Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

OVD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C8C7sing1.51Å1.57Å
NBDNBCsing1.29Å1.28ÅAromatic
NBDNBEdoub1.29Å1.23ÅAromatic
NBCCBBsing1.35Å1.33ÅAromatic
NBECBAsing1.34Å1.33ÅAromatic
O3C3sing1.43Å1.42Å
OAVCARsing1.43Å1.48Å
N2C7sing1.35Å1.35Å
N2C2sing1.46Å1.47Å
C7O7doub1.21Å1.24Å
C3C2sing1.53Å1.53Å
C3C4sing1.53Å1.51Å
CBBCBAdoub1.35Å1.33ÅAromatic
CBACAZsing1.51Å1.56Å
OAXCAZsing1.43Å1.40Å
OAXCAQsing1.43Å1.41Å
O4C4sing1.43Å1.42Å
O4CAUsing1.43Å1.41Å
CAPOANsing1.43Å1.43Å
CAPCAQsing1.53Å1.51Å
CAPCAUsing1.53Å1.51Å
C2C1sing1.53Å1.51Å
OATCAUsing1.43Å1.46Å
OATCASsing1.43Å1.43Å
CARCAQsing1.53Å1.52Å
CARCASsing1.53Å1.54Å
C4C5sing1.53Å1.51Å
CAFO1sing1.43Å1.45Å
CAFCAMsing1.53Å1.47Å
C1O1sing1.43Å1.43Å
C1O5sing1.43Å1.43Å
C5O5sing1.43Å1.43Å
C5C6sing1.53Å1.52Å
CASCAOsing1.53Å1.53Å
CAOOAWsing1.43Å1.44Å
CAYCAMsing1.53Å1.49Å
C6O6sing1.43Å1.43Å
C4H4sing1.09Å1.10Å
C5H5sing1.09Å1.10Å
C6H62sing1.09Å1.10Å
C6H61sing1.09Å1.10Å
C8H82sing1.09Å1.10Å
C8H81sing1.09Å1.10Å
C8H83sing1.09Å1.10Å
N2H22sing0.97Å1.00Å
C3H31sing1.09Å1.10Å
C1H1sing1.09Å1.10Å
C2H21sing1.09Å1.10Å
CAFHAFsing1.09Å1.10Å
CAFH63sing1.09Å1.10Å
CAMHAMsing1.09Å1.10Å
CAMH2sing1.09Å1.10Å
CAOHAOsing1.09Å1.10Å
CAOH64sing1.09Å1.10Å
CAPHAPsing1.09Å1.10Å
CAQHAQsing1.09Å1.10Å
CARHARsing1.09Å1.10Å
CASHASsing1.09Å1.10Å
CAUHAUsing1.09Å1.10Å
CAYH3sing1.09Å1.10Å
CAYHAYsing1.09Å1.10Å
CAYH65sing1.09Å1.10Å
CAZHAZsing1.09Å1.10Å
CAZH66sing1.09Å1.10Å
CBBHBBsing1.08Å1.08Å
NBCHBCsing0.97Å1.00Å
O3H32sing0.97Å0.95Å
O6H67sing0.97Å0.95Å
OANHANsing0.97Å0.95Å
OAVHAVsing0.97Å0.95Å
OAWHAWsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C8C7N2115.3°120.0°
C8C7O7121.7°120.0°
C7C8H82109.5°109.5°
C7C8H81109.4°109.5°
C7C8H83109.5°109.4°
NBCNBDNBE111.0°110.2°
NBDNBCCBB108.5°108.2°
NBDNBCHBC125.8°125.9°
NBDNBECBA108.1°108.9°
NBCCBBCBA104.9°106.2°
NBCCBBHBB127.6°126.9°
CBBNBCHBC125.8°125.9°
NBECBACBB107.5°106.5°
NBECBACAZ127.1°126.7°
O3C3C2108.3°109.6°
O3C3C4111.2°109.5°
O3C3H31110.3°109.6°
C3O3H32109.5°114.0°
OAVCARCAQ108.0°109.5°
OAVCARCAS113.1°109.5°
