P0D
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O1P | P1 | doub | 1.48Å | 1.47Å | |
| C2 | C1 | sing | 1.53Å | 1.53Å | |
| N1 | C1 | sing | 1.47Å | 1.45Å | |
| C1 | P1 | sing | 1.82Å | 1.82Å | |
| O1 | C | doub | 1.21Å | 1.26Å | |
| P1 | O2P | sing | 1.61Å | 1.63Å | |
| P1 | C1' | sing | 1.82Å | 1.82Å | |
| O2 | C | sing | 1.34Å | 1.27Å | |
| C | C2' | sing | 1.51Å | 1.51Å | |
| O2P | P2 | sing | 1.61Å | 1.61Å | |
| O5P | P2 | doub | 1.48Å | 1.51Å | |
| C1' | C2' | sing | 1.53Å | 1.53Å | |
| C2' | C3' | sing | 1.53Å | 1.52Å | |
| P2 | O3P | sing | 1.61Å | 1.52Å | |
| P2 | O4P | sing | 1.61Å | 1.50Å | |
| C3' | C31 | sing | 1.51Å | 1.52Å | |
| C33 | C31 | doub | 1.38Å | 1.39Å | Aromatic |
| C33 | C35 | sing | 1.38Å | 1.39Å | Aromatic |
| C31 | C32 | sing | 1.38Å | 1.40Å | Aromatic |
| C35 | C36 | doub | 1.38Å | 1.39Å | Aromatic |
| C32 | C34 | doub | 1.38Å | 1.39Å | Aromatic |
| C36 | C34 | sing | 1.38Å | 1.39Å | Aromatic |
| O2 | H1 | sing | 0.97Å | 0.95Å | |
| C2' | H2 | sing | 1.09Å | 1.10Å | |
| C1' | H3 | sing | 1.09Å | 1.10Å | |
| C1' | H4 | sing | 1.09Å | 1.10Å | |
| C2 | H5 | sing | 1.09Å | 1.10Å | |
| C2 | H6 | sing | 1.09Å | 1.10Å | |
| C2 | H7 | sing | 1.09Å | 1.10Å | |
| C1 | H8 | sing | 1.09Å | 1.10Å | |
| N1 | H9 | sing | 1.01Å | 1.00Å | |
| N1 | H10 | sing | 1.01Å | 1.00Å | |
| O4P | H12 | sing | 0.97Å | 0.95Å | |
| O3P | H13 | sing | 0.97Å | 0.95Å | |
| C3' | H14 | sing | 1.09Å | 1.10Å | |
| C3' | H15 | sing | 1.09Å | 1.10Å | |
| C33 | H16 | sing | 1.08Å | 1.08Å | |
| C35 | H17 | sing | 1.08Å | 1.08Å | |
| C36 | H18 | sing | 1.08Å | 1.08Å | |
| C34 | H19 | sing | 1.08Å | 1.08Å | |
| C32 | H20 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P1 | C1 | 109.4° | 109.5° |
| O1P | P1 | O2P | 108.1° | 109.5° |
| O1P | P1 | C1' | 109.5° | 109.5° |
| C2 | C1 | N1 | 109.7° | 109.5° |
| C2 | C1 | P1 | 108.6° | 109.5° |
| C1 | C2 | H5 | 109.5° | 109.5° |
| C1 | C2 | H6 | 109.5° | 109.5° |
| C1 | C2 | H7 | 109.5° | 109.4° |
| C2 | C1 | H8 | 109.8° | 109.5° |
| N1 | C1 | P1 | 111.3° | 109.5° |
| N1 | C1 | H8 | 110.8° | 109.4° |
| C1 | N1 | H9 | 109.5° | 111.0° |
| C1 | N1 | H10 | 109.5° | 111.0° |
| C1 | P1 | O2P | 110.7° | 109.5° |
| C1 | P1 | C1' | 108.3° | 109.5° |
| P1 | C1 | H8 | 106.5° | 109.5° |
| O1 | C | O2 | 122.8° | 120.0° |
| O1 | C | C2' | 117.2° | 120.0° |
| O2P | P1 | C1' | 110.9° | 109.5° |
| P1 | O2P | P2 | 123.2° | 134.0° |
| P1 | C1' | C2' | 113.4° | 109.5° |
| P1 | C1' | H3 | 108.5° | 109.4° |
| P1 | C1' | H4 | 108.5° | 109.4° |
| O2 | C | C2' | 120.0° | 120.0° |
| C | O2 | H1 | 109.5° | 117.0° |
| C | C2' | C1' | 110.0° | 109.5° |
| C | C2' | C3' | 109.0° | 109.5° |
| C | C2' | H2 | 109.7° | 109.5° |
| O2P | P2 | O5P | 102.2° | 109.5° |
| O2P | P2 | O3P | 108.3° | 109.4° |
| O2P | P2 | O4P | 104.4° | 109.5° |
| O5P | P2 | O3P | 113.4° | 109.5° |
| O5P | P2 | O4P | 114.3° | 109.5° |
| C1' | C2' | C3' | 109.3° | 109.4° |
| C1' | C2' | H2 | 109.4° | 109.4° |
| C2' | C1' | H3 | 108.4° | 109.5° |
| C2' | C1' | H4 | 108.5° | 109.5° |
| C2' | C3' | C31 | 117.9° | 109.4° |
| C3' | C2' | H2 | 109.4° | 109.5° |
| C2' | C3' | H14 | 107.3° | 109.4° |
| C2' | C3' | H15 | 107.3° | 109.5° |
| O3P | P2 | O4P | 113.1° | 109.5° |
| P2 | O3P | H13 | 109.5° | 114.0° |
| P2 | O4P | H12 | 109.5° | 114.1° |
| C3' | C31 | C33 | 121.0° | 120.0° |
| C3' | C31 | C32 | 120.0° | 120.0° |
| C31 | C3' | H14 | 107.3° | 109.5° |
| C31 | C3' | H15 | 107.3° | 109.5° |
| C31 | C33 | C35 | 121.3° | 120.0° |
| C33 | C31 | C32 | 118.2° | 120.0° |
| C31 | C33 | H16 | 119.3° | 120.0° |
| C33 | C35 | C36 | 119.9° | 120.0° |
| C35 | C33 | H16 | 119.4° | 120.0° |
| C33 | C35 | H17 | 120.1° | 120.0° |
| C31 | C32 | C34 | 120.9° | 120.0° |
| C31 | C32 | H20 | 119.6° | 120.0° |
| C35 | C36 | C34 | 119.6° | 120.0° |
| C36 | C35 | H17 | 120.0° | 120.0° |
| C35 | C36 | H18 | 120.2° | 119.9° |
| C32 | C34 | C36 | 120.1° | 120.0° |
| C32 | C34 | H19 | 119.9° | 120.0° |
| C34 | C32 | H20 | 119.6° | 120.0° |
| C34 | C36 | H18 | 120.2° | 120.1° |
| C36 | C34 | H19 | 120.0° | 120.0° |
| H3 | C1' | H4 | 109.5° | 109.5° |
| H5 | C2 | H6 | 109.4° | 109.5° |
| H5 | C2 | H7 | 109.4° | 109.5° |
| H6 | C2 | H7 | 109.5° | 109.4° |
| H9 | N1 | H10 | 109.5° | 111.0° |
| H14 | C3' | H15 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P1 | C1 | C2 | 40.5° | 180.0° |
| O1P | P1 | C1 | N1 | 80.4° | 60.0° |
| O1P | P1 | C1 | O2P | 119.1° | 120.0° |
| O1P | P1 | C1 | C1' | 119.2° | 120.0° |
| O1P | P1 | O2P | C1' | 120.0° | 120.0° |
| O1P | P1 | O2P | P2 | 166.8° | 60.0° |
| O1P | P1 | C1' | C2' | 61.1° | 56.6° |
| O1P | P1 | C1' | H3 | 178.4° | 63.4° |
| O1P | P1 | C1' | H4 | 59.5° | 176.7° |
| O1P | P1 | C1 | H8 | 158.7° | 60.0° |
| C2 | C1 | N1 | P1 | 120.3° | 120.0° |
| C2 | C1 | N1 | H8 | 121.4° | 120.0° |
| C2 | C1 | P1 | H8 | 118.2° | 120.0° |
| C2 | C1 | P1 | O2P | 159.5° | 60.0° |
| C2 | C1 | P1 | C1' | 78.7° | 60.0° |
| C1 | C2 | H5 | H6 | 120.0° | 120.1° |
| C1 | C2 | H5 | H7 | 120.0° | 120.0° |
| C1 | C2 | H6 | H7 | 120.0° | 120.0° |
| C2 | C1 | N1 | H9 | 180.0° | 60.0° |
| C2 | C1 | N1 | H10 | 60.0° | 63.9° |
| N1 | C1 | P1 | H8 | 120.9° | 120.0° |
| N1 | C1 | P1 | O2P | 38.6° | 180.0° |
| N1 | C1 | P1 | C1' | 160.4° | 60.0° |
| N1 | C1 | C2 | H5 | 180.0° | 180.0° |
| N1 | C1 | C2 | H6 | 60.0° | 60.0° |
| N1 | C1 | C2 | H7 | 60.0° | 60.0° |
| C1 | N1 | H9 | H10 | 120.0° | 124.0° |
| C1 | P1 | O2P | C1' | 120.2° | 120.0° |
| C1 | P1 | O2P | P2 | 47.0° | 60.0° |
| C1 | P1 | C1' | C2' | 179.8° | 176.6° |
| C1 | P1 | C1' | H3 | 59.2° | 56.6° |
| C1 | P1 | C1' | H4 | 59.6° | 63.4° |
| P1 | C1 | C2 | H5 | 58.1° | 60.0° |
| P1 | C1 | C2 | H6 | 178.1° | 180.0° |
| P1 | C1 | C2 | H7 | 61.9° | 60.0° |
| P1 | C1 | N1 | H9 | 59.8° | 60.0° |
| P1 | C1 | N1 | H10 | 60.3° | 176.1° |
| O1 | C | O2 | C2' | 179.6° | 180.0° |
| O1 | C | C2' | C1' | 131.2° | 38.9° |
| O1 | C | C2' | C3' | 109.0° | 81.1° |
| O1 | C | O2 | H1 | 0.0° | 0.0° |
| O1 | C | C2' | H2 | 10.8° | 158.9° |
| P1 | O2P | P2 | O5P | 77.9° | 40.0° |
| O2P | P1 | C1' | C2' | 58.1° | 63.4° |
| P1 | O2P | P2 | O3P | 162.2° | 160.0° |
| P1 | O2P | P2 | O4P | 41.5° | 80.0° |
| O2P | P1 | C1' | H3 | 62.4° | 176.6° |
| O2P | P1 | C1' | H4 | 178.7° | 56.6° |
| O2P | P1 | C1 | H8 | 82.2° | 60.0° |
| P1 | C1' | C2' | C | 89.3° | 75.4° |
| C1' | P1 | O2P | P2 | 73.2° | 180.0° |
| P1 | C1' | C2' | H3 | 120.6° | 120.0° |
| P1 | C1' | C2' | H4 | 120.6° | 120.0° |
| P1 | C1' | C2' | C3' | 151.0° | 164.6° |
| P1 | C1' | C2' | H2 | 31.2° | 44.6° |
| P1 | C1' | H3 | H4 | 118.2° | 119.9° |
| C1' | P1 | C1 | H8 | 39.5° | 180.0° |
| O2 | C | C2' | C1' | 49.3° | 141.1° |
| O2 | C | C2' | C3' | 70.6° | 98.9° |
| O2 | C | C2' | H2 | 169.6° | 21.1° |
| C | C2' | C1' | C3' | 119.7° | 120.0° |
| C | C2' | C1' | H2 | 120.5° | 120.0° |
| C | C2' | C3' | H2 | 120.0° | 120.0° |
| C | C2' | C3' | C31 | 47.4° | 64.9° |
| C2' | C | O2 | H1 | 179.5° | 180.0° |
| C | C2' | C1' | H3 | 150.1° | 44.5° |
| C | C2' | C1' | H4 | 31.2° | 164.6° |
| C | C2' | C3' | H14 | 168.6° | 175.1° |
| C | C2' | C3' | H15 | 73.8° | 55.1° |
| O2P | P2 | O5P | O3P | 116.3° | 120.0° |
| O2P | P2 | O5P | O4P | 112.1° | 120.0° |
| O2P | P2 | O3P | O4P | 115.2° | 120.0° |
| O2P | P2 | O4P | H12 | 110.8° | 60.0° |
| O2P | P2 | O3P | H13 | 112.7° | 180.0° |
| O5P | P2 | O3P | O4P | 132.2° | 120.0° |
| O5P | P2 | O4P | H12 | 0.0° | 180.0° |
| O5P | P2 | O3P | H13 | 0.0° | 60.0° |
| C1' | C2' | C3' | H2 | 119.7° | 119.9° |
| C1' | C2' | C3' | C31 | 167.7° | 175.1° |
| C2' | C1' | H3 | H4 | 118.2° | 120.1° |
| C1' | C2' | C3' | H14 | 71.1° | 55.1° |
| C1' | C2' | C3' | H15 | 46.5° | 64.9° |
| C2' | C3' | C31 | H14 | 121.2° | 120.0° |
| C2' | C3' | C31 | H15 | 121.2° | 120.0° |
| C2' | C3' | C31 | C33 | 58.5° | 95.5° |
| C2' | C3' | C31 | C32 | 132.4° | 84.2° |
| C3' | C2' | C1' | H3 | 30.4° | 75.5° |
| C3' | C2' | C1' | H4 | 88.5° | 44.6° |
| C2' | C3' | H14 | H15 | 116.2° | 120.0° |
| O3P | P2 | O4P | H12 | 131.7° | 60.0° |
| O4P | P2 | O3P | H13 | 132.1° | 60.0° |
| C3' | C31 | C33 | C32 | 169.3° | 179.7° |
| C3' | C31 | C33 | C35 | 170.0° | 180.0° |
| C3' | C31 | C32 | C34 | 170.4° | 179.8° |
| C31 | C3' | C2' | H2 | 72.6° | 55.2° |
| C31 | C3' | H14 | H15 | 116.2° | 120.0° |
| C3' | C31 | C33 | H16 | 10.0° | 0.0° |
| C3' | C31 | C32 | H20 | 9.6° | 0.0° |
| C31 | C33 | C35 | H16 | 180.0° | 180.0° |
| C31 | C33 | C35 | C36 | 0.1° | 0.1° |
| C33 | C31 | C32 | C34 | 1.0° | 0.5° |
| C33 | C31 | C3' | H14 | 62.7° | 144.5° |
| C33 | C31 | C3' | H15 | 179.7° | 24.5° |
| C31 | C33 | C35 | H17 | 179.9° | 180.0° |
| C33 | C31 | C32 | H20 | 179.0° | 179.8° |
| C35 | C33 | C31 | C32 | 0.7° | 0.3° |
| C33 | C35 | C36 | H17 | 180.0° | 180.0° |
| C33 | C35 | C36 | C34 | 0.2° | 0.0° |
| C33 | C35 | C36 | H18 | 179.8° | 180.0° |
| C31 | C32 | C34 | H20 | 180.0° | 179.8° |
| C31 | C32 | C34 | C36 | 0.8° | 0.4° |
| C32 | C31 | C3' | H14 | 106.4° | 35.8° |
| C32 | C31 | C3' | H15 | 11.2° | 155.8° |
| C32 | C31 | C33 | H16 | 179.3° | 179.8° |
| C31 | C32 | C34 | H19 | 179.2° | 179.7° |
| C35 | C36 | C34 | C32 | 0.2° | 0.2° |
| C35 | C36 | C34 | H18 | 180.0° | 179.9° |
| C36 | C35 | C33 | H16 | 179.9° | 180.0° |
| C35 | C36 | C34 | H19 | 179.8° | 179.9° |
| C32 | C34 | C36 | H19 | 180.0° | 179.9° |
| C32 | C34 | C36 | H18 | 179.8° | 179.9° |
| C34 | C36 | C35 | H17 | 179.8° | 180.0° |
| C36 | C34 | C32 | H20 | 179.2° | 179.8° |
| H2 | C2' | C1' | H3 | 89.4° | 164.6° |
| H2 | C2' | C1' | H4 | 151.7° | 75.4° |
| H2 | C2' | C3' | H14 | 48.6° | 64.8° |
| H2 | C2' | C3' | H15 | 166.3° | 175.2° |
| H5 | C2 | H6 | H7 | 119.9° | 120.0° |
| H5 | C2 | C1 | H8 | 58.0° | 60.1° |
| H6 | C2 | C1 | H8 | 62.0° | 60.0° |
| H7 | C2 | C1 | H8 | 178.0° | 180.0° |
| H8 | C1 | N1 | H9 | 58.6° | 180.0° |
| H8 | C1 | N1 | H10 | 178.6° | 56.1° |
| H16 | C33 | C35 | H17 | 0.1° | 0.0° |
| H17 | C35 | C36 | H18 | 0.2° | 0.1° |
| H18 | C36 | C34 | H19 | 0.2° | 0.0° |
| H19 | C34 | C32 | H20 | 0.8° | 0.1° |
