Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1' | O1' | sing | 1.43Å | 1.22Å | |
| C1' | C2' | sing | 1.53Å | 1.50Å | |
| C1' | H1'1 | sing | 1.09Å | 1.12Å | |
| C1' | H1'2 | sing | 1.09Å | 1.12Å | |
| O1' | HO'1 | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.45Å | |
| C2' | C3' | sing | 1.53Å | 1.57Å | |
| C2' | H2' | sing | 1.09Å | 1.11Å | |
| O2' | HO'2 | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.47Å | |
| C3' | C4' | sing | 1.53Å | 1.57Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HO'3 | sing | 0.97Å | 0.95Å | |
| C4' | O4' | sing | 1.43Å | 1.40Å | |
| C4' | C5' | sing | 1.53Å | 1.56Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | HO'4 | sing | 0.97Å | 0.95Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C5' | H5'1 | sing | 1.09Å | 1.12Å | |
| C5' | H5'2 | sing | 1.09Å | 1.12Å | |
| O5' | P | sing | 1.61Å | 1.62Å | |
| P | O1P | doub | 1.48Å | 1.59Å | |
| P | O2P | sing | 1.61Å | 1.59Å | |
| P | O3P | sing | 1.61Å | 1.47Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1' | C1' | C2' | 119.1° | 109.4° |
| O1' | C1' | H1'1 | 108.8° | 109.5° |
| O1' | C1' | H1'2 | 108.8° | 109.4° |
| C1' | O1' | HO'1 | 119.0° | 106.8° |
| C2' | C1' | H1'1 | 108.8° | 109.5° |
| C2' | C1' | H1'2 | 108.8° | 109.5° |
| C1' | C2' | O2' | 108.9° | 109.5° |
| C1' | C2' | C3' | 111.6° | 109.5° |
| C1' | C2' | H2' | 108.4° | 109.5° |
| H1'1 | C1' | H1'2 | 101.2° | 109.5° |
| O2' | C2' | C3' | 109.5° | 109.5° |
| O2' | C2' | H2' | 110.7° | 109.5° |
| C2' | O2' | HO'2 | 108.9° | 106.8° |
| C3' | C2' | H2' | 107.8° | 109.5° |
| C2' | C3' | O3' | 104.8° | 109.5° |
| C2' | C3' | C4' | 110.9° | 109.5° |
| C2' | C3' | H3' | 112.1° | 109.5° |
| O3' | C3' | C4' | 110.7° | 109.5° |
| O3' | C3' | H3' | 112.2° | 109.5° |
| C3' | O3' | HO'3 | 104.8° | 106.8° |
| C4' | C3' | H3' | 106.3° | 109.5° |
| C3' | C4' | O4' | 110.2° | 109.4° |
| C3' | C4' | C5' | 113.5° | 109.5° |
| C3' | C4' | H4' | 106.4° | 109.5° |
| O4' | C4' | C5' | 110.1° | 109.5° |
| O4' | C4' | H4' | 110.0° | 109.5° |
| C4' | O4' | HO'4 | 110.1° | 106.9° |
| C5' | C4' | H4' | 106.4° | 109.5° |
| C4' | C5' | O5' | 112.1° | 109.5° |
| C4' | C5' | H5'1 | 111.3° | 109.5° |
| C4' | C5' | H5'2 | 111.3° | 109.5° |
| O5' | C5' | H5'1 | 111.2° | 109.4° |
| O5' | C5' | H5'2 | 111.2° | 109.5° |
| C5' | O5' | P | 125.7° | 106.8° |
| H5'1 | C5' | H5'2 | 99.1° | 109.4° |
| O5' | P | O1P | 110.0° | 109.5° |
| O5' | P | O2P | 106.3° | 109.5° |
| O5' | P | O3P | 112.8° | 109.5° |
| O1P | P | O2P | 111.8° | 109.5° |
| O1P | P | O3P | 106.6° | 109.5° |
| O2P | P | O3P | 109.4° | 109.5° |
| P | O2P | HOP2 | 106.2° | 106.8° |
| P | O3P | HOP3 | 112.8° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1' | C1' | C2' | H1'1 | 125.3° | 120.0° |
| O1' | C1' | C2' | H1'2 | 125.3° | 120.0° |
| O1' | C1' | H1'1 | H1'2 | 114.4° | 120.0° |
| O1' | C1' | C2' | O2' | 59.6° | 65.0° |
| O1' | C1' | C2' | C3' | 179.5° | 175.0° |
| O1' | C1' | C2' | H2' | 60.9° | 55.0° |
| C2' | C1' | H1'1 | H1'2 | 114.4° | 120.0° |
| C2' | C1' | O1' | HO'1 | 180.0° | 180.0° |
| C1' | C2' | O2' | C3' | 122.3° | 120.0° |
| C1' | C2' | O2' | H2' | 119.0° | 120.0° |
