P2G

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O6	C6	doub	1.22Å	1.23Å
C6	N1	sing	1.35Å	1.41Å	Aromatic
C6	C5	sing	1.41Å	1.40Å	Aromatic
N1	C2	sing	1.36Å	1.41Å	Aromatic
N1	HN1	sing	0.97Å	1.02Å
C2	N2	sing	1.37Å	1.33Å
C2	N3	doub	1.31Å	1.35Å	Aromatic
N2	HN21	sing	0.97Å	1.02Å
N2	HN22	sing	0.97Å	1.02Å
N3	C4	sing	1.34Å	1.35Å	Aromatic
C4	C5	doub	1.40Å	1.40Å	Aromatic
C4	N9	sing	1.37Å	1.34Å	Aromatic
C5	N7	sing	1.36Å	1.33Å	Aromatic
N7	C8	doub	1.30Å	1.33Å	Aromatic
C8	N9	sing	1.36Å	1.33Å	Aromatic
C8	H8	sing	1.08Å	1.10Å
N9	C1'	sing	1.47Å	1.49Å
C1'	O4'	sing	1.44Å	1.44Å
C1'	C2'	sing	1.54Å	1.53Å
C1'	H1'	sing	1.09Å	1.11Å
O4'	C4'	sing	1.44Å	1.43Å
C2'	O2'	sing	1.46Å	1.44Å
C2'	C3'	sing	1.56Å	1.52Å
C2'	H2'	sing	1.09Å	1.12Å
O2'	C1	sing	1.44Å	1.44Å
C1	P	sing	1.82Å	1.84Å
C1	O3'	sing	1.44Å	1.44Å
C1	H1	sing	1.09Å	1.11Å
P	O3	sing	1.61Å	1.60Å
P	O4	sing	1.61Å	1.61Å
P	O2	doub	1.48Å	1.48Å
O3	HO3	sing	0.97Å	0.95Å
O4	HO4	sing	0.97Å	0.95Å
O3'	C3'	sing	1.44Å	1.44Å
C3'	C4'	sing	1.54Å	1.53Å
C3'	H3'	sing	1.09Å	1.12Å
C4'	C5'	sing	1.53Å	1.53Å
C4'	H4'	sing	1.09Å	1.11Å
C5'	O5'	sing	1.43Å	1.43Å
C5'	H5'1	sing	1.09Å	1.12Å
C5'	H5'2	sing	1.09Å	1.12Å
O5'	H5'	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O6	C6	N1	118.6°	120.8°
O6	C6	C5	121.5°	120.9°
N1	C6	C5	119.9°	118.3°
C6	N1	C2	121.1°	120.4°
C6	N1	HN1	119.6°	119.8°
C6	C5	C4	116.7°	118.6°
C6	C5	N7	135.4°	134.1°
C2	N1	HN1	119.4°	119.8°
N1	C2	N2	120.5°	119.1°
N1	C2	N3	117.0°	121.9°
N2	C2	N3	122.4°	119.0°
C2	N2	HN21	120.5°	120.0°
C2	N2	HN22	108.3°	120.0°
C2	N3	C4	123.2°	121.1°
HN21	N2	HN22	108.2°	120.0°
N3	C4	C5	122.1°	119.7°
N3	C4	N9	131.0°	134.2°
C5	C4	N9	106.8°	106.1°
C4	C5	N7	107.8°	107.3°
C4	N9	C8	107.3°	107.5°
C4	N9	C1'	129.3°	126.3°
C5	N7	C8	107.1°	109.3°
N7	C8	N9	110.9°	109.8°
N7	C8	H8	124.5°	125.1°
N9	C8	H8	124.6°	125.1°
C8	N9	C1'	121.0°	126.3°
N9	C1'	O4'	105.0°	110.4°
N9	C1'	C2'	120.9°	110.4°
N9	C1'	H1'	103.8°	110.3°
O4'	C1'	C2'	106.0°	105.0°
O4'	C1'	H1'	119.3°	110.4°
C1'	O4'	C4'	105.6°	105.3°
C2'	C1'	H1'	102.8°	110.3°
C1'	C2'	O2'	115.5°	109.0°
C1'	C2'	C3'	104.8°	103.8°
C1'	C2'	H2'	107.7°	113.1°
O4'	C4'	C3'	103.4°	104.9°
O4'	C4'	C5'	111.1°	110.3°
O4'	C4'	H4'	114.1°	110.3°
O2'	C2'	C3'	106.2°	104.0°
O2'	C2'	H2'	106.3°	112.7°
C2'	O2'	C1	109.0°	105.0°
C3'	C2'	H2'	116.8°	113.6°
C2'	C3'	O3'	102.0°	105.2°
C2'	C3'	C4'	102.9°	103.9°
C2'	C3'	H3'	121.0°	113.0°
O2'	C1	P	111.9°	110.5°
O2'	C1	O3'	102.6°	104.6°
O2'	C1	H1	114.3°	110.5°
P	C1	O3'	114.5°	110.4°
