OPN
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1' | C2' | sing | 1.47Å | 1.46Å | |
| N1' | H1'1 | sing | 1.01Å | 1.02Å | |
| N1' | H1'2 | sing | 1.01Å | 1.02Å | |
| N1' | H1'3 | sing | 1.01Å | 1.02Å | |
| C2' | C3' | sing | 1.53Å | 1.52Å | |
| C2' | H2'1 | sing | 1.09Å | 1.11Å | |
| C2' | H2'2 | sing | 1.09Å | 1.11Å | |
| C3' | N4' | sing | 1.47Å | 1.47Å | |
| C3' | H3'1 | sing | 1.09Å | 1.12Å | |
| C3' | H3'2 | sing | 1.09Å | 1.11Å | |
| N4' | C5' | sing | 1.47Å | 1.45Å | |
| N4' | C7' | sing | 1.35Å | 1.33Å | |
| C5' | C' | sing | 1.51Å | 1.52Å | |
| C5' | H5'1 | sing | 1.09Å | 1.11Å | |
| C5' | H5'2 | sing | 1.09Å | 1.11Å | |
| C' | O1' | doub | 1.21Å | 1.22Å | |
| C' | OXT | sing | 1.34Å | 1.34Å | |
| C7' | O7' | doub | 1.21Å | 1.23Å | |
| C7' | C8' | sing | 1.51Å | 1.52Å | |
| C8' | C1 | sing | 1.51Å | 1.52Å | |
| C8' | H8'1 | sing | 1.09Å | 1.12Å | |
| C8' | H8'2 | sing | 1.09Å | 1.11Å | |
| C1 | C6 | doub | 1.36Å | 1.34Å | Aromatic |
| C1 | C2 | sing | 1.41Å | 1.46Å | Aromatic |
| C6 | C5 | sing | 1.46Å | 1.48Å | Aromatic |
| C6 | H6 | sing | 1.08Å | 1.10Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C2 | N3 | sing | 1.34Å | 1.37Å | Aromatic |
| N3 | C4 | sing | 1.38Å | 1.35Å | Aromatic |
| N3 | HN3 | sing | 0.97Å | 1.02Å | |
| C4 | C5 | doub | 1.41Å | 1.40Å | Aromatic |
| C4 | N10 | sing | 1.33Å | 1.35Å | Aromatic |
| C5 | C7 | sing | 1.40Å | 1.38Å | Aromatic |
| C7 | C8 | doub | 1.38Å | 1.38Å | Aromatic |
| C7 | H7 | sing | 1.08Å | 1.10Å | |
| C8 | C9 | sing | 1.39Å | 1.42Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| C9 | N10 | doub | 1.32Å | 1.37Å | Aromatic |
| C9 | H9 | sing | 1.08Å | 1.10Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2' | N1' | H1'1 | 115.7° | 109.5° |
| C2' | N1' | H1'2 | 110.0° | 109.5° |
| C2' | N1' | H1'3 | 110.0° | 109.5° |
| N1' | C2' | C3' | 115.7° | 109.5° |
| N1' | C2' | H2'1 | 109.9° | 109.4° |
| N1' | C2' | H2'2 | 109.9° | 109.5° |
| H1'1 | N1' | H1'2 | 109.9° | 109.4° |
| H1'1 | N1' | H1'3 | 109.9° | 109.4° |
| H1'2 | N1' | H1'3 | 100.3° | 109.5° |
| C3' | C2' | H2'1 | 109.9° | 109.5° |
| C3' | C2' | H2'2 | 110.0° | 109.5° |
| C2' | C3' | N4' | 108.6° | 109.4° |
| C2' | C3' | H3'1 | 112.5° | 109.5° |
