Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

P13

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.39Å1.42ÅAromatic
C1C6sing1.38Å1.42ÅAromatic
C1H1sing1.08Å1.07Å
C2C3sing1.39Å1.42ÅAromatic
C2C51sing1.48Å1.40ÅAromatic
C3C4doub1.38Å1.42ÅAromatic
C3H3sing1.08Å1.07Å
C4C5sing1.39Å1.43ÅAromatic
C4CA1sing1.51Å1.54Å
C5C6doub1.39Å1.42ÅAromatic
C5Osing1.36Å1.44Å
C6H6sing1.08Å1.08Å
NCBsing1.47Å1.48Å
NHN1Asing7.34Å1.03Å
NHN2sing1.01Å1.03Å
CBCAsing1.53Å1.53Å
CBHB1sing1.09Å1.08Å
CBHB2sing1.09Å1.08Å
CACsing1.53Å1.53Å
CAHA1sing1.09Å1.08Å
CAHA2sing1.09Å1.08Å
COsing1.43Å1.44Å
CHC1sing1.09Å1.08Å
CHC2sing1.09Å1.08Å
CA1NBsing1.47Å1.48Å
CA1HA11sing1.09Å1.08Å
CA1HA12sing1.09Å1.08Å
NBCGsing1.47Å1.49Å
NBHB11sing1.90Å1.03Å
CGCDsing1.53Å1.53Å
CGHG1sing1.09Å1.08Å
CGHG2sing1.09Å1.08Å
CDNEsing1.47Å1.48Å
CDHD1sing1.09Å1.08Å
CDHD2sing1.09Å1.08Å
NECH1sing1.47Å1.49Å
NECH2sing1.47Å1.49Å
CH1CI1sing1.53Å1.54Å
CH1HH11sing1.09Å1.08Å
CH1HH12sing1.09Å1.08Å
CI1NJsing1.47Å1.49Å
CI1HI11sing1.09Å1.08Å
CI1HI12sing1.09Å1.08Å
NJCI2sing1.47Å1.49Å
NJHJ1sing8.25Å1.03Å
CI2CH2sing1.53Å1.54Å
CI2HI21sing1.09Å1.08Å
CI2HI22sing1.09Å1.08Å
CH2HH21sing1.09Å1.08Å
CH2HH22sing1.09Å1.08Å
N1C21sing1.37Å1.41ÅAromatic
N1C81sing1.38Å1.39ÅAromatic
N1HN1sing0.97Å0.98Å
C21C31doub1.34Å1.41ÅAromatic
C21H2sing1.08Å1.08Å
C31C91sing1.47Å1.38ÅAromatic
C31H31sing1.08Å1.08Å
C41C51doub1.39Å1.42ÅAromatic
C41C91sing1.39Å1.43ÅAromatic
C41H4sing1.08Å1.08Å
C51C61sing1.40Å1.42ÅAromatic
C61C71doub1.36Å1.42ÅAromatic
C61H61sing1.08Å1.08Å
C71C81sing1.39Å1.43ÅAromatic
C71H7sing1.08Å1.08Å
C81C91doub1.41Å1.41ÅAromatic
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C6120.3°119.9°
C2C1H1119.5°120.0°
C1C2C3119.9°119.9°
C1C2C51119.6°120.1°
C6C1H1120.2°120.0°
C1C6C5120.1°120.1°
C1C6H6119.9°120.0°
C3C2C51120.5°120.0°
C2C3C4120.2°119.9°
C2C3H3120.0°120.0°
C2C51C41120.0°120.0°
C2C51C61120.1°119.9°
C4C3H3119.8°120.1°
C3C4C5119.8°120.1°
C3C4CA1119.3°120.0°
C5C4CA1120.9°119.9°
C4C5C6119.7°120.1°
C4C5O120.4°119.9°
C4CA1NB110.4°109.5°
C4CA1HA11109.4°109.5°
C4CA1HA12109.2°109.5°
C6C5O119.9°120.0°
C5C6H6120.0°119.9°
C5OC110.3°106.8°
CBNHN1A109.5°34.7°
CBNHN2109.5°106.7°
NCBCA109.4°109.5°
NCBHB1109.5°109.4°
NCBHB2109.5°109.5°
HN1ANHN2109.4°96.9°
CACBHB1109.5°109.5°
CACBHB2109.5°109.5°
CBCAC109.5°109.5°
CBCAHA1109.5°109.4°
CBCAHA2109.5°109.4°
HB1CBHB2109.5°109.4°
CCAHA1109.4°109.5°
CCAHA2109.5°109.4°
CACO109.4°109.5°
CACHC1109.3°109.5°
CACHC2109.5°109.4°
HA1CAHA2109.4°109.5°
OCHC1109.7°109.5°
OCHC2109.5°109.5°
HC1CHC2109.4°109.5°
NBCA1HA11109.5°109.4°
NBCA1HA12109.0°109.5°
CA1NBCG109.7°106.7°
CA1NBHB11109.4°53.3°
HA11CA1HA12109.3°109.5°
CGNBHB11109.6°159.0°
NBCGCD109.8°109.5°
NBCGHG1109.3°109.5°
NBCGHG2109.7°109.5°
CDCGHG1109.4°109.5°
CDCGHG2109.4°109.4°
CGCDNE109.4°109.5°
CGCDHD1109.5°109.4°
CGCDHD2109.5°109.4°
HG1CGHG2109.3°109.5°
NECDHD1109.4°109.5°
NECDHD2109.5°109.5°
CDNECH1109.3°106.7°
CDNECH2109.4°106.7°
HD1CDHD2109.5°109.5°
CH1NECH2110.4°106.9°
NECH1CI1109.4°109.6°
NECH1HH11109.5°109.4°
NECH1HH12109.4°109.4°
NECH2CI2109.5°109.7°
NECH2HH21109.5°109.4°
NECH2HH22109.5°109.4°
CI1CH1HH11109.5°109.4°
CI1CH1HH12109.5°109.5°
CH1CI1NJ109.4°109.6°
CH1CI1HI11109.5°109.4°
CH1CI1HI12109.4°109.4°
HH11CH1HH12109.5°109.4°
NJCI1HI11109.5°109.5°
NJCI1HI12109.5°109.4°
CI1NJCI2110.5°106.9°
CI1NJHJ1109.2°75.4°
HI11CI1HI12109.4°109.4°
CI2NJHJ1109.3°52.2°
NJCI2CH2109.5°109.7°
NJCI2HI21109.5°109.5°
NJCI2HI22109.5°109.4°
CH2CI2HI21109.5°109.4°
CH2CI2HI22109.4°109.4°
CI2CH2HH21109.4°109.5°
CI2CH2HH22109.4°109.5°
HI21CI2HI22109.4°109.4°
HH21CH2HH22109.5°109.4°
C21N1C81104.2°109.9°
C21N1HN1127.9°125.1°
N1C21C31110.9°110.0°
N1C21H2123.1°125.0°
C81N1HN1127.9°125.0°
N1C81C71129.5°133.3°
N1C81C91110.4°107.1°
C31C21H2125.9°125.0°
C21C31C91105.9°107.0°
C21C31H31126.8°126.5°
C91C31H31127.3°126.5°
C31C91C41131.4°133.9°
C31C91C81108.5°106.1°
C51C41C91119.9°119.4°
C51C41H4120.1°120.2°
C41C51C61119.9°120.1°
C91C41H4120.0°120.4°
C41C91C81120.1°120.0°
C51C61C71120.0°120.7°
C51C61H61120.0°119.6°
C71C61H61119.9°119.7°
C61C71C81119.9°120.2°
C61C71H7120.0°119.9°
C81C71H7120.0°119.9°
C71C81C91120.1°119.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C6H1179.4°179.9°
C1C2C3C51179.8°179.9°
C1C2C3C40.1°0.3°
C1C2C3H3179.7°179.9°
C2C1C6C50.3°0.1°
C2C1C6H6179.3°180.0°
C1C2C51C4164.1°40.0°
C1C2C51C61115.6°140.3°
C6C1C2C30.5°0.1°
C6C1C2C51179.3°180.0°
C1C6C5C40.4°0.3°
C1C6C5H6179.6°180.0°
C1C6C5O179.4°180.0°
H1C1C2C3179.9°180.0°
H1C1C2C510.1°0.1°
H1C1C6C5179.7°180.0°
H1C1C6H60.1°0.0°
C2C3C4H3179.8°179.8°
C2C3C4C50.9°0.5°
C2C3C4CA1179.9°179.9°
C3C2C51C41116.1°139.9°
C3C2C51C6164.2°39.8°
C51C2C3C4179.9°179.8°
C51C2C3H30.1°0.0°
C2C51C41C61179.7°179.7°
C2C51C41C91178.9°179.7°
C2C51C41H40.2°0.0°
C2C51C61C71179.6°180.0°
C2C51C61H610.1°0.0°
C3C4C5CA1179.0°179.6°
C3C4C5C61.1°0.5°
C3C4C5O178.8°179.7°
C3C4CA1NB151.5°100.0°
C3C4CA1HA1188.0°19.9°
C3C4CA1HA1231.6°140.0°
H3C3C4C5178.9°179.8°
H3C3C4CA10.1°0.2°
C4C5C6O179.9°179.8°
C4C5C6H6179.9°179.8°
C4C5OC116.1°179.8°
C5C4CA1NB29.5°79.6°
C5C4CA1HA1191.0°160.5°
C5C4CA1HA12149.4°40.5°
CA1C4C5C6179.9°179.9°
CA1C4C5O0.2°0.2°
C4CA1NBHA11120.5°120.0°
C4CA1NBHA12120.0°120.0°
C4CA1HA11HA12119.6°120.0°
C4CA1NBCG167.3°180.0°
C4CA1NBHB1147.0°7.3°
C6C5OC64.0°0.0°
OC5C6H60.2°0.0°
C5OCCA161.6°180.0°
C5OCHC141.7°60.0°
C5OCHC278.4°60.0°
CBNHN1AHN2120.0°109.4°
NCBCAHB1119.9°120.0°
NCBCAHB2120.0°120.0°
NCBHB1HB2120.0°120.0°
NCBCAC169.4°180.0°
NCBCAHA170.6°60.0°
NCBCAHA249.3°60.0°
HN1ANCBCA176.1°11.5°
HN1ANCBHB156.2°108.5°
HN1ANCBHB263.9°131.6°
HN2NCBCA64.0°66.2°
HN2NCBHB1176.1°173.8°
HN2NCBHB256.0°53.8°
CACBHB1HB2120.0°120.0°
CBCACHA1120.0°120.0°
CBCACHA2120.1°119.9°
CBCAHA1HA2120.0°120.0°
CBCACO67.1°180.0°
CBCACHC1172.8°60.0°
CBCACHC252.9°60.0°
HB1CBCAC70.6°60.0°
HB1CBCAHA149.4°180.0°
HB1CBCAHA2169.3°60.0°
HB2CBCAC49.4°60.0°
HB2CBCAHA1169.4°60.0°
HB2CBCAHA270.6°179.9°
CCAHA1HA2120.0°120.0°
CACOHC1119.9°120.0°
CACOHC2120.0°119.9°
CACHC1HC2119.9°119.9°
HA1CACO172.9°60.0°
HA1CACHC152.7°180.0°
HA1CACHC267.1°60.0°
HA2CACO53.0°60.1°
HA2CACHC167.2°60.0°
HA2CACHC2173.0°180.0°
OCHC1HC2120.2°120.0°
NBCA1HA11HA12119.4°120.0°
CA1NBCGHB11120.2°16.7°
CA1NBCGCD89.5°180.0°
CA1NBCGHG1150.5°60.0°
CA1NBCGHG230.7°60.0°
HA11CA1NBCG72.3°60.0°
HA11CA1NBHB11167.4°112.6°
HA12CA1NBCG47.3°60.0°
HA12CA1NBHB1173.0°127.4°
NBCGCDHG1119.9°120.0°
NBCGCDHG2120.4°120.0°
NBCGHG1HG2120.0°120.0°
NBCGCDNE105.7°180.0°
NBCGCDHD1134.4°59.9°
NBCGCDHD214.4°60.0°
HB11NBCGCD30.6°163.3°
HB11NBCGHG189.4°43.3°
HB11NBCGHG2150.8°76.7°
CDCGHG1HG2119.8°120.0°
CGCDNEHD1120.0°120.0°
CGCDNEHD2120.1°120.0°
CGCDHD1HD2120.1°119.9°
CGCDNECH173.1°170.0°
CGCDNECH2165.9°56.0°
HG1CGCDNE14.2°60.0°
HG1CGCDHD1105.7°180.0°
HG1CGCDHD2134.3°60.0°
HG2CGCDNE133.9°60.0°
HG2CGCDHD114.0°60.0°
HG2CGCDHD2106.0°180.0°
NECDHD1HD2120.0°120.1°
CDNECH1CH2120.3°113.9°
CDNECH1CI1179.8°175.1°
CDNECH1HH1159.8°55.0°
CDNECH1HH1260.2°64.8°
CDNECH2CI2179.6°175.1°
CDNECH2HH2160.4°64.8°
CDNECH2HH2259.7°55.0°
HD1CDNECH146.8°50.1°
HD1CDNECH274.2°64.0°
HD2CDNECH1166.8°70.0°
HD2CDNECH245.8°176.0°
NECH1CI1HH11120.0°120.0°
NECH1CI1HH12119.9°120.1°
NECH1HH11HH12120.0°119.9°
NECH1CI1NJ58.9°62.9°
NECH1CI1HI1161.1°177.0°
NECH1CI1HI12178.9°57.1°
CH1NECH2CI259.3°61.2°
CH1NECH2HH21179.3°178.7°
CH1NECH2HH2260.6°58.9°
CH2NECH1CI159.5°61.2°
CH2NECH1HH1160.5°58.9°
CH2NECH1HH12179.5°178.7°
NECH2CI2NJ58.7°62.9°
NECH2CI2HH21119.9°120.1°
NECH2CI2HH22120.0°120.0°
NECH2CI2HI21178.8°177.0°
NECH2CI2HI2261.3°57.1°
NECH2HH21HH22120.1°119.8°
CI1CH1HH11HH12120.1°119.9°
CH1CI1NJHI11120.1°120.1°
CH1CI1NJHI12120.0°120.0°
CH1CI1HI11HI12120.0°119.9°
CH1CI1NJCI259.5°61.2°
CH1CI1NJHJ1179.7°19.1°
HH11CH1CI1NJ61.0°57.1°
HH11CH1CI1HI11178.9°63.0°
HH11CH1CI1HI1258.9°177.1°
HH12CH1CI1NJ178.9°177.0°
HH12CH1CI1HI1158.9°56.9°
HH12CH1CI1HI1261.1°62.9°
NJCI1HI11HI12120.0°120.0°
CI1NJCI2HJ1120.2°55.2°
CI1NJCI2CH259.4°61.2°
CI1NJCI2HI21179.4°178.7°
CI1NJCI2HI2260.6°58.8°
HI11CI1NJCI260.6°178.7°
HI11CI1NJHJ159.7°139.2°
HI12CI1NJCI2179.4°58.8°
HI12CI1NJHJ160.3°100.9°
NJCI2CH2HI21120.1°120.1°
NJCI2CH2HI22120.0°120.0°
NJCI2HI21HI22120.0°119.9°
NJCI2CH2HH21178.7°177.0°
NJCI2CH2HH2261.3°57.1°
HJ1NJCI2CH2179.5°6.0°
HJ1NJCI2HI2160.4°126.1°
HJ1NJCI2HI2259.5°114.0°
CH2CI2HI21HI22119.9°119.9°
CI2CH2HH21HH22119.9°119.9°
HI21CI2CH2HH2161.2°56.9°
HI21CI2CH2HH2258.8°63.0°
HI22CI2CH2HH2158.6°63.0°
HI22CI2CH2HH22178.6°177.1°
C21N1C81HN1179.5°180.0°
N1C21C31H2179.8°180.0°
N1C21C31C910.7°0.0°
N1C21C31H31179.8°180.0°
C21N1C81C71179.5°180.0°
C21N1C81C910.4°0.0°
C81N1C21C310.7°0.0°
C81N1C21H2179.5°180.0°
N1C81C91C310.0°0.0°
N1C81C91C41180.0°179.8°
N1C81C71C61179.3°180.0°
N1C81C71C91179.9°179.9°
N1C81C71H70.0°0.0°
HN1N1C21C31179.8°180.0°
HN1N1C21H20.0°0.0°
HN1N1C81C710.0°0.1°
HN1N1C81C91179.9°180.0°
C21C31C91H31179.5°179.9°
C21C31C91C41179.5°179.7°
C21C31C91C810.4°0.0°
H2C21C31C91179.5°180.0°
H2C21C31H310.0°0.0°
C31C91C41C51179.2°179.8°
C31C91C41C81179.9°179.7°
C31C91C41H40.1°0.0°
C31C91C81C71179.9°180.0°
H31C31C91C410.0°0.3°
H31C31C91C81179.9°179.9°
C51C41C91H4179.1°179.8°
C41C51C61C710.1°0.3°
C41C51C61H61179.7°179.7°
C51C41C91C810.7°0.5°
C91C41C51C610.7°0.5°
C41C91C81C710.0°0.3°
H4C41C51C61179.8°179.7°
H4C41C91C81179.8°179.7°
C51C61C71H61179.6°180.0°
C51C61C71C810.5°0.0°
C51C61C71H7179.8°180.0°
C61C71C81H7179.3°180.0°
C61C71C81C910.6°0.0°
H61C61C71C81179.1°180.0°
H61C61C71H70.2°0.0°
H7C71C81C91179.9°180.0°

247947

PDB entries from 2026-01-21

PDB statisticsPDBj update infoContact PDBjnumon