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| NA | C | sing | 1.47Å | 1.37Å | |
| NA | HNA1 | sing | 1.01Å | 1.02Å | |
| NA | HNA2 | sing | 1.01Å | 1.02Å | |
| C | CA | sing | 1.53Å | 1.50Å | |
| C | H1 | sing | 1.09Å | 1.12Å | |
| C | H2 | sing | 1.09Å | 1.11Å | |
| CA | N | sing | 1.48Å | 1.45Å | |
| CA | CB | sing | 1.54Å | 1.49Å | |
| CA | HA | sing | 1.09Å | 1.12Å | |
| N | CD | sing | 1.49Å | 1.46Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| CD | CG | sing | 1.54Å | 1.50Å | |
| CD | HD3 | sing | 1.09Å | 1.12Å | |
| CD | HD2 | sing | 1.09Å | 1.12Å | |
| CG | CB | sing | 1.54Å | 1.47Å | |
| CG | HG3 | sing | 1.09Å | 1.12Å | |
| CG | HG2 | sing | 1.09Å | 1.11Å | |
| CB | HB2 | sing | 1.09Å | 1.11Å | |
| CB | HB3 | sing | 1.09Å | 1.12Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C | NA | HNA1 | 123.1° | 106.8° |
| C | NA | HNA2 | 107.3° | 106.7° |
| NA | C | CA | 123.1° | 109.5° |
| NA | C | H1 | 107.4° | 109.4° |
| NA | C | H2 | 107.4° | 109.4° |
| HNA1 | NA | HNA2 | 107.5° | 106.7° |
| CA | C | H1 | 107.3° | 109.5° |
| CA | C | H2 | 107.4° | 109.5° |
| C | CA | N | 116.4° | 110.4° |
| C | CA | CB | 111.1° | 110.4° |
| C | CA | HA | 102.0° | 110.3° |
| H1 | C | H2 | 102.4° | 109.5° |
| N | CA | CB | 104.8° | 104.7° |
| N | CA | HA | 108.7° | 110.4° |
| CA | N | CD | 109.5° | 104.1° |
| CA | N | H | 112.2° | 106.9° |
| CB | CA | HA | 114.2° | 110.5° |
| CA | CB | CG | 103.2° | 105.0° |
| CA | CB | HB2 | 114.6° | 110.4° |
| CA | CB | HB3 | 114.6° | 110.3° |
| CD | N | H | 112.2° | 106.7° |
| N | CD | CG | 102.0° | 104.7° |
| N | CD | HD3 | 115.0° | 110.4° |
| N | CD | HD2 | 115.1° | 110.3° |
| CG | CD | HD3 | 115.1° | 110.4° |
| CG | CD | HD2 | 115.1° | 110.4° |
| CD | CG | CB | 102.2° | 105.1° |
| CD | CG | HG3 | 114.9° | 110.3° |
| CD | CG | HG2 | 115.0° | 110.3° |
| HD3 | CD | HD2 | 95.4° | 110.5° |
| CB | CG | HG3 | 115.0° | 110.3° |
| CB | CG | HG2 | 115.0° | 110.4° |
| CG | CB | HB2 | 114.6° | 110.4° |
| CG | CB | HB3 | 114.6° | 110.3° |
| HG3 | CG | HG2 | 95.5° | 110.3° |
| HB2 | CB | HB3 | 95.9° | 110.3° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C | NA | HNA1 | HNA2 | 125.3° | 113.9° |
| NA | C | CA | H1 | 125.3° | 120.0° |
| NA | C | CA | H2 | 125.3° | 120.0° |
| NA | C | H1 | H2 | 112.9° | 119.9° |
| NA | C | CA | N | 24.0° | 63.0° |
| NA | C | CA | CB | 95.8° | 178.4° |
| NA | C | CA | HA | 142.1° | 59.3° |
| HNA1 | NA | C | CA | 180.0° | 180.0° |
| HNA1 | NA | C | H1 | 54.7° | 60.0° |
| HNA1 | NA | C | H2 | 54.8° | 60.0° |
| HNA2 | NA | C | CA | 54.7° | 66.1° |