P	C1	H1	102.3°	110.3°
C1	P	O3	111.6°	109.5°
C1	P	O4	104.4°	109.5°
C1	P	O2	110.2°	109.5°
O3'	C1	H1	111.7°	110.4°
C1	O3'	C3'	108.5°	104.8°
O3	P	O4	108.1°	109.5°
O3	P	O2	109.9°	109.5°
P	O3	HO3	111.6°	106.8°
O4	P	O2	112.6°	109.4°
P	O4	HO4	104.4°	106.8°
O3'	C3'	C4'	117.2°	108.7°
O3'	C3'	H3'	107.6°	112.7°
C4'	C3'	H3'	106.8°	112.8°
C3'	C4'	C5'	113.9°	110.4°
C3'	C4'	H4'	111.2°	110.4°
C5'	C4'	H4'	103.5°	110.3°
C4'	C5'	O5'	108.4°	109.4°
C4'	C5'	H5'1	112.6°	109.4°
C4'	C5'	H5'2	112.5°	109.5°
O5'	C5'	H5'1	112.6°	109.5°
O5'	C5'	H5'2	112.6°	109.5°
C5'	O5'	H5'	108.4°	106.8°
H5'1	C5'	H5'2	97.8°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O6	C6	N1	C5	178.8°	179.8°
O6	C6	N1	C2	178.4°	179.7°
O6	C6	N1	HN1	1.6°	0.2°
O6	C6	C5	C4	177.5°	180.0°
O6	C6	C5	N7	5.4°	0.0°
C6	N1	C2	HN1	180.0°	179.5°
C6	N1	C2	N2	174.3°	179.7°
C6	N1	C2	N3	0.8°	0.5°
N1	C6	C5	C4	1.3°	0.3°
N1	C6	C5	N7	175.9°	179.7°
C5	C6	N1	C2	0.4°	0.5°
C5	C6	N1	HN1	179.5°	180.0°
C6	C5	C4	N3	0.9°	0.0°
C6	C5	C4	N7	177.9°	180.0°
C6	C5	C4	N9	179.0°	180.0°
C6	C5	N7	C8	177.4°	180.0°
N1	C2	N2	N3	174.9°	179.7°
N1	C2	N2	HN21	180.0°	179.7°
N1	C2	N2	HN22	54.7°	0.5°
N1	C2	N3	C4	1.2°	0.3°
HN1	N1	C2	N2	5.6°	0.2°
HN1	N1	C2	N3	179.2°	180.0°
C2	N2	HN21	HN22	125.3°	179.8°
N2	C2	N3	C4	173.9°	180.0°
N3	C2	N2	HN21	5.1°	0.0°
N3	C2	N2	HN22	130.4°	179.8°
C2	N3	C4	C5	0.3°	0.0°
C2	N3	C4	N9	177.2°	180.0°
N3	C4	C5	N9	178.1°	180.0°
N3	C4	C5	N7	176.9°	180.0°
N3	C4	N9	C8	176.2°	180.0°
N3	C4	N9	C1'	21.8°	0.0°
C4	C5	N7	C8	0.1°	0.0°
C5	C4	N9	C8	1.7°	0.0°
C5	C4	N9	C1'	160.4°	180.0°
N9	C4	C5	N7	1.1°	0.0°
C4	N9	C8	N7	1.6°	0.0°
C4	N9	C8	C1'	163.8°	180.0°
C4	N9	C8	H8	178.3°	180.0°
C4	N9	C1'	O4'	71.4°	157.9°
C4	N9	C1'	C2'	48.2°	86.5°
C4	N9	C1'	H1'	162.6°	35.7°
C5	N7	C8	N9	0.9°	0.0°
C5	N7	C8	H8	179.1°	180.0°
N7	C8	N9	H8	180.0°	180.0°
N7	C8	N9	C1'	162.2°	180.0°
C8	N9	C1'	O4'	88.6°	22.1°
C8	N9	C1'	C2'	151.8°	93.5°
C8	N9	C1'	H1'	37.5°	144.3°
H8	C8	N9	C1'	17.8°	0.0°
N9	C1'	O4'	C2'	129.1°	118.9°
N9	C1'	O4'	H1'	115.8°	122.2°
N9	C1'	C2'	H1'	114.9°	122.1°
N9	C1'	O4'	C4'	161.1°	159.6°
N9	C1'	C2'	O2'	116.0°	106.8°
N9	C1'	C2'	C3'	127.5°	142.9°
N9	C1'	C2'	H2'	2.5°	19.3°
O4'	C1'	C2'	H1'	126.0°	118.9°
O4'	C1'	C2'	O2'	124.9°	134.2°
O4'	C1'	C2'	C3'	8.4°	23.9°
O4'	C1'	C2'	H2'	116.6°	99.6°
C1'	O4'	C4'	C3'	42.7°	40.7°
C1'	O4'	C4'	C5'	165.3°	159.7°
C1'	O4'	C4'	H4'	78.2°	78.2°
C2'	C1'	O4'	C4'	32.0°	40.6°
C1'	C2'	O2'	C3'	115.7°	110.2°
C1'	C2'	O2'	H2'	119.3°	126.4°
C1'	C2'	C3'	H2'	119.0°	123.2°
C1'	C2'	O2'	C1	110.5°	86.7°
C1'	C2'	C3'	O3'	138.3°	114.3°
C1'	C2'	C3'	C4'	16.4°	0.2°
C1'	C2'	C3'	H3'	102.5°	122.3°
H1'	C1'	O4'	C4'	83.2°	78.3°
H1'	C1'	C2'	O2'	1.1°	15.3°
H1'	C1'	C2'	C3'	117.6°	95.0°
H1'	C1'	C2'	H2'	117.5°	141.5°
O4'	C4'	C3'	C2'	35.9°	24.2°
O4'	C4'	C3'	O3'	146.9°	135.8°
O4'	C4'	C3'	C5'	120.7°	118.9°
O4'	C4'	C3'	H4'	122.8°	118.9°
O4'	C4'	C3'	H3'	92.4°	98.5°
O4'	C4'	C5'	H4'	122.9°	122.1°
O4'	C4'	C5'	O5'	56.3°	66.4°
O4'	C4'	C5'	H5'1	178.4°	173.6°
O4'	C4'	C5'	H5'2	69.0°	53.5°
O2'	C2'	C3'	H2'	118.2°	122.8°
C2'	O2'	C1	P	147.2°	158.4°
C2'	O2'	C1	O3'	24.0°	39.5°
C2'	O2'	C1	H1	97.2°	79.3°
O2'	C2'	C3'	O3'	15.6°	0.4°
O2'	C2'	C3'	C4'	106.3°	113.8°
O2'	C2'	C3'	H3'	134.8°	123.7°
C3'	C2'	O2'	C1	5.2°	23.5°
C2'	C3'	O3'	C1	31.6°	24.0°
C2'	C3'	O3'	C4'	111.4°	110.8°
C2'	C3'	O3'	H3'	128.3°	123.5°
C2'	C3'	C4'	H3'	128.4°	122.7°
C2'	C3'	C4'	C5'	156.6°	143.1°
C2'	C3'	C4'	H4'	86.9°	94.6°
H2'	C2'	O2'	C1	130.2°	146.9°
H2'	C2'	C3'	O3'	102.6°	122.4°
H2'	C2'	C3'	C4'	135.5°	123.4°
H2'	C2'	C3'	H3'	16.5°	0.9°
O2'	C1	P	O3'	116.2°	115.3°
O2'	C1	P	H1	122.8°	122.5°
O2'	C1	O3'	H1	122.9°	118.8°
O2'	C1	P	O3	167.5°	176.7°
O2'	C1	P	O4	51.0°	63.3°
O2'	C1	P	O2	70.2°	56.7°
O2'	C1	O3'	C3'	35.1°	39.7°
P	C1	O3'	H1	115.6°	122.3°
C1	P	O3	O4	114.3°	120.0°
C1	P	O3	O2	122.5°	120.0°
C1	P	O4	O2	119.5°	120.0°
C1	P	O3	HO3	180.0°	60.0°
C1	P	O4	HO4	180.0°	179.9°
P	C1	O3'	C3'	156.6°	158.6°
O3'	C1	P	O3	51.3°	61.4°
O3'	C1	P	O4	65.2°	178.6°
O3'	C1	P	O2	173.6°	58.6°
C1	O3'	C3'	C4'	79.9°	86.7°
C1	O3'	C3'	H3'	159.9°	147.5°
H1	C1	P	O3	69.7°	60.9°
H1	C1	P	O4	173.8°	59.2°
H1	C1	P	O2	52.6°	179.1°
H1	C1	O3'	C3'	87.8°	79.1°
O3	P	O4	O2	121.5°	120.0°
O3	P	O4	HO4	61.1°	60.0°
O4	P	O3	HO3	65.8°	60.0°
O2	P	O3	HO3	57.5°	180.0°
O2	P	O4	HO4	60.5°	59.9°
O3'	C3'	C4'	H3'	120.7°	125.7°
O3'	C3'	C4'	C5'	92.5°	105.3°
O3'	C3'	C4'	H4'	24.0°	17.0°
C3'	C4'	C5'	H4'	120.9°	122.3°
C3'	C4'	C5'	O5'	172.5°	178.0°
C3'	C4'	C5'	H5'1	62.2°	58.0°
C3'	C4'	C5'	H5'2	47.2°	62.0°
H3'	C3'	C4'	C5'	28.2°	20.4°
H3'	C3'	C4'	H4'	144.7°	142.7°
C4'	C5'	O5'	H5'1	125.3°	120.0°
C4'	C5'	O5'	H5'2	125.2°	120.0°
C4'	C5'	H5'1	H5'2	118.4°	120.0°
C4'	C5'	O5'	H5'	180.0°	180.0°
H4'	C4'	C5'	O5'	66.6°	55.7°
H4'	C4'	C5'	H5'1	58.7°	64.3°
H4'	C4'	C5'	H5'2	168.1°	175.7°
O5'	C5'	H5'1	H5'2	118.6°	120.1°
H5'1	C5'	O5'	H5'	54.7°	60.0°
H5'2	C5'	O5'	H5'	54.8°	60.0°

Definition date:	2005-08-04
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB
Derived from:	2AI3