| C2' | C3' | H3'2 | 112.5° | 109.5° |
| H2'1 | C2' | H2'2 | 100.3° | 109.5° |
| N4' | C3' | H3'1 | 112.5° | 109.5° |
| N4' | C3' | H3'2 | 112.6° | 109.4° |
| C3' | N4' | C5' | 115.6° | 120.0° |
| C3' | N4' | C7' | 125.0° | 120.0° |
| H3'1 | C3' | H3'2 | 97.9° | 109.4° |
| C5' | N4' | C7' | 119.4° | 120.0° |
| N4' | C5' | C' | 113.6° | 109.5° |
| N4' | C5' | H5'1 | 110.7° | 109.4° |
| N4' | C5' | H5'2 | 110.7° | 109.5° |
| N4' | C7' | O7' | 118.5° | 120.0° |
| N4' | C7' | C8' | 120.7° | 120.0° |
| C' | C5' | H5'1 | 110.8° | 109.5° |
| C' | C5' | H5'2 | 110.8° | 109.5° |
| C5' | C' | O1' | 116.0° | 120.0° |
| C5' | C' | OXT | 124.7° | 119.9° |
| H5'1 | C5' | H5'2 | 99.6° | 109.5° |
| O1' | C' | OXT | 119.3° | 120.1° |
| C' | OXT | HXT | 124.7° | 120.0° |
| O7' | C7' | C8' | 120.9° | 120.0° |
| C7' | C8' | C1 | 117.7° | 109.5° |
| C7' | C8' | H8'1 | 109.3° | 109.5° |
| C7' | C8' | H8'2 | 109.3° | 109.5° |
| C1 | C8' | H8'1 | 109.2° | 109.5° |
| C1 | C8' | H8'2 | 109.2° | 109.5° |
| C8' | C1 | C6 | 118.8° | 120.0° |
| C8' | C1 | C2 | 119.6° | 120.0° |
| H8'1 | C8' | H8'2 | 100.8° | 109.5° |
| C6 | C1 | C2 | 121.6° | 120.1° |
| C1 | C6 | C5 | 117.4° | 118.5° |
| C1 | C6 | H6 | 116.8° | 120.8° |
| C1 | C2 | O2 | 126.2° | 119.1° |
| C1 | C2 | N3 | 117.9° | 121.7° |
| C5 | C6 | H6 | 125.8° | 120.8° |
| C6 | C5 | C4 | 120.9° | 119.3° |
| C6 | C5 | C7 | 121.7° | 121.3° |
| O2 | C2 | N3 | 115.8° | 119.2° |
| C2 | N3 | C4 | 123.8° | 121.1° |
| C2 | N3 | HN3 | 119.0° | 119.4° |
| C4 | N3 | HN3 | 117.2° | 119.5° |
| N3 | C4 | C5 | 118.4° | 119.4° |
| N3 | C4 | N10 | 121.8° | 120.7° |
| C5 | C4 | N10 | 119.8° | 119.9° |
| C4 | C5 | C7 | 117.4° | 119.4° |
| C4 | N10 | C9 | 122.3° | 121.6° |
| C5 | C7 | C8 | 124.2° | 117.9° |
| C5 | C7 | H7 | 117.8° | 121.0° |
| C8 | C7 | H7 | 117.9° | 121.0° |
| C7 | C8 | C9 | 115.7° | 119.5° |
| C7 | C8 | H8 | 121.1° | 120.2° |
| C9 | C8 | H8 | 123.2° | 120.3° |
| C8 | C9 | N10 | 120.5° | 121.6° |
| C8 | C9 | H9 | 121.5° | 119.2° |
| N10 | C9 | H9 | 118.0° | 119.2° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2' | N1' | H1'1 | H1'2 | 125.3° | 120.0° |
| C2' | N1' | H1'1 | H1'3 | 125.3° | 120.0° |
