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OPP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
NC1sing1.34Å1.38Å
NC4sing1.34Å1.39Å
NC5sing1.46Å1.46Å
C1O1doub1.21Å1.24Å
C1C2sing1.48Å1.50Å
C2C3doub1.34Å1.58Å
C2H2sing1.08Å1.10Å
C3C4sing1.48Å1.51Å
C3H3sing1.08Å1.10Å
C4O4doub1.21Å1.24Å
C5Osing1.43Å1.43Å
C5H51sing1.09Å1.11Å
C5H52sing1.09Å1.12Å
OC5'sing1.43Å1.44Å
C5'N'sing1.46Å1.49Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.12Å
N'C1'sing1.35Å1.41Å
N'C4'sing1.34Å1.41Å
C1'O1'doub1.21Å1.25Å
C1'C2'sing1.48Å1.52Å
C2'C3'doub1.34Å1.60Å
C2'H2'sing1.08Å1.10Å
C3'C4'sing1.48Å1.51Å
C3'H3'sing1.08Å1.10Å
C4'O4'doub1.21Å1.25Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1NC4109.6°109.6°
C1NC5123.6°125.2°
NC1O1124.4°125.8°
NC1C2112.4°108.5°
C4NC5126.8°125.2°
NC4C3112.0°108.4°
NC4O4125.6°125.8°
NC5O111.0°109.5°
NC5H51111.6°109.5°
NC5H52111.6°109.5°
O1C1C2123.1°125.8°
C1C2C3103.0°106.8°
C1C2H2126.7°126.6°
C3C2H2130.3°126.6°
C2C3C4103.0°106.8°
C2C3H3130.2°126.6°
C4C3H3126.8°126.6°
C3C4O4122.4°125.8°
OC5H51111.7°109.4°
OC5H52111.7°109.5°
C5OC5'111.0°106.8°
H51C5H5298.7°109.4°
OC5'N'110.2°109.5°
OC5'H5'1112.0°109.5°
OC5'H5'2112.0°109.5°
N'C5'H5'1111.9°109.5°
N'C5'H5'2111.9°109.5°
C5'N'C1'125.5°125.2°
C5'N'C4'125.4°125.3°
H5'1C5'H5'298.5°109.4°
C1'N'C4'109.1°109.5°
N'C1'O1'124.6°125.8°
N'C1'C2'111.8°108.5°
N'C4'C3'112.2°108.4°
N'C4'O4'125.1°125.8°
O1'C1'C2'123.6°125.8°
C1'C2'C3'103.4°106.7°
C1'C2'H2'126.4°126.7°
C3'C2'H2'130.1°126.6°
C2'C3'C4'103.5°106.8°
C2'C3'H3'130.3°126.6°
C4'C3'H3'126.2°126.6°
C3'C4'O4'122.8°125.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1NC4C5179.8°179.6°
NC1O1C2180.0°179.6°
NC1C2C30.3°0.3°
NC1C2H2179.7°179.8°
C1NC4C30.1°0.4°
C1NC4O4179.9°179.9°
C1NC5O76.0°90.5°
C1NC5H5149.3°29.6°
C1NC5H52158.8°149.5°
C4NC1O1179.9°179.9°
C4NC1C20.1°0.4°
NC4C3C20.3°0.2°
NC4C3O4179.8°179.7°
NC4C3H3179.7°179.8°
C4NC5O103.8°90.0°
C4NC5H51130.9°150.0°
C4NC5H5221.4°30.0°
C5NC1O10.1°0.3°
C5NC1C2179.9°180.0°
C5NC4C3179.7°180.0°
C5NC4O40.0°0.3°
NC5OH51125.2°120.1°
NC5OH52125.2°120.0°
NC5H51H52117.5°120.0°
NC5OC5'179.3°90.0°
O1C1C2C3179.8°180.0°
O1C1C2H20.2°0.1°
C1C2C3H2180.0°180.0°
C1C2C3C40.3°0.0°
C1C2C3H3179.7°180.0°
C2C3C4H3180.0°180.0°
C2C3C4O4180.0°180.0°
H2C2C3C4179.7°180.0°
H2C2C3H30.3°0.0°
H3C3C4O40.0°0.0°
OC5H51H52117.6°119.9°
C5OC5'N'179.8°90.0°
C5OC5'H5'154.6°150.0°
C5OC5'H5'255.0°30.1°
H51C5OC5'54.1°30.0°
H52C5OC5'55.4°149.9°
OC5'N'H5'1125.3°120.0°
OC5'N'H5'2125.2°120.0°
OC5'H5'1H5'2117.9°119.9°
OC5'N'C1'152.4°89.9°
OC5'N'C4'27.5°90.3°
N'C5'H5'1H5'2117.8°120.0°
C5'N'C1'C4'179.9°179.8°
C5'N'C1'O1'0.2°0.1°
C5'N'C1'C2'179.8°180.0°
C5'N'C4'C3'179.6°179.8°
C5'N'C4'O4'0.2°0.2°
H5'1C5'N'C1'82.3°30.1°
H5'1C5'N'C4'97.8°149.7°
H5'2C5'N'C1'27.2°150.0°
H5'2C5'N'C4'152.7°29.7°
N'C1'O1'C2'180.0°179.9°
N'C1'C2'C3'0.1°0.1°
N'C1'C2'H2'179.9°180.0°
C1'N'C4'C3'0.3°0.4°
C1'N'C4'O4'179.9°180.0°
C4'N'C1'O1'179.9°179.7°
C4'N'C1'C2'0.1°0.2°
N'C4'C3'C2'0.4°0.4°
N'C4'C3'O4'179.8°179.6°
N'C4'C3'H3'179.5°179.8°
O1'C1'C2'C3'179.8°180.0°
O1'C1'C2'H2'0.1°0.1°
C1'C2'C3'H2'180.0°179.9°
C1'C2'C3'C4'0.3°0.3°
C1'C2'C3'H3'179.6°179.9°
C2'C3'C4'H3'180.0°179.8°
C2'C3'C4'O4'179.8°180.0°
H2'C2'C3'C4'179.7°179.8°
H2'C2'C3'H3'0.3°0.0°
H3'C3'C4'O4'0.2°0.2°

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PDB entries from 2024-10-09

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