OAVCARHAR109.7°109.6°
CAROAVHAV109.5°114.0°
C7N2C2123.0°120.0°
N2C7O7123.1°120.0°
C7N2H22118.5°120.0°
N2C2C3107.8°109.5°
N2C2C1109.8°109.5°
C2N2H22118.5°120.0°
N2C2H21110.6°109.5°
C2C3C4109.3°109.0°
C3C2C1108.8°109.2°
C2C3H31108.7°109.6°
C3C2H21109.8°109.5°
C3C4O4109.4°109.5°
C3C4C5106.6°109.2°
C3C4H4110.2°109.5°
C4C3H31109.0°109.5°
CBBCBACAZ125.3°126.8°
CBACBBHBB127.5°126.9°
CBACAZOAX100.1°109.4°
CBACAZHAZ111.7°109.5°
CBACAZH66111.8°109.5°
CAZOAXCAQ105.4°114.0°
OAXCAZHAZ111.8°109.4°
OAXCAZH66111.8°109.5°
OAXCAQCAP108.1°109.5°
OAXCAQCAR111.9°109.6°
OAXCAQHAQ110.8°109.6°
C4O4CAU112.1°114.0°
O4C4C5109.0°109.5°
O4C4H4111.4°109.5°
O4CAUCAP106.0°109.5°
O4CAUOAT108.8°109.5°
O4CAUHAU111.0°109.5°
OANCAPCAQ109.2°109.5°
OANCAPCAU109.4°109.5°
OANCAPHAP109.8°109.5°
CAPOANHAN109.5°114.0°
CAQCAPCAU111.1°109.2°
CAPCAQCAR107.3°109.0°
CAQCAPHAP108.7°109.5°
CAPCAQHAQ109.4°109.5°
CAPCAUOAT111.2°109.4°
CAUCAPHAP108.6°109.6°
CAPCAUHAU109.5°109.5°
C2C1O1110.2°109.5°
C2C1O5111.8°109.4°
C2C1H1109.1°109.5°
C1C2H21110.0°109.6°
CAUOATCAS105.5°114.1°
OATCAUHAU110.2°109.4°
OATCASCAR110.0°109.4°
OATCASCAO112.2°109.4°
OATCASHAS109.3°109.5°
CAQCARCAS107.9°109.2°
CARCAQHAQ109.3°109.5°
CAQCARHAR109.2°109.5°
CARCASCAO109.3°109.5°
CASCARHAR108.9°109.5°
CARCASHAS107.9°109.5°
C4C5O5109.1°109.4°
C4C5C6111.6°109.5°
C5C4H4110.1°109.6°
C4C5H5109.5°109.5°
O1CAFCAM104.6°109.5°
CAFO1C1108.9°114.0°
O1CAFHAF110.7°109.5°
O1CAFH63110.7°109.5°
CAFCAMCAY121.4°109.5°
CAMCAFHAF110.7°109.5°
CAMCAFH63110.7°109.5°
CAFCAMHAM106.4°109.5°
CAFCAMH2106.4°109.5°
O1C1O5105.4°109.5°
O1C1H1110.1°109.5°
C1O5C5110.5°114.1°
O5C1H1110.2°109.5°
O5C5C6106.5°109.5°
O5C5H5110.7°109.4°
C5C6O6108.3°109.5°
C6C5H5109.4°109.5°
C5C6H62109.7°109.5°
C5C6H61109.7°109.4°
CASCAOOAW110.0°109.5°
CASCAOHAO109.3°109.4°
CASCAOH64109.3°109.5°
CAOCASHAS108.0°109.5°
OAWCAOHAO109.4°109.5°
OAWCAOH64109.3°109.5°
CAOOAWHAW109.5°114.0°
CAYCAMHAM106.4°109.5°
CAYCAMH2106.4°109.5°
CAMCAYH3109.5°109.5°
CAMCAYHAY109.5°109.5°
CAMCAYH65109.5°109.5°
O6C6H62109.8°109.5°
O6C6H61109.8°109.5°
C6O6H67109.5°114.0°
H62C6H61109.5°109.5°