| C2' | N1' | H1'2 | H1'3 | 115.8° | 120.1° |
| N1' | C2' | C3' | H2'1 | 125.2° | 120.0° |
| N1' | C2' | C3' | H2'2 | 125.3° | 120.0° |
| N1' | C2' | H2'1 | H2'2 | 115.8° | 120.0° |
| N1' | C2' | C3' | N4' | 69.2° | 176.2° |
| N1' | C2' | C3' | H3'1 | 56.0° | 63.8° |
| N1' | C2' | C3' | H3'2 | 165.5° | 56.3° |
| H1'1 | N1' | H1'2 | H1'3 | 115.7° | 119.9° |
| H1'1 | N1' | C2' | C3' | 180.0° | 60.0° |
| H1'1 | N1' | C2' | H2'1 | 54.8° | 180.0° |
| H1'1 | N1' | C2' | H2'2 | 54.7° | 60.0° |
| H1'2 | N1' | C2' | C3' | 54.8° | 60.0° |
| H1'2 | N1' | C2' | H2'1 | 70.5° | 60.0° |
| H1'2 | N1' | C2' | H2'2 | 180.0° | 180.0° |
| H1'3 | N1' | C2' | C3' | 54.7° | 180.0° |
| H1'3 | N1' | C2' | H2'1 | 179.9° | 60.0° |
| H1'3 | N1' | C2' | H2'2 | 70.6° | 60.0° |
| C3' | C2' | H2'1 | H2'2 | 115.8° | 120.0° |
| C2' | C3' | N4' | H3'1 | 125.2° | 120.1° |
| C2' | C3' | N4' | H3'2 | 125.3° | 120.0° |
| C2' | C3' | H3'1 | H3'2 | 118.5° | 120.0° |
| C2' | C3' | N4' | C5' | 68.9° | 87.2° |
| C2' | C3' | N4' | C7' | 110.5° | 92.9° |
| H2'1 | C2' | C3' | N4' | 165.6° | 56.2° |
| H2'1 | C2' | C3' | H3'1 | 69.2° | 176.3° |
| H2'1 | C2' | C3' | H3'2 | 40.3° | 63.7° |
| H2'2 | C2' | C3' | N4' | 56.0° | 63.8° |
| H2'2 | C2' | C3' | H3'1 | 178.7° | 56.2° |
| H2'2 | C2' | C3' | H3'2 | 69.2° | 176.3° |
| N4' | C3' | H3'1 | H3'2 | 118.5° | 119.9° |
| C3' | N4' | C5' | C7' | 179.4° | 180.0° |
| C3' | N4' | C5' | C' | 90.5° | 90.0° |
| C3' | N4' | C5' | H5'1 | 34.7° | 150.0° |
| C3' | N4' | C5' | H5'2 | 144.2° | 30.0° |
| C3' | N4' | C7' | O7' | 174.1° | 176.8° |
| C3' | N4' | C7' | C8' | 5.1° | 3.3° |
| H3'1 | C3' | N4' | C5' | 165.9° | 32.9° |
| H3'1 | C3' | N4' | C7' | 14.8° | 147.1° |
| H3'2 | C3' | N4' | C5' | 56.4° | 152.9° |
| H3'2 | C3' | N4' | C7' | 124.3° | 27.1° |
| N4' | C5' | C' | H5'1 | 125.2° | 119.9° |
| N4' | C5' | C' | H5'2 | 125.3° | 120.0° |
| N4' | C5' | H5'1 | H5'2 | 116.5° | 119.9° |
| N4' | C5' | C' | O1' | 179.0° | 0.0° |
| N4' | C5' | C' | OXT | 1.3° | 180.0° |
| C5' | N4' | C7' | O7' | 6.6° | 3.2° |
| C5' | N4' | C7' | C8' | 174.2° | 176.8° |
| C7' | N4' | C5' | C' | 90.1° | 90.0° |
| C7' | N4' | C5' | H5'1 | 144.6° | 30.0° |
| C7' | N4' | C5' | H5'2 | 35.2° | 150.0° |