| HNA2 | NA | C | H1 | 179.9° | 173.8° |
| HNA2 | NA | C | H2 | 70.6° | 53.9° |
| CA | C | H1 | H2 | 112.9° | 120.0° |
| C | CA | N | CB | 123.1° | 118.8° |
| C | CA | N | HA | 114.4° | 122.3° |
| C | CA | CB | HA | 114.8° | 122.3° |
| C | CA | N | CD | 120.3° | 158.2° |
| C | CA | N | H | 5.0° | 89.1° |
| C | CA | CB | CG | 98.7° | 142.7° |
| C | CA | CB | HB2 | 26.6° | 23.7° |
| C | CA | CB | HB3 | 136.1° | 98.5° |
| H1 | C | CA | N | 149.2° | 177.0° |
| H1 | C | CA | CB | 29.5° | 61.6° |
| H1 | C | CA | HA | 92.7° | 60.7° |
| H2 | C | CA | N | 101.3° | 57.0° |
| H2 | C | CA | CB | 138.9° | 58.4° |
| H2 | C | CA | HA | 16.8° | 179.3° |
| N | CA | CB | HA | 118.8° | 118.8° |
| CA | N | CD | H | 125.3° | 112.8° |
| CA | N | CD | CG | 22.7° | 39.3° |
| CA | N | CD | HD3 | 102.5° | 158.1° |
| CA | N | CD | HD2 | 148.0° | 79.5° |
| N | CA | CB | CG | 27.8° | 23.8° |
| N | CA | CB | HB2 | 153.1° | 95.1° |
| N | CA | CB | HB3 | 97.4° | 142.7° |
| CB | CA | N | CD | 2.8° | 39.3° |
| CB | CA | N | H | 128.1° | 152.0° |
| CA | CB | CG | CD | 41.8° | 0.0° |
| CA | CB | CG | HB2 | 125.3° | 118.9° |
| CA | CB | CG | HB3 | 125.2° | 118.9° |
| CA | CB | CG | HG3 | 167.0° | 118.9° |
| CA | CB | CG | HG2 | 83.5° | 118.9° |
| CA | CB | HB2 | HB3 | 120.5° | 122.2° |
| HA | CA | N | CD | 125.3° | 79.6° |
| HA | CA | N | H | 109.4° | 33.1° |
| HA | CA | CB | CG | 146.6° | 95.0° |
| HA | CA | CB | HB2 | 88.1° | 146.0° |
| HA | CA | CB | HB3 | 21.4° | 23.8° |
| N | CD | CG | HD3 | 125.2° | 118.8° |
| N | CD | CG | HD2 | 125.3° | 118.7° |
| N | CD | HD3 | HD2 | 120.9° | 122.3° |
| N | CD | CG | CB | 39.5° | 23.7° |
| N | CD | CG | HG3 | 164.7° | 95.2° |
| N | CD | CG | HG2 | 85.8° | 142.8° |
| H | N | CD | CG | 102.6° | 152.1° |
| H | N | CD | HD3 | 132.2° | 89.0° |
| H | N | CD | HD2 | 22.7° | 33.4° |
| CG | CD | HD3 | HD2 | 120.9° | 122.5° |
| CD | CG | CB | HG3 | 125.2° | 118.9° |
| CD | CG | CB | HG2 | 125.3° | 118.9° |
| CD | CG | HG3 | HG2 | 120.8° | 122.1° |
| CD | CG | CB | HB2 | 167.1° | 118.9° |
| CD | CG | CB | HB3 | 83.4° | 118.9° |
| HD3 | CD | CG | CB | 85.8° | 142.6° |
| HD3 | CD | CG | HG3 | 39.5° | 23.7° |
| HD3 | CD | CG | HG2 | 148.9° | 98.4° |
| HD2 | CD | CG | CB | 164.8° | 94.9° |
| HD2 | CD | CG | HG3 | 70.0° | 146.2° |
| HD2 | CD | CG | HG2 | 39.5° | 24.1° |
| CB | CG | HG3 | HG2 | 120.8° | 122.3° |
| CG | CB | HB2 | HB3 | 120.4° | 122.1° |
| HG3 | CG | CB | HB2 | 67.7° | 0.0° |
| HG3 | CG | CB | HB3 | 41.8° | 122.2° |
| HG2 | CG | CB | HB2 | 41.8° | 122.2° |
| HG2 | CG | CB | HB3 | 151.3° | 0.0° |