H82C8H81109.5°109.5°
H82C8H83109.4°109.5°
H81C8H83109.5°109.5°
HAFCAFH63109.5°109.4°
HAMCAMH2109.5°109.4°
HAOCAOH64109.5°109.4°
H3CAYHAY109.4°109.4°
H3CAYH65109.5°109.4°
HAYCAYH65109.5°109.5°
HAZCAZH66109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C8C7N2O7179.3°180.0°
C8C7N2C2179.2°180.0°
C7C8H82H81120.0°120.0°
C7C8H82H83120.0°120.0°
C7C8H81H83120.0°120.0°
C8C7N2H220.8°0.0°
NBDNBCCBBHBC180.0°179.8°
NBCNBDNBECBA0.7°0.5°
NBDNBCCBBCBA0.6°0.1°
NBDNBCCBBHBB179.4°180.0°
NBENBDNBCCBB0.1°0.3°
NBDNBECBACBB1.1°0.4°
NBDNBECBACAZ179.1°179.9°
NBENBDNBCHBC179.9°179.8°
NBCCBBCBANBE1.0°0.2°
NBCCBBCBAHBB180.0°179.9°
NBCCBBCBACAZ179.0°179.9°
NBECBACBBCAZ178.1°179.7°
NBECBACAZOAX118.4°179.7°
NBECBACAZHAZ123.2°60.4°
NBECBACAZH660.1°59.7°
NBECBACBBHBB179.0°179.7°
O3C3C2N263.7°63.2°
O3C3C2C4121.3°119.9°
O3C3C2H31119.9°120.3°
O3C3C4H31121.8°120.3°
O3C3C4O462.0°63.2°
O3C3C2C1177.3°176.8°
O3C3C4C5179.8°176.8°
O3C3C4H460.8°56.9°
O3C3C2H2156.8°56.9°
OAVCARCAQOAX52.4°57.0°
OAVCARCAQCAP65.9°62.9°
OAVCARCASOAT53.3°62.3°
OAVCARCAQCAS122.6°119.9°
OAVCARCAQHAR119.2°120.2°
OAVCARCASHAR122.3°120.2°
OAVCARCASCAO70.3°57.7°
OAVCARCAQHAQ175.5°177.2°
OAVCARCASHAS172.5°177.7°
C7N2C2H22180.0°180.0°
C7N2C2C3134.9°155.0°
C7N2C2C1106.7°85.3°
N2C7C8H82179.3°180.0°
N2C7C8H8160.6°60.0°
N2C7C8H8359.4°60.0°
C7N2C2H2114.9°34.9°
C2N2C7O70.2°0.0°
N2C2C3C1119.0°119.9°
N2C2C3H21120.5°120.1°
N2C2C3C4175.0°176.9°
N2C2C1H21121.9°120.1°
N2C2C1O170.6°62.5°
N2C2C1O5172.5°177.5°
N2C2C3H3156.2°57.1°
N2C2C1H150.4°57.6°
O7C7C8H820.0°0.0°
O7C7C8H81120.0°120.0°
O7C7C8H83120.0°120.0°
O7C7N2H22179.8°180.0°
C2C3C4H31118.7°119.8°
C2C3C4O4178.4°176.9°
C3C2C1H21120.3°120.0°
C2C3C4C560.7°57.0°
C3C2C1O1171.6°177.6°
C3C2C1O554.7°57.6°
C2C3C4H458.8°63.0°
C3C2N2H2245.1°25.0°
C3C2C1H167.4°62.3°
C2C3O3H32180.0°60.0°
C3C4O4C5116.2°119.7°
C3C4O4H4122.1°120.1°
C3C4O4CAU131.7°122.6°
C4C3C2C156.0°57.0°
C3C4C5H4119.5°119.9°
C3C4C5O564.8°57.6°
C3C4C5C6177.8°177.6°
C3C4C5H556.5°62.4°
C4C3C2H2164.5°63.0°
C4C3O3H3259.8°179.5°
CBBCBACAZOAX59.3°0.0°
CBBCBACAZHAZ59.1°119.9°
CBBCBACAZH66177.8°120.0°