| C1' | C2' | C3' | H2' | 118.9° | 120.0° |
| C1' | C2' | O2' | HO'2 | 180.0° | 59.9° |
| C1' | C2' | C3' | O3' | 59.5° | 60.0° |
| C1' | C2' | C3' | C4' | 179.0° | 180.0° |
| C1' | C2' | C3' | H3' | 62.4° | 60.0° |
| H1'1 | C1' | O1' | HO'1 | 54.7° | 60.0° |
| H1'1 | C1' | C2' | O2' | 175.1° | 175.0° |
| H1'1 | C1' | C2' | C3' | 54.1° | 55.0° |
| H1'1 | C1' | C2' | H2' | 64.5° | 65.0° |
| H1'2 | C1' | O1' | HO'1 | 54.7° | 60.0° |
| H1'2 | C1' | C2' | O2' | 65.7° | 55.0° |
| H1'2 | C1' | C2' | C3' | 55.2° | 65.0° |
| H1'2 | C1' | C2' | H2' | 173.8° | 175.0° |
| O2' | C2' | C3' | H2' | 120.4° | 120.0° |
| O2' | C2' | C3' | O3' | 179.9° | 180.0° |
| O2' | C2' | C3' | C4' | 60.4° | 60.0° |
| O2' | C2' | C3' | H3' | 58.2° | 60.0° |
| C3' | C2' | O2' | HO'2 | 57.7° | 60.1° |
| C2' | C3' | O3' | C4' | 119.6° | 120.0° |
| C2' | C3' | O3' | H3' | 121.8° | 120.0° |
| C2' | C3' | C4' | H3' | 122.0° | 120.0° |
| C2' | C3' | O3' | HO'3 | 180.0° | 60.0° |
| C2' | C3' | C4' | O4' | 64.7° | 60.0° |
| C2' | C3' | C4' | C5' | 171.3° | 180.0° |
| C2' | C3' | C4' | H4' | 54.6° | 60.0° |
| H2' | C2' | O2' | HO'2 | 61.0° | 179.9° |
| H2' | C2' | C3' | O3' | 59.4° | 60.0° |
| H2' | C2' | C3' | C4' | 60.0° | 60.0° |
| H2' | C2' | C3' | H3' | 178.6° | 180.0° |
| O3' | C3' | C4' | H3' | 122.1° | 120.0° |
| O3' | C3' | C4' | O4' | 179.5° | 180.0° |
| O3' | C3' | C4' | C5' | 55.4° | 60.0° |
| O3' | C3' | C4' | H4' | 61.3° | 60.0° |
| C4' | C3' | O3' | HO'3 | 60.4° | 60.0° |
| C3' | C4' | O4' | C5' | 126.0° | 119.9° |
| C3' | C4' | O4' | H4' | 117.0° | 120.0° |
| C3' | C4' | C5' | H4' | 116.7° | 120.0° |
| C3' | C4' | O4' | HO'4 | 180.0° | 60.0° |
| C3' | C4' | C5' | O5' | 164.3° | 175.0° |
| C3' | C4' | C5' | H5'1 | 39.0° | 55.0° |
| C3' | C4' | C5' | H5'2 | 70.4° | 65.0° |
| H3' | C3' | O3' | HO'3 | 58.1° | 180.0° |
| H3' | C3' | C4' | O4' | 57.3° | 60.0° |
| H3' | C3' | C4' | C5' | 66.7° | 60.0° |
| H3' | C3' | C4' | H4' | 176.6° | 180.0° |
| O4' | C4' | C5' | H4' | 119.2° | 120.0° |
| O4' | C4' | C5' | O5' | 71.7° | 65.1° |
| O4' | C4' | C5' | H5'1 | 163.1° | 175.0° |
| O4' | C4' | C5' | H5'2 | 53.6° | 55.0° |
| C5' | C4' | O4' | HO'4 | 54.0° | 60.0° |
| C4' | C5' | O5' | H5'1 | 125.3° | 120.0° |
| C4' | C5' | O5' | H5'2 | 125.3° | 120.1° |
| C4' | C5' | H5'1 | H5'2 | 117.2° | 120.1° |
| C4' | C5' | O5' | P | 144.1° | 180.0° |
| H4' | C4' | O4' | HO'4 | 63.0° | 180.0° |
| H4' | C4' | C5' | O5' | 47.6° | 55.0° |
| H4' | C4' | C5' | H5'1 | 77.7° | 65.0° |
| H4' | C4' | C5' | H5'2 | 172.9° | 175.0° |
| O5' | C5' | H5'1 | H5'2 | 117.1° | 120.0° |
| C5' | O5' | P | O1P | 40.4° | 55.0° |
| C5' | O5' | P | O2P | 161.6° | 65.0° |
| C5' | O5' | P | O3P | 78.5° | 175.0° |
| H5'1 | C5' | O5' | P | 18.8° | 60.0° |
| H5'2 | C5' | O5' | P | 90.6° | 59.9° |
| O5' | P | O1P | O2P | 117.8° | 120.0° |
| O5' | P | O1P | O3P | 122.6° | 120.0° |
| O5' | P | O2P | O3P | 122.1° | 120.0° |
| O5' | P | O2P | HOP2 | 179.9° | 60.0° |
| O5' | P | O3P | HOP3 | 179.9° | 180.0° |
| O1P | P | O2P | O3P | 117.9° | 120.0° |
| O1P | P | O2P | HOP2 | 59.9° | 180.0° |
| O1P | P | O3P | HOP3 | 59.1° | 60.0° |
| O2P | P | O3P | HOP3 | 62.0° | 60.0° |
| O3P | P | O2P | HOP2 | 58.0° | 60.0° |
