P1D

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3	P	sing	1.61Å	1.61Å
O3	HO3	sing	0.97Å	0.95Å
P	O4	sing	1.61Å	1.60Å
P	O2	doub	1.48Å	1.49Å
P	C1P	sing	1.82Å	1.81Å
O4	HO4	sing	0.97Å	0.95Å
C1P	C1	sing	1.53Å	1.54Å
C1P	H1P1	sing	1.09Å	1.11Å
C1P	H1P2	sing	1.09Å	1.11Å
C1	O3'	sing	1.44Å	1.44Å
C1	O2'	sing	1.44Å	1.44Å
C1	H1	sing	1.09Å	1.12Å
O3'	C3'	sing	1.45Å	1.44Å
O2'	C2'	sing	1.45Å	1.44Å
C2'	C3'	sing	1.56Å	1.52Å
C2'	C1'	sing	1.54Å	1.53Å
C2'	H2'	sing	1.09Å	1.11Å
C3'	C4'	sing	1.55Å	1.52Å
C3'	H3'	sing	1.09Å	1.12Å
C4'	C5'	sing	1.53Å	1.54Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	H4'	sing	1.09Å	1.12Å
C5'	O5'	sing	1.43Å	1.43Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.12Å
O5'	H5'	sing	0.97Å	0.95Å
O4'	C1'	sing	1.44Å	1.45Å
C1'	C9	sing	1.51Å	1.54Å
C1'	H1'	sing	1.09Å	1.12Å
C9	C8	doub	1.35Å	1.33Å	Aromatic
C9	C4	sing	1.41Å	1.39Å	Aromatic
C8	N7	sing	1.36Å	1.33Å	Aromatic
C8	H8	sing	1.08Å	1.10Å
N7	C5	sing	1.38Å	1.33Å	Aromatic
N7	HN7	sing	0.97Å	1.02Å
C5	C4	doub	1.40Å	1.40Å	Aromatic
C5	C6	sing	1.41Å	1.40Å	Aromatic
C4	N3	sing	1.36Å	1.36Å	Aromatic
N3	C2	doub	1.30Å	1.33Å	Aromatic
C2	N1	sing	1.36Å	1.41Å	Aromatic
C2	H2	sing	1.08Å	1.10Å
N1	C6	sing	1.35Å	1.41Å	Aromatic
N1	HN1	sing	0.97Å	1.02Å
C6	O6	doub	1.22Å	1.23Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	O3	HO3	109.3°	106.8°
O3	P	O4	109.3°	109.5°
O3	P	O2	112.4°	109.5°
O3	P	C1P	108.6°	109.5°
O4	P	O2	108.5°	109.5°
O4	P	C1P	107.3°	109.4°
P	O4	HO4	109.4°	106.8°
O2	P	C1P	110.6°	109.5°
P	C1P	C1	113.1°	109.5°
P	C1P	H1P1	110.8°	109.5°
P	C1P	H1P2	110.9°	109.5°
C1	C1P	H1P1	110.9°	109.5°
C1	C1P	H1P2	110.9°	109.4°
C1P	C1	O3'	107.9°	110.2°
C1P	C1	O2'	116.0°	110.1°
C1P	C1	H1	104.4°	110.1°
H1P1	C1P	H1P2	99.5°	109.5°
O3'	C1	O2'	103.4°	106.1°
O3'	C1	H1	116.8°	110.2°
C1	O3'	C3'	111.0°	107.5°
O2'	C1	H1	108.8°	110.1°
C1	O2'	C2'	109.6°	103.7°
O3'	C3'	C2'	104.5°	104.3°
O3'	C3'	C4'	111.2°	108.9°
O3'	C3'	H3'	110.7°	112.9°
O2'	C2'	C3'	105.2°	103.5°
O2'	C2'	C1'	114.7°	108.6°
O2'	C2'	H2'	107.5°	113.2°
