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SummaryGeometryRelated PDB entries

OVV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O09C08doub1.22Å1.27Å
C08O10sing1.35Å1.25Å
C08C06sing1.48Å1.53Å
C07C06doub1.40Å1.40ÅAromatic
C07C02sing1.38Å1.39ÅAromatic
C06C05sing1.40Å1.41ÅAromatic
C01C02sing1.51Å1.52Å
C02C03doub1.38Å1.39ÅAromatic
C05C04doub1.38Å1.39ÅAromatic
C03C04sing1.38Å1.38ÅAromatic
C01H1sing1.09Å1.10Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C03H4sing1.08Å1.08Å
C04H5sing1.08Å1.08Å
C05H6sing1.08Å1.08Å
C07H7sing1.08Å1.08Å
O10H8sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O09C08O10118.4°120.0°
O09C08C06123.4°120.0°
O10C08C06118.2°120.0°
C08O10H8109.5°117.0°
C08C06C07121.2°120.2°
C08C06C05118.0°120.1°
C06C07C02117.4°119.8°
C07C06C05120.8°119.7°
C06C07H7121.3°120.1°
C07C02C01120.7°119.9°
C07C02C03121.1°120.2°
C02C07H7121.3°120.1°
C06C05C04120.8°119.8°
C06C05H6119.6°120.1°
C01C02C03118.2°119.9°
C02C01H1109.5°109.5°
C02C01H2109.4°109.5°
C02C01H3109.4°109.5°
C02C03C04122.0°120.3°
C02C03H4119.0°119.9°
C05C04C03117.8°120.2°
C05C04H5121.1°119.8°
C04C05H6119.6°120.1°
C04C03H4119.0°119.8°
C03C04H5121.1°120.0°
H1C01H2109.5°109.4°
H1C01H3109.5°109.5°
H2C01H3109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O09C08O10C06177.5°179.9°
O09C08C06C076.7°0.2°
O09C08C06C05172.1°180.0°
O09C08O10H80.0°0.0°
O10C08C06C07175.9°179.7°
O10C08C06C055.2°0.1°
C08C06C07C05178.8°179.8°
C08C06C07C02178.0°179.7°
C08C06C05C04180.0°180.0°
C08C06C05H60.0°0.0°
C08C06C07H72.0°0.2°
C06C08O10H8177.5°180.0°
C06C07C02H7180.0°179.5°
C06C07C02C01179.0°179.7°
C06C07C02C032.3°0.6°
C07C06C05C041.1°0.2°
C07C06C05H6178.9°179.8°
C02C07C06C050.9°0.5°
C07C02C01C03176.8°179.7°
C07C02C03C041.8°0.3°
C07C02C01H188.3°90.3°
C07C02C01H2151.7°29.7°
C07C02C01H331.7°149.7°
C07C02C03H4178.2°179.7°
C06C05C04H6180.0°180.0°
C06C05C04C031.7°0.0°
C06C05C04H5178.4°180.0°
C05C06C07H7179.1°180.0°
C01C02C03C04178.6°180.0°
C02C01H1H2120.0°120.0°
C02C01H1H3120.0°120.1°
C02C01H2H3120.0°120.0°
C01C02C03H41.4°0.0°
C01C02C07H71.0°0.2°
C02C03C04C050.2°0.0°
C02C03C04H4180.0°180.0°
C03C02C01H188.5°90.0°
C03C02C01H231.5°150.0°
C03C02C01H3151.5°30.0°
C02C03C04H5179.8°180.0°
C03C02C07H7177.7°180.0°
C05C04C03H5180.0°180.0°
C05C04C03H4179.8°180.0°
C03C04C05H6178.3°180.0°
H1C01H2H3120.0°119.9°
H4C03C04H50.2°0.0°
H5C04C05H61.7°0.0°

246704

PDB entries from 2025-12-24

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