CBACBBNBCHBC179.4°179.9°
CBACAZOAXHAZ118.4°119.9°
CBACAZOAXH66118.5°120.1°
CBACAZOAXCAQ173.0°180.0°
CBACAZHAZH66124.4°120.1°
CAZCBACBBHBB1.0°0.0°
CAZOAXCAQCAP178.8°90.0°
CAZOAXCAQCAR61.0°150.3°
CAZOAXCAQHAQ61.3°30.1°
OAXCAZHAZH66124.4°120.0°
OAXCAQCAPOAN63.7°63.2°
OAXCAQCAPCAR120.8°120.0°
OAXCAQCAPHAQ120.8°120.2°
OAXCAQCAPCAU175.5°176.9°
OAXCAQCARHAQ123.1°120.2°
OAXCAQCARCAS175.0°176.9°
OAXCAQCAPHAP56.0°56.9°
OAXCAQCARHAR66.8°63.2°
CAQOAXCAZHAZ54.6°60.1°
CAQOAXCAZH6668.5°59.9°
C4O4CAUCAP172.0°174.8°
C4O4CAUOAT68.4°65.3°
O4C4C5H4122.5°120.2°
O4C4C5O5177.2°177.5°
O4C4C5C659.8°62.5°
O4C4C5H561.5°57.6°
O4C4C3H3159.7°57.0°
C4O4CAUHAU53.1°54.7°
O4CAUCAPOAN61.7°62.5°
O4CAUCAPCAQ177.6°177.6°
O4CAUCAPOAT118.1°120.0°
O4CAUCAPHAU119.8°120.0°
O4CAUOATHAU122.0°120.0°
O4CAUOATCAS179.9°178.9°
CAUO4C4C5112.1°117.7°
CAUO4C4H49.6°2.5°
O4CAUCAPHAP58.1°57.7°
OANCAPCAQCAU120.8°119.9°
OANCAPCAQHAP119.7°120.1°
OANCAPCAUHAP119.9°120.2°
OANCAPCAUOAT179.8°177.5°
OANCAPCAQCAR175.5°176.9°
OANCAPCAQHAQ57.1°57.0°
OANCAPCAUHAU58.1°57.5°
CAQCAPCAUHAP119.5°119.9°
CAQCAPCAUOAT59.5°57.6°
CAPCAQCARHAQ118.6°119.8°
CAPCAQCARCAS56.7°57.0°
CAPCAQCARHAR174.8°176.9°
CAQCAPCAUHAU62.5°62.4°
CAQCAPOANHAN180.0°180.0°
CAPCAUOATHAU121.6°120.1°
CAPCAUOATCAS63.7°61.2°
CAUCAPCAQCAR54.8°57.0°
CAUCAPCAQHAQ63.7°62.9°
CAUCAPOANHAN58.2°60.3°
C2C1O1CAF87.9°175.0°
C2C1O1O5120.8°119.9°
C2C1O1H1120.4°120.1°
C2C1O5H1121.5°120.0°
C2C1O5C559.7°61.1°
C1C2N2H2273.4°94.7°
C1C2C3H3162.9°62.8°
CAUOATCASCAR67.2°61.1°
CAUOATCASCAO170.8°178.9°
OATCAUCAPHAP60.0°62.3°
CAUOATCASHAS51.1°58.8°
OATCASCARCAQ66.0°57.6°
OATCASCARCAO123.6°120.0°
OATCASCARHAS119.1°120.0°
OATCASCAOHAS120.5°120.0°
OATCASCAOOAW45.5°65.1°
OATCASCAOHAO165.6°174.9°
OATCASCAOH6474.6°55.0°
OATCASCARHAR175.6°177.5°
CASOATCAUHAU57.9°58.9°
CAQCARCASHAR118.4°119.9°
CAQCARCASCAO170.4°177.6°
CARCAQCAPHAP64.7°63.0°
CAQCARCASHAS53.1°62.4°
CAQCAROAVHAV180.0°180.0°
CARCASCAOHAS117.2°120.0°
CARCASCAOOAW167.8°175.0°
CARCASCAOHAO72.1°55.0°
CARCASCAOH6447.8°64.9°
CASCARCAQHAQ61.9°62.9°
CASCAROAVHAV60.7°60.3°
C4C5O5C164.5°61.1°
C4C5O5C6120.6°120.0°