C3'	C2'	C1'	105.1°	104.1°
C3'	C2'	H2'	116.8°	113.5°
C2'	C3'	C4'	106.7°	102.2°
C2'	C3'	H3'	114.9°	114.2°
C1'	C2'	H2'	107.8°	113.2°
C2'	C1'	O4'	104.4°	107.4°
C2'	C1'	C9	120.0°	110.0°
C2'	C1'	H1'	107.2°	109.9°
C4'	C3'	H3'	108.7°	113.4°
C3'	C4'	C5'	111.6°	110.6°
C3'	C4'	O4'	103.7°	104.0°
C3'	C4'	H4'	114.8°	110.5°
C5'	C4'	O4'	116.8°	110.5°
C5'	C4'	H4'	101.1°	110.5°
C4'	C5'	O5'	111.0°	109.5°
C4'	C5'	H5'1	111.6°	109.5°
C4'	C5'	H5'2	111.6°	109.5°
O4'	C4'	H4'	109.4°	110.6°
C4'	O4'	C1'	109.4°	106.9°
O5'	C5'	H5'1	111.7°	109.5°
O5'	C5'	H5'2	111.7°	109.5°
C5'	O5'	H5'	110.9°	106.9°
H5'1	C5'	H5'2	98.7°	109.4°
O4'	C1'	C9	113.0°	109.9°
O4'	C1'	H1'	115.1°	109.9°
C9	C1'	H1'	97.5°	109.8°
C1'	C9	C8	123.3°	126.1°
C1'	C9	C4	128.5°	126.1°
C8	C9	C4	108.0°	107.8°
C9	C8	N7	109.6°	109.4°
C9	C8	H8	125.2°	125.3°
C9	C4	C5	105.0°	106.6°
C9	C4	N3	132.4°	134.0°
N7	C8	H8	125.2°	125.3°
C8	N7	C5	109.1°	108.8°
C8	N7	HN7	125.5°	125.6°
C5	N7	HN7	125.5°	125.6°
N7	C5	C4	108.3°	107.3°
N7	C5	C6	134.9°	134.2°
C4	C5	C6	116.7°	118.5°
C5	C4	N3	122.6°	119.3°
C5	C6	N1	119.1°	118.4°
C5	C6	O6	121.7°	120.8°
C4	N3	C2	122.7°	121.0°
N3	C2	N1	117.4°	122.2°
N3	C2	H2	118.5°	118.9°
N1	C2	H2	124.1°	118.9°
C2	N1	C6	121.4°	120.5°
C2	N1	HN1	119.3°	119.8°
C6	N1	HN1	119.3°	119.7°
N1	C6	O6	119.1°	120.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3	P	O4	O2	122.9°	120.0°
O3	P	O4	C1P	117.6°	120.0°
O3	P	O2	C1P	121.6°	120.1°
O3	P	O4	HO4	180.0°	60.0°
O3	P	C1P	C1	153.5°	65.0°
O3	P	C1P	H1P1	28.3°	175.0°
O3	P	C1P	H1P2	81.3°	54.9°
HO3	O3	P	O4	180.0°	60.0°
HO3	O3	P	O2	59.4°	180.0°
HO3	O3	P	C1P	63.3°	60.0°
O4	P	O2	C1P	117.4°	119.9°
O4	P	C1P	C1	88.4°	175.0°
O4	P	C1P	H1P1	146.4°	55.0°
O4	P	C1P	H1P2	36.8°	65.0°
O2	P	O4	HO4	57.0°	60.0°
O2	P	C1P	C1	29.7°	55.1°
O2	P	C1P	H1P1	95.5°	65.0°
O2	P	C1P	H1P2	154.9°	175.0°
C1P	P	O4	HO4	62.4°	180.0°
P	C1P	C1	H1P1	125.2°	120.0°
P	C1P	C1	H1P2	125.2°	120.0°
P	C1P	H1P1	H1P2	116.7°	120.0°
P	C1P	C1	O3'	166.0°	56.6°
P	C1P	C1	O2'	78.6°	60.0°
P	C1P	C1	H1	41.1°	178.4°
C1	C1P	H1P1	H1P2	116.8°	120.0°
C1P	C1	O3'	O2'	123.4°	119.1°
C1P	C1	O3'	H1	117.2°	121.7°
C1P	C1	O2'	H1	117.3°	121.6°
C1P	C1	O3'	C3'	100.5°	146.3°
C1P	C1	O2'	C2'	92.4°	158.5°
H1P1	C1P	C1	O3'	68.7°	176.7°
H1P1	C1P	C1	O2'	46.6°	60.0°
H1P1	C1P	C1	H1	166.3°	61.6°
H1P2	C1P	C1	O3'	40.8°	63.3°
H1P2	C1P	C1	O2'	156.2°	180.0°
H1P2	C1P	C1	H1	84.1°	58.4°
O3'	C1	O2'	H1	124.8°	119.2°
O3'	C1	O2'	C2'	25.5°	39.3°
C1	O3'	C3'	C2'	11.7°	4.8°
C1	O3'	C3'	C4'	103.1°	113.3°
C1	O3'	C3'	H3'	136.0°	119.8°
O2'	C1	O3'	C3'	22.9°	27.1°
C1	O2'	C2'	C3'	18.8°	34.9°
C1	O2'	C2'	C1'	96.2°	145.1°
C1	O2'	C2'	H2'	144.0°	88.4°
H1	C1	O3'	C3'	142.3°	92.0°
H1	C1	O2'	C2'	150.3°	79.9°
O3'	C3'	C2'	O2'	4.3°	18.7°
O3'	C3'	C2'	C4'	117.9°	113.4°
O3'	C3'	C2'	H3'	121.6°	123.8°
O3'	C3'	C2'	C1'	117.2°	132.1°
O3'	C3'	C2'	H2'	123.4°	104.4°
O3'	C3'	C4'	H3'	122.1°	126.6°
O3'	C3'	C4'	C5'	139.5°	95.8°
O3'	C3'	C4'	O4'	94.0°	145.5°
O3'	C3'	C4'	H4'	25.2°	26.9°
O2'	C2'	C3'	C1'	121.5°	113.5°
O2'	C2'	C3'	H2'	119.2°	123.1°
O2'	C2'	C1'	H2'	119.7°	126.6°
O2'	C2'	C3'	C4'	122.1°	94.7°
O2'	C2'	C3'	H3'	117.3°	142.5°
O2'	C2'	C1'	O4'	96.7°	113.9°
O2'	C2'	C1'	C9	135.4°	126.6°
O2'	C2'	C1'	H1'	25.8°	5.6°
C3'	C2'	C1'	H2'	125.2°	123.7°
C2'	C3'	C4'	H3'	124.5°	123.4°
C2'	C3'	C4'	C5'	107.1°	154.2°
C2'	C3'	C4'	O4'	19.4°	35.6°
C2'	C3'	C4'	H4'	138.6°	83.1°
C3'	C2'	C1'	O4'	18.4°	4.1°
C3'	C2'	C1'	C9	109.5°	123.6°
C3'	C2'	C1'	H1'	140.9°	115.4°
C1'	C2'	C3'	C4'	0.7°	18.8°
C1'	C2'	C3'	H3'	121.2°	104.1°
C2'	C1'	O4'	C4'	32.5°	27.7°
C2'	C1'	O4'	C9	132.0°	119.6°
C2'	C1'	O4'	H1'	117.2°	119.5°
C2'	C1'	C9	H1'	114.8°	121.0°
C2'	C1'	C9	C8	162.0°	94.4°
C2'	C1'	C9	C4	12.7°	85.2°
H2'	C2'	C3'	C4'	118.7°	142.2°
H2'	C2'	C3'	H3'	1.9°	19.4°
H2'	C2'	C1'	O4'	143.6°	119.6°
H2'	C2'	C1'	C9	15.7°	0.1°
H2'	C2'	C1'	H1'	93.8°	120.9°
C3'	C4'	C5'	O4'	119.0°	114.6°
C3'	C4'	C5'	H4'	122.5°	122.7°
C3'	C4'	O4'	H4'	122.9°	118.7°
C3'	C4'	C5'	O5'	171.3°	177.0°
C3'	C4'	C5'	H5'1	63.4°	63.0°
C3'	C4'	C5'	H5'2	46.0°	57.0°
C3'	C4'	O4'	C1'	32.7°	40.0°
H3'	C3'	C4'	C5'	17.3°	30.8°
H3'	C3'	C4'	O4'	143.9°	87.8°
H3'	C3'	C4'	H4'	96.9°	153.5°
C5'	C4'	O4'	H4'	114.0°	122.7°
C4'	C5'	O5'	H5'1	125.2°	120.1°
C4'	C5'	O5'	H5'2	125.2°	120.0°
C4'	C5'	H5'1	H5'2	117.5°	120.0°
C4'	C5'	O5'	H5'	180.0°	179.9°
C5'	C4'	O4'	C1'	90.5°	158.6°
O4'	C4'	C5'	O5'	52.4°	68.4°
O4'	C4'	C5'	H5'1	177.7°	51.6°
O4'	C4'	C5'	H5'2	72.9°	171.6°
C4'	O4'	C1'	C9	99.5°	147.2°
C4'	O4'	C1'	H1'	149.7°	91.8°
H4'	C4'	C5'	O5'	66.2°	54.3°
H4'	C4'	C5'	H5'1	59.1°	174.3°
H4'	C4'	C5'	H5'2	168.5°	65.7°
H4'	C4'	O4'	C1'	155.6°	78.7°
O5'	C5'	H5'1	H5'2	117.6°	120.0°
H5'1	C5'	O5'	H5'	54.7°	60.0°
H5'2	C5'	O5'	H5'	54.8°	59.9°
O4'	C1'	C9	H1'	121.4°	121.0°
O4'	C1'	C9	C8	38.2°	23.6°
O4'	C1'	C9	C4	136.6°	156.8°
C1'	C9	C8	C4	175.7°	179.7°
C1'	C9	C8	N7	175.5°	179.9°
C1'	C9	C8	H8	4.5°	0.1°
C1'	C9	C4	C5	174.9°	179.9°
C1'	C9	C4	N3	2.7°	0.8°
H1'	C1'	C9	C8	83.2°	144.5°
H1'	C1'	C9	C4	102.1°	35.8°
C9	C8	N7	H8	180.0°	180.0°
C9	C8	N7	C5	0.3°	0.0°
C9	C8	N7	HN7	179.7°	180.0°
C8	C9	C4	C5	0.5°	0.4°
C8	C9	C4	N3	178.0°	179.5°
C4	C9	C8	N7	0.1°	0.2°
C4	C9	C8	H8	179.8°	179.8°
C9	C4	C5	N7	0.7°	0.4°
C9	C4	C5	N3	177.8°	179.3°
C9	C4	C5	C6	177.8°	179.8°
C9	C4	N3	C2	176.9°	179.6°
C8	N7	C5	HN7	180.0°	180.0°
C8	N7	C5	C4	0.6°	0.3°
C8	N7	C5	C6	177.4°	180.0°
H8	C8	N7	C5	179.7°	180.0°
H8	C8	N7	HN7	0.3°	0.0°
N7	C5	C4	C6	178.5°	179.7°
N7	C5	C4	N3	178.5°	179.7°
N7	C5	C6	N1	178.1°	180.0°
N7	C5	C6	O6	1.7°	0.1°
HN7	N7	C5	C4	179.3°	179.8°
HN7	N7	C5	C6	2.6°	0.1°
C5	C4	N3	C2	0.3°	0.6°
C4	C5	C6	N1	0.2°	0.3°
C4	C5	C6	O6	176.2°	179.8°
C6	C5	C4	N3	0.1°	0.6°
C5	C6	N1	C2	0.5°	0.1°
C5	C6	N1	O6	176.5°	179.9°
C5	C6	N1	HN1	179.5°	180.0°
C4	N3	C2	N1	0.6°	0.3°
C4	N3	C2	H2	179.4°	179.7°
N3	C2	N1	H2	180.0°	179.9°
N3	C2	N1	C6	0.8°	0.1°
N3	C2	N1	HN1	179.2°	180.0°
C2	N1	C6	HN1	180.0°	180.0°
C2	N1	C6	O6	176.0°	180.0°
H2	C2	N1	C6	179.3°	180.0°
H2	C2	N1	HN1	0.7°	0.0°
HN1	N1	C6	O6	4.1°	0.0°

Definition date:	2005-08-04
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB
Derived from:	2AI2