P2T
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.50Å | 1.51Å | |
| P | OP2 | sing | 1.62Å | 1.46Å | |
| P | O5' | sing | 1.62Å | 1.58Å | |
| P | OP3 | sing | 1.62Å | 12.69Å | |
| OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.42Å | |
| C5' | C4' | sing | 1.52Å | 1.49Å | |
| C5' | H5' | sing | 1.09Å | 1.11Å | |
| C5' | H5'' | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.52Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C1' | N1 | sing | 1.43Å | 1.47Å | |
| C1' | C2' | sing | 1.52Å | 1.53Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N1 | C6 | sing | 1.39Å | 1.38Å | |
| N1 | C2 | sing | 1.41Å | 1.39Å | |
| C6 | C5 | doub | 1.34Å | 1.34Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å | |
| C2 | O2 | doub | 1.23Å | 1.22Å | |
| C2 | N3 | sing | 1.40Å | 1.38Å | |
| N3 | C4 | sing | 1.39Å | 1.37Å | |
| N3 | HN3 | sing | 1.02Å | 1.02Å | |
| C4 | O4 | doub | 1.23Å | 1.21Å | |
| C4 | C5 | sing | 1.49Å | 1.45Å | |
| C5 | C5M | sing | 1.50Å | 1.49Å | |
| C5M | H71 | sing | 1.09Å | 1.12Å | |
| C5M | H72 | sing | 1.09Å | 1.11Å | |
| C5M | H73 | sing | 1.09Å | 1.11Å | |
| C2' | O2' | sing | 1.41Å | 1.42Å | |
| C2' | C3' | sing | 1.51Å | 1.52Å | |
| C2' | H2' | sing | 1.10Å | 1.11Å | |
| O2' | CB' | sing | 1.42Å | 1.42Å | |
| CB' | CC' | sing | 1.52Å | 1.53Å | |
| CB' | HB'1 | sing | 1.10Å | 1.11Å | |
| CB' | HB'2 | sing | 1.09Å | 1.12Å | |
| CC' | CD' | sing | 1.52Å | 1.54Å | |
| CC' | HC'1 | sing | 1.10Å | 1.11Å | |
| CC' | HC'2 | sing | 1.10Å | 1.11Å | |
| CD' | HD'1 | sing | 1.10Å | 1.11Å | |
| CD' | HD'2 | sing | 1.09Å | 1.12Å | |
| CD' | HD'3 | sing | 1.09Å | 1.12Å | |
| C3' | O3' | sing | 1.43Å | 1.41Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.5° | 115.3° |
| OP1 | P | O5' | 106.7° | 115.0° |
| OP1 | P | OP3 | 125.7° | 114.9° |
| OP2 | P | O5' | 110.0° | 103.8° |
| OP2 | P | OP3 | 108.0° | 103.3° |
| P | OP2 | HOP2 | 119.5° | 119.0° |
| O5' | P | OP3 | 78.0° | 102.9° |
| P | O5' | C5' | 119.7° | 118.5° |
| P | OP3 | HOP3 | 125.7° | 119.0° |
| O5' | C5' | C4' | 110.1° | 108.6° |
| O5' | C5' | H5' | 112.0° | 109.2° |
| O5' | C5' | H5'' | 112.0° | 109.3° |
| C4' | C5' | H5' | 111.9° | 110.1° |
| C4' | C5' | H5'' | 111.9° | 110.1° |
| C5' | C4' | O4' | 110.1° | 108.2° |
| C5' | C4' | C3' | 115.7° | 113.3° |
| C5' | C4' | H4' | 102.9° | 109.3° |
| H5' | C5' | H5'' | 98.4° | 109.6° |