C4C5O5H5120.5°120.0°
C4C5C6H5121.3°120.0°
C4C5C6O662.9°174.9°
C4C5C6H62177.3°54.9°
C4C5C6H6156.9°65.1°
C5C4C3H3158.0°62.9°
O1CAFCAMHAF119.2°120.0°
O1CAFCAMH63119.2°120.1°
CAFO1C1O5151.3°65.0°
O1CAFCAMCAY153.2°180.0°
CAFO1C1H132.5°55.0°
O1CAFHAFH63122.2°120.0°
O1CAFCAMHAM85.2°60.0°
O1CAFCAMH231.5°60.0°
CAMCAFO1C1139.7°180.0°
CAFCAMCAYHAM121.7°120.1°
CAFCAMCAYH2121.7°120.0°
CAMCAFHAFH63122.3°120.0°
CAFCAMHAMH2114.6°120.0°
CAFCAMCAYH3180.0°60.0°
CAFCAMCAYHAY60.0°180.0°
CAFCAMCAYH6560.0°59.9°
O1C1O5H1118.8°120.0°
O1C1O5C5179.4°178.9°
O1C1C2H2151.3°57.6°
C1O1CAFHAF101.1°60.0°
C1O1CAFH6320.5°60.0°
C1O5C5C6174.9°178.8°
C1O5C5H556.0°58.8°
O5C1C2H2165.6°62.4°
O5C5C6H5119.7°120.0°
O5C5C6O656.1°65.1°
O5C5C4H454.7°62.3°
O5C5C6H6263.7°174.9°
O5C5C6H61175.9°54.9°
C5O5C1H161.8°58.8°
C5C6O6H62119.8°120.0°
C5C6O6H61119.8°120.0°
C6C5C4H462.7°57.7°
C5C6H62H61120.5°120.0°
C5C6O6H67180.0°180.0°
CASCAOOAWHAO120.1°120.0°
CASCAOOAWH64120.1°120.1°
CASCAOHAOH64119.8°120.0°
CAOCASCARHAR52.0°62.5°
CASCAOOAWHAW180.0°180.0°
OAWCAOHAOH64119.8°120.0°
OAWCAOCASHAS75.0°54.9°
CAYCAMCAFHAF33.9°60.0°
CAYCAMCAFH6387.6°59.9°
CAYCAMHAMH2114.6°120.0°
CAMCAYH3HAY120.0°120.0°
CAMCAYH3H65120.0°120.0°
CAMCAYHAYH65120.0°120.1°
O6C6C5H5175.8°54.8°
O6C6H62H61120.6°120.0°
H4C4C5H5176.0°177.7°
H4C4C3H31177.4°177.2°
H5C5C6H6256.0°65.2°
H5C5C6H6164.4°174.8°
H62C6O6H6760.2°60.0°
H61C6O6H6760.2°60.0°
H82C8H81H83120.0°120.0°
H22N2C2H21165.1°145.2°
H31C3C2H21176.7°177.2°
H31C3O3H3261.2°60.3°
H1C1C2H21172.3°177.7°
HAFCAFCAMHAM155.6°60.0°
HAFCAFCAMH287.7°180.0°
H63CAFCAMHAM34.1°180.0°
H63CAFCAMH2150.7°60.0°
HAMCAMCAYH358.3°60.0°
HAMCAMCAYHAY178.3°59.9°
HAMCAMCAYH6561.7°180.0°
H2CAMCAYH358.3°NaN°
H2CAMCAYHAY61.6°60.0°
H2CAMCAYH65178.3°60.0°
HAOCAOCASHAS45.1°65.0°
HAOCAOOAWHAW59.9°60.0°
H64CAOCASHAS164.9°175.0°
H64CAOOAWHAW59.9°59.9°
HAPCAPCAQHAQ176.8°177.1°
HAPCAPCAUHAU177.9°177.7°
HAPCAPOANHAN61.0°60.0°
HAQCAQCARHAR56.3°57.0°
HARCARCASHAS65.2°57.5°
HARCAROAVHAV61.2°59.8°
H3CAYHAYH65120.0°120.0°
HBBCBBNBCHBC0.6°0.2°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon