P0M
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C6 | C5 | doub | 1.36Å | 1.41Å | Aromatic |
C6 | C7 | sing | 1.39Å | 1.41Å | Aromatic |
O3 | C7 | sing | 1.36Å | 1.37Å | |
C5 | C4A | sing | 1.40Å | 1.37Å | Aromatic |
C7 | C8 | doub | 1.38Å | 1.38Å | Aromatic |
N | CA | sing | 1.47Å | 1.50Å | |
CB | CA | sing | 1.53Å | 1.54Å | |
CB | CG | sing | 1.51Å | 1.53Å | |
C4A | CG | sing | 1.46Å | 1.49Å | |
C4A | C8A | doub | 1.41Å | 1.49Å | Aromatic |
CA | C | sing | 1.51Å | 1.47Å | |
C8 | C8A | sing | 1.39Å | 1.40Å | Aromatic |
CG | C3 | doub | 1.36Å | 1.38Å | |
C8A | O1 | sing | 1.35Å | 1.34Å | |
C | OXT | doub | 1.21Å | 1.26Å | |
C | O | sing | 1.34Å | 1.27Å | |
C3 | C2 | sing | 1.41Å | 1.42Å | |
O1 | C2 | sing | 1.34Å | 1.37Å | |
C2 | O2 | doub | 1.22Å | 1.22Å | |
C5 | H1 | sing | 1.08Å | 1.08Å | |
C6 | H2 | sing | 1.08Å | 1.08Å | |
C8 | H3 | sing | 1.08Å | 1.08Å | |
C3 | H4 | sing | 1.08Å | 1.08Å | |
O | H5 | sing | 0.97Å | 0.95Å | |
N | H6 | sing | 1.01Å | 1.00Å | |
N | H7 | sing | 1.01Å | 1.00Å | |
CB | H9 | sing | 1.09Å | 1.10Å | |
CB | H10 | sing | 1.09Å | 1.10Å | |
CA | H11 | sing | 1.09Å | 1.10Å | |
O3 | H12 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C5 | C6 | C7 | 119.4° | 120.4° |
C6 | C5 | C4A | 120.7° | 119.8° |
C6 | C5 | H1 | 119.7° | 120.1° |
C5 | C6 | H2 | 120.3° | 119.7° |
C6 | C7 | O3 | 116.9° | 119.7° |
C6 | C7 | C8 | 121.6° | 120.6° |
C7 | C6 | H2 | 120.3° | 119.8° |
O3 | C7 | C8 | 121.5° | 119.7° |
C7 | O3 | H12 | 109.5° | 114.0° |
C5 | C4A | CG | 125.4° | 121.0° |
C5 | C4A | C8A | 120.2° | 120.0° |
C4A | C5 | H1 | 119.7° | 120.1° |
C7 | C8 | C8A | 120.9° | 119.8° |
C7 | C8 | H3 | 119.5° | 120.2° |
N | CA | CB | 110.5° | 109.5° |
N | CA | C | 110.4° | 109.5° |
CA | N | H6 | 109.5° | 111.0° |
CA | N | H7 | 109.4° | 111.0° |
N | CA | H11 | 107.9° | 109.4° |
CA | CB | CG | 109.5° | 109.5° |
CB | CA | C | 112.1° | 109.5° |
CA | CB | H9 | 109.5° | 109.4° |
CA | CB | H10 | 109.4° | 109.5° |
CB | CA | H11 | 107.5° | 109.4° |
CB | CG | C4A | 116.8° | 120.9° |
CB | CG | C3 | 123.2° | 120.9° |
CG | CB | H9 | 109.5° | 109.5° |
CG | CB | H10 | 109.4° | 109.5° |
CG | C4A | C8A | 114.3° | 119.0° |
C4A | CG | C3 | 120.0° | 118.2° |
C4A | C8A | C8 | 117.1° | 119.4° |
C4A | C8A | O1 | 121.1° | 119.9° |
CA | C | OXT | 117.0° | 120.0° |
CA | C | O | 122.3° | 120.0° |
C | CA | H11 | 108.3° | 109.5° |
C8 | C8A | O1 | 121.5° | 120.7° |
C8A | C8 | H3 | 119.6° | 120.1° |
CG | C3 | C2 | 121.7° | 119.9° |
CG | C3 | H4 | 119.1° | 120.1° |
C8A | O1 | C2 | 123.5° | 121.5° |
OXT | C | O | 120.8° | 120.0° |
C | O | H5 | 109.5° | 116.9° |
C3 | C2 | O1 | 119.0° | 121.7° |
C3 | C2 | O2 | 122.7° | 119.2° |
C2 | C3 | H4 | 119.2° | 120.1° |
O1 | C2 | O2 | 118.1° | 119.2° |
H6 | N | H7 | 109.5° | 110.9° |
H9 | CB | H10 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C5 | C6 | C7 | H2 | 180.0° | 180.0° |
C5 | C6 | C7 | O3 | 178.9° | 180.0° |
C6 | C5 | C4A | H1 | 180.0° | 179.7° |
C5 | C6 | C7 | C8 | 0.1° | 0.0° |
C6 | C5 | C4A | CG | 178.2° | 179.6° |
C6 | C5 | C4A | C8A | 2.9° | 0.0° |
C6 | C7 | O3 | C8 | 178.8° | 180.0° |
C7 | C6 | C5 | C4A | 0.4° | 0.0° |
C6 | C7 | C8 | C8A | 2.1° | 0.0° |
C7 | C6 | C5 | H1 | 179.6° | 179.7° |
C6 | C7 | C8 | H3 | 178.0° | 180.0° |
C6 | C7 | O3 | H12 | 180.0° | 89.9° |
O3 | C7 | C8 | C8A | 176.7° | 180.0° |
O3 | C7 | C6 | H2 | 1.1° | 0.0° |
O3 | C7 | C8 | H3 | 3.3° | 0.0° |
C5 | C4A | CG | CB | 3.7° | 0.3° |
C5 | C4A | CG | C8A | 175.5° | 179.7° |
C5 | C4A | C8A | C8 | 4.8° | 0.0° |
C5 | C4A | CG | C3 | 179.7° | 179.7° |
C5 | C4A | C8A | O1 | 178.8° | 179.9° |
C4A | C5 | C6 | H2 | 179.5° | 180.0° |
C7 | C8 | C8A | C4A | 4.4° | 0.0° |
C7 | C8 | C8A | H3 | 180.0° | 180.0° |
C7 | C8 | C8A | O1 | 178.3° | 179.9° |
C8 | C7 | C6 | H2 | 180.0° | 180.0° |
C8 | C7 | O3 | H12 | 1.2° | 90.0° |
N | CA | CB | C | 123.6° | 120.0° |
N | CA | CB | H11 | 117.5° | 119.9° |
N | CA | CB | CG | 172.4° | 65.0° |
N | CA | C | H11 | 118.0° | 120.0° |
N | CA | C | OXT | 133.6° | 20.1° |
N | CA | C | O | 46.7° | 160.0° |
CA | N | H6 | H7 | 120.0° | 123.9° |
N | CA | CB | H9 | 67.5° | 175.0° |
N | CA | CB | H10 | 52.5° | 55.0° |
CA | CB | CG | H9 | 120.0° | 120.0° |
CA | CB | CG | H10 | 120.0° | 120.0° |
CA | CB | CG | C4A | 73.1° | 85.6° |
CB | CA | C | H11 | 118.4° | 120.0° |
CA | CB | CG | C3 | 103.4° | 95.0° |
CB | CA | C | OXT | 102.8° | 100.0° |
CB | CA | C | O | 76.9° | 79.9° |
CB | CA | N | H6 | 180.0° | 60.0° |
CB | CA | N | H7 | 60.0° | 63.9° |
CA | CB | H9 | H10 | 120.0° | 120.0° |
CB | CG | C4A | C3 | 176.6° | 179.4° |
CB | CG | C4A | C8A | 179.2° | 180.0° |
CG | CB | CA | C | 48.9° | 175.0° |
CB | CG | C3 | C2 | 179.7° | 180.0° |
CB | CG | C3 | H4 | 0.3° | 0.3° |
CG | CB | H9 | H10 | 120.0° | 120.0° |
CG | CB | CA | H11 | 70.1° | 55.0° |
CG | C4A | C8A | C8 | 179.4° | 179.7° |
CG | C4A | C8A | O1 | 5.4° | 0.3° |
C4A | CG | C3 | C2 | 3.9° | 0.6° |
CG | C4A | C5 | H1 | 1.9° | 0.0° |
C4A | CG | C3 | H4 | 176.1° | 179.7° |
C4A | CG | CB | H9 | 46.9° | 34.4° |
C4A | CG | CB | H10 | 166.9° | 154.4° |
C4A | C8A | C8 | O1 | 174.0° | 179.9° |
C8A | C4A | CG | C3 | 4.2° | 0.6° |
C4A | C8A | O1 | C2 | 6.6° | 0.0° |
C8A | C4A | C5 | H1 | 177.1° | 179.7° |
C4A | C8A | C8 | H3 | 175.7° | 180.0° |
CA | C | OXT | O | 179.7° | 179.9° |
CA | C | O | H5 | 179.7° | 180.0° |
C | CA | N | H6 | 55.5° | 60.1° |
C | CA | N | H7 | 64.6° | 176.1° |
C | CA | CB | H9 | 168.9° | 55.0° |
C | CA | CB | H10 | 71.1° | 65.0° |
C8 | C8A | O1 | C2 | 179.7° | 180.0° |
CG | C3 | C2 | H4 | 180.0° | 179.7° |
CG | C3 | C2 | O1 | 4.5° | 0.3° |
CG | C3 | C2 | O2 | 179.5° | 179.7° |
C3 | CG | CB | H9 | 136.6° | 145.0° |
C3 | CG | CB | H10 | 16.6° | 25.0° |
C8A | O1 | C2 | C3 | 5.9° | 0.0° |
C8A | O1 | C2 | O2 | 177.9° | 179.9° |
O1 | C8A | C8 | H3 | 1.7° | 0.0° |
OXT | C | O | H5 | 0.0° | 0.1° |
OXT | C | CA | H11 | 15.6° | 140.1° |
O | C | CA | H11 | 164.7° | 40.1° |
C3 | C2 | O1 | O2 | 176.2° | 180.0° |
O1 | C2 | C3 | H4 | 175.5° | 180.0° |
O2 | C2 | C3 | H4 | 0.5° | 0.0° |
H1 | C5 | C6 | H2 | 0.5° | 0.3° |
H6 | N | CA | H11 | 62.8° | 179.9° |
H7 | N | CA | H11 | 177.2° | 56.0° |
H9 | CB | CA | H11 | 49.9° | 65.0° |
H10 | CB | CA | H11 | 169.9° | 175.0° |