| O4' | C4' | C3' | 103.1° | 105.9° |
| O4' | C4' | H4' | 115.6° | 107.7° |
| C4' | O4' | C1' | 109.4° | 109.2° |
| C3' | C4' | H4' | 109.9° | 112.2° |
| C4' | C3' | C2' | 101.3° | 102.1° |
| C4' | C3' | O3' | 113.0° | 107.9° |
| C4' | C3' | H3' | 113.9° | 114.5° |
| O4' | C1' | N1 | 108.6° | 109.0° |
| O4' | C1' | C2' | 106.6° | 106.5° |
| O4' | C1' | H1' | 112.3° | 108.9° |
| N1 | C1' | C2' | 110.8° | 112.5° |
| N1 | C1' | H1' | 108.2° | 107.3° |
| C1' | N1 | C6 | 121.5° | 118.5° |
| C1' | N1 | C2 | 117.5° | 121.3° |
| C2' | C1' | H1' | 110.2° | 112.6° |
| C1' | C2' | O2' | 105.9° | 112.6° |
| C1' | C2' | C3' | 100.8° | 102.0° |
| C1' | C2' | H2' | 116.6° | 111.1° |
| C6 | N1 | C2 | 121.0° | 120.2° |
| N1 | C6 | C5 | 123.6° | 124.5° |
| N1 | C6 | H6 | 119.7° | 114.7° |
| N1 | C2 | O2 | 122.7° | 123.8° |
| N1 | C2 | N3 | 114.8° | 115.1° |
| C5 | C6 | H6 | 116.7° | 120.7° |
| C6 | C5 | C4 | 118.1° | 118.4° |
| C6 | C5 | C5M | 123.2° | 123.6° |
| O2 | C2 | N3 | 122.5° | 121.1° |
| C2 | N3 | C4 | 126.9° | 127.0° |
| C2 | N3 | HN3 | 117.0° | 116.4° |
| C4 | N3 | HN3 | 116.1° | 116.6° |
| N3 | C4 | O4 | 120.1° | 123.6° |
| N3 | C4 | C5 | 115.6° | 114.8° |
| O4 | C4 | C5 | 124.3° | 121.6° |
| C4 | C5 | C5M | 118.7° | 118.0° |
| C5 | C5M | H71 | 107.3° | 109.7° |
| C5 | C5M | H72 | 123.2° | 109.8° |
| C5 | C5M | H73 | 107.3° | 109.7° |
| H71 | C5M | H72 | 107.4° | 109.4° |
| H71 | C5M | H73 | 102.4° | 109.4° |
| H72 | C5M | H73 | 107.4° | 108.9° |
| O2' | C2' | C3' | 108.4° | 112.3° |
| O2' | C2' | H2' | 110.0° | 108.6° |
| C2' | O2' | CB' | 114.4° | 111.9° |
| C3' | C2' | H2' | 114.4° | 110.1° |
| C2' | C3' | O3' | 113.1° | 110.3° |
| C2' | C3' | H3' | 113.8° | 114.0° |
| O2' | CB' | CC' | 108.6° | 108.8° |
| O2' | CB' | HB'1 | 112.5° | 108.5° |
| O2' | CB' | HB'2 | 112.5° | 108.6° |
| CC' | CB' | HB'1 | 112.5° | 111.0° |
| CC' | CB' | HB'2 | 112.6° | 110.9° |
| CB' | CC' | CD' | 113.1° | 111.8° |
| CB' | CC' | HC'1 | 110.9° | 109.6° |
| CB' | CC' | HC'2 | 110.9° | 109.6° |
| HB'1 | CB' | HB'2 | 97.9° | 109.0° |
| CD' | CC' | HC'1 | 110.9° | 109.9° |
| CD' | CC' | HC'2 | 110.9° | 109.8° |
| CC' | CD' | HD'1 | 110.9° | 111.0° |
| CC' | CD' | HD'2 | 113.1° | 110.3° |
| CC' | CD' | HD'3 | 110.9° | 111.0° |
| HC'1 | CC' | HC'2 | 99.4° | 105.9° |
| HD'1 | CD' | HD'2 | 110.9° | 108.1° |
| HD'1 | CD' | HD'3 | 99.4° | 108.3° |
| HD'2 | CD' | HD'3 | 110.9° | 108.1° |
| O3' | C3' | H3' | 102.2° | 107.8° |
| C3' | O3' | HO3' | 113.0° | 106.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 123.9° | 126.6° |
| OP1 | P | OP2 | OP3 | 152.7° | 126.2° |
| OP1 | P | O5' | OP3 | 124.0° | 125.8° |
| OP1 | P | OP2 | HOP2 | 180.0° | 48.7° |
| OP1 | P | O5' | C5' | 47.8° | 179.9° |
| OP1 | P | OP3 | HOP3 | 180.0° | 48.0° |
| OP2 | P | O5' | OP3 | 105.0° | 107.4° |
| OP2 | P | O5' | C5' | 178.8° | 53.2° |
| OP2 | P | OP3 | HOP3 | 29.4° | 78.5° |
| O5' | P | OP2 | HOP2 | 56.2° | 175.4° |
| P | O5' | C5' | C4' | 172.0° | 180.0° |
| P | O5' | C5' | H5' | 46.7° | 59.9° |
| P | O5' | C5' | H5'' | 62.7° | 59.9° |
| O5' | P | OP3 | HOP3 | 77.9° | 173.8° |
| OP3 | P | OP2 | HOP2 | 27.3° | 77.5° |
| OP3 | P | O5' | C5' | 76.2° | 54.2° |
| O5' | C5' | C4' | H5' | 125.3° | 119.5° |
| O5' | C5' | C4' | H5'' | 125.3° | 119.6° |
| O5' | C5' | H5' | H5'' | 117.9° | 119.6° |
| O5' | C5' | C4' | O4' | 67.7° | 62.4° |
| O5' | C5' | C4' | C3' | 48.6° | 179.5° |
| O5' | C5' | C4' | H4' | 168.5° | 54.6° |
| C4' | C5' | H5' | H5'' | 117.8° | 121.2° |
| C5' | C4' | O4' | C3' | 124.0° | 121.7° |
| C5' | C4' | O4' | H4' | 116.0° | 118.1° |
| C5' | C4' | C3' | H4' | 116.0° | 124.4° |
| C5' | C4' | O4' | C1' | 148.5° | 109.0° |
| C5' | C4' | C3' | C2' | 160.9° | 86.9° |
| C5' | C4' | C3' | O3' | 77.7° | 156.8° |
| C5' | C4' | C3' | H3' | 38.4° | 36.8° |
| H5' | C5' | C4' | O4' | 57.6° | 57.1° |
| H5' | C5' | C4' | C3' | 173.9° | 60.0° |
| H5' | C5' | C4' | H4' | 66.2° | 174.1° |
| H5'' | C5' | C4' | O4' | 167.0° | 178.0° |
| H5'' | C5' | C4' | C3' | 76.7° | 60.9° |
| H5'' | C5' | C4' | H4' | 43.2° | 65.0° |
| O4' | C4' | C3' | H4' | 123.8° | 117.2° |
| C4' | O4' | C1' | N1 | 117.6° | 132.9° |
| C4' | O4' | C1' | C2' | 1.8° | 11.3° |
| C4' | O4' | C1' | H1' | 122.7° | 110.3° |
| O4' | C4' | C3' | C2' | 40.8° | 31.5° |
| O4' | C4' | C3' | O3' | 162.1° | 84.7° |
| O4' | C4' | C3' | H3' | 81.8° | 155.2° |
| C3' | C4' | O4' | C1' | 24.5° | 12.8° |
| C4' | C3' | C2' | C1' | 40.8° | 37.1° |
| C4' | C3' | C2' | O2' | 70.1° | 158.0° |
| C4' | C3' | C2' | O3' | 121.3° | 114.5° |
| C4' | C3' | C2' | H3' | 122.6° | 124.0° |
| C4' | C3' | C2' | H2' | 166.8° | 80.9° |
| C4' | C3' | O3' | H3' | 122.8° | 124.2° |
| C4' | C3' | O3' | HO3' | 180.0° | 15.2° |
| H4' | C4' | O4' | C1' | 95.5° | 133.0° |
| H4' | C4' | C3' | C2' | 83.1° | 148.7° |
| H4' | C4' | C3' | O3' | 38.3° | 32.5° |
| H4' | C4' | C3' | H3' | 154.4° | 87.6° |
| O4' | C1' | N1 | C2' | 116.8° | 117.9° |
| O4' | C1' | N1 | H1' | 122.2° | 117.7° |
| O4' | C1' | C2' | H1' | 122.2° | 119.3° |
| O4' | C1' | N1 | C6 | 24.1° | 32.3° |
| O4' | C1' | N1 | C2 | 156.6° | 147.8° |
| O4' | C1' | C2' | O2' | 85.7° | 151.3° |
| O4' | C1' | C2' | C3' | 27.1° | 30.7° |
| O4' | C1' | C2' | H2' | 151.6° | 86.6° |
| N1 | C1' | C2' | H1' | 119.8° | 121.4° |
| C1' | N1 | C6 | C2 | 179.3° | 179.9° |
| C1' | N1 | C6 | C5 | 179.6° | 180.0° |
| C1' | N1 | C6 | H6 | 0.5° | 0.0° |
| C1' | N1 | C2 | O2 | 2.0° | 0.1° |
| C1' | N1 | C2 | N3 | 179.2° | 180.0° |
| N1 | C1' | C2' | O2' | 156.3° | 89.4° |
| N1 | C1' | C2' | C3' | 90.9° | 150.0° |
| N1 | C1' | C2' | H2' | 33.6° | 32.7° |
| C2' | C1' | N1 | C6 | 92.8° | 85.6° |
| C2' | C1' | N1 | C2 | 86.6° | 94.3° |
| C1' | C2' | O2' | C3' | 107.4° | 114.5° |
| C1' | C2' | O2' | H2' | 126.8° | 123.5° |
| C1' | C2' | C3' | H2' | 126.0° | 118.0° |
| C1' | C2' | O2' | CB' | 78.2° | 174.5° |
| C1' | C2' | C3' | O3' | 162.1° | 77.4° |
| C1' | C2' | C3' | H3' | 81.8° | 161.1° |
| H1' | C1' | N1 | C6 | 146.3° | 150.0° |
| H1' | C1' | N1 | C2 | 34.3° | 30.1° |
| H1' | C1' | C2' | O2' | 36.5° | 32.1° |
| H1' | C1' | C2' | C3' | 149.3° | 88.5° |
| H1' | C1' | C2' | H2' | 86.2° | 154.2° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | N1 | C2 | O2 | 177.3° | 180.0° |
| C6 | N1 | C2 | N3 | 1.5° | 0.0° |
| N1 | C6 | C5 | C4 | 0.3° | 0.0° |
| N1 | C6 | C5 | C5M | 179.3° | 180.0° |
| C2 | N1 | C6 | C5 | 1.1° | 0.0° |
| C2 | N1 | C6 | H6 | 178.9° | 180.0° |
| N1 | C2 | O2 | N3 | 178.7° | 179.9° |
| N1 | C2 | N3 | C4 | 1.1° | 0.0° |
| N1 | C2 | N3 | HN3 | 178.8° | 179.9° |
| C6 | C5 | C4 | N3 | 0.1° | 0.0° |
| C6 | C5 | C4 | O4 | 179.9° | 180.0° |
| C6 | C5 | C4 | C5M | 179.6° | 180.0° |
| C6 | C5 | C5M | H71 | 54.7° | 64.2° |
| C6 | C5 | C5M | H72 | 180.0° | 56.0° |
| C6 | C5 | C5M | H73 | 54.7° | 175.6° |
| H6 | C6 | C5 | C4 | 179.7° | 180.0° |
| H6 | C6 | C5 | C5M | 0.7° | 0.0° |
| O2 | C2 | N3 | C4 | 177.7° | 179.9° |
| O2 | C2 | N3 | HN3 | 2.4° | 0.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 179.4° | 179.9° |
| C2 | N3 | C4 | C5 | 0.4° | 0.1° |
| N3 | C4 | O4 | C5 | 179.8° | 180.0° |
| N3 | C4 | C5 | C5M | 179.7° | 180.0° |
| HN3 | N3 | C4 | O4 | 0.6° | 0.0° |
| HN3 | N3 | C4 | C5 | 179.6° | 180.0° |
| O4 | C4 | C5 | C5M | 0.5° | 0.0° |
| C4 | C5 | C5M | H71 | 125.7° | 115.8° |
| C4 | C5 | C5M | H72 | 0.4° | 124.0° |
| C4 | C5 | C5M | H73 | 124.8° | 4.4° |
| C5 | C5M | H71 | H72 | 134.3° | 120.5° |
| C5 | C5M | H71 | H73 | 112.9° | 120.4° |
| C5 | C5M | H72 | H73 | 125.3° | 120.1° |
| H71 | C5M | H72 | H73 | 109.5° | 119.5° |
| O2' | C2' | C3' | H2' | 123.1° | 121.1° |
| C2' | O2' | CB' | CC' | 162.2° | 179.2° |
| C2' | O2' | CB' | HB'1 | 72.5° | 60.0° |
| C2' | O2' | CB' | HB'2 | 36.9° | 58.3° |
| O2' | C2' | C3' | O3' | 51.2° | 43.5° |
| O2' | C2' | C3' | H3' | 167.3° | 78.0° |
| C3' | C2' | O2' | CB' | 174.3° | 60.0° |
| C2' | C3' | O3' | H3' | 122.8° | 125.1° |
| C2' | C3' | O3' | HO3' | 65.6° | 95.6° |
| H2' | C2' | O2' | CB' | 48.6° | 62.0° |
| H2' | C2' | C3' | O3' | 71.9° | 164.6° |
| H2' | C2' | C3' | H3' | 44.2° | 43.1° |
| O2' | CB' | CC' | HB'1 | 125.3° | 119.3° |
| O2' | CB' | CC' | HB'2 | 125.3° | 119.4° |
| O2' | CB' | HB'1 | HB'2 | 118.4° | 118.0° |
| O2' | CB' | CC' | CD' | 60.4° | 179.4° |
| O2' | CB' | CC' | HC'1 | 64.8° | 57.3° |
| O2' | CB' | CC' | HC'2 | 174.3° | 58.6° |
| CC' | CB' | HB'1 | HB'2 | 118.5° | 122.4° |
| CB' | CC' | CD' | HC'1 | 125.3° | 122.0° |
| CB' | CC' | CD' | HC'2 | 125.3° | 121.9° |
| CB' | CC' | HC'1 | HC'2 | 116.8° | 118.2° |
| CB' | CC' | CD' | HD'1 | 54.7° | 60.2° |
| CB' | CC' | CD' | HD'2 | 180.0° | 180.0° |
| CB' | CC' | CD' | HD'3 | 54.7° | 60.2° |
| HB'1 | CB' | CC' | CD' | 174.3° | 60.1° |
| HB'1 | CB' | CC' | HC'1 | 60.4° | 62.0° |
| HB'1 | CB' | CC' | HC'2 | 49.0° | 177.9° |
| HB'2 | CB' | CC' | CD' | 64.9° | 61.2° |
| HB'2 | CB' | CC' | HC'1 | 169.9° | 176.7° |
| HB'2 | CB' | CC' | HC'2 | 60.4° | 60.8° |
| CD' | CC' | HC'1 | HC'2 | 116.8° | 118.6° |
| CC' | CD' | HD'1 | HD'2 | 126.5° | 121.1° |
| CC' | CD' | HD'1 | HD'3 | 116.7° | 122.1° |
| CC' | CD' | HD'2 | HD'3 | 125.3° | 121.5° |
| HC'1 | CC' | CD' | HD'1 | 180.0° | 61.7° |
| HC'1 | CC' | CD' | HD'2 | 54.7° | 58.0° |
| HC'1 | CC' | CD' | HD'3 | 70.5° | 177.8° |
| HC'2 | CC' | CD' | HD'1 | 70.6° | 177.9° |
| HC'2 | CC' | CD' | HD'2 | 54.7° | 58.1° |
| HC'2 | CC' | CD' | HD'3 | 180.0° | 61.6° |
| HD'1 | CD' | HD'2 | HD'3 | 109.5° | 117.0° |
| H3' | C3' | O3' | HO3' | 57.2° | 139.4° |