| N4' | C7' | O7' | C8' | 179.2° | 180.0° |
| N4' | C7' | C8' | C1 | 168.1° | 175.0° |
| N4' | C7' | C8' | H8'1 | 66.7° | 65.0° |
| N4' | C7' | C8' | H8'2 | 42.8° | 55.0° |
| C' | C5' | H5'1 | H5'2 | 116.6° | 120.1° |
| C5' | C' | O1' | OXT | 179.7° | 179.9° |
| C5' | C' | OXT | HXT | 180.0° | 180.0° |
| H5'1 | C5' | C' | O1' | 53.7° | 120.0° |
| H5'1 | C5' | C' | OXT | 126.6° | 60.1° |
| H5'2 | C5' | C' | O1' | 55.8° | 120.0° |
| H5'2 | C5' | C' | OXT | 123.9° | 60.0° |
| O1' | C' | OXT | HXT | 0.3° | 0.1° |
| O7' | C7' | C8' | C1 | 11.1° | 5.0° |
| O7' | C7' | C8' | H8'1 | 114.2° | 115.0° |
| O7' | C7' | C8' | H8'2 | 136.4° | 125.0° |
| C7' | C8' | C1 | H8'1 | 125.3° | 120.0° |
| C7' | C8' | C1 | H8'2 | 125.3° | 120.0° |
| C7' | C8' | H8'1 | H8'2 | 115.0° | 120.0° |
| C7' | C8' | C1 | C6 | 99.0° | 95.0° |
| C7' | C8' | C1 | C2 | 82.0° | 85.3° |
| C1 | C8' | H8'1 | H8'2 | 115.0° | 120.0° |
| C8' | C1 | C6 | C2 | 179.0° | 179.7° |
| C8' | C1 | C6 | C5 | 179.1° | 180.0° |
| C8' | C1 | C6 | H6 | 0.8° | 0.0° |
| C8' | C1 | C2 | O2 | 1.0° | 0.3° |
| C8' | C1 | C2 | N3 | 178.3° | 179.7° |
| H8'1 | C8' | C1 | C6 | 26.2° | 25.0° |
| H8'1 | C8' | C1 | C2 | 152.8° | 154.7° |
| H8'2 | C8' | C1 | C6 | 135.6° | 145.0° |
| H8'2 | C8' | C1 | C2 | 43.4° | 34.7° |
| C1 | C6 | C5 | H6 | 179.9° | 179.9° |
| C6 | C1 | C2 | O2 | 180.0° | 180.0° |
| C6 | C1 | C2 | N3 | 0.7° | 0.6° |
| C1 | C6 | C5 | C4 | 0.6° | 0.1° |
| C1 | C6 | C5 | C7 | 180.0° | 180.0° |
| C2 | C1 | C6 | C5 | 0.2° | 0.3° |
| C2 | C1 | C6 | H6 | 179.8° | 179.7° |
| C1 | C2 | O2 | N3 | 179.3° | 179.4° |
| C1 | C2 | N3 | C4 | 1.2° | 0.7° |
| C1 | C2 | N3 | HN3 | 178.8° | 179.6° |
| C6 | C5 | C4 | N3 | 0.1° | 0.1° |
| C6 | C5 | C4 | C7 | 179.4° | 179.9° |
| C6 | C5 | C4 | N10 | 179.4° | 180.0° |
| C6 | C5 | C7 | C8 | 179.8° | 180.0° |
| C6 | C5 | C7 | H7 | 0.2° | 0.1° |
| H6 | C6 | C5 | C4 | 179.4° | 180.0° |
| H6 | C6 | C5 | C7 | 0.1° | 0.1° |
| O2 | C2 | N3 | C4 | 179.4° | 180.0° |
| O2 | C2 | N3 | HN3 | 0.6° | 0.3° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.7° |
| C2 | N3 | C4 | C5 | 0.8° | 0.4° |
| C2 | N3 | C4 | N10 | 179.7° | 179.7° |
| N3 | C4 | C5 | N10 | 179.5° | 179.9° |
| N3 | C4 | C5 | C7 | 179.6° | 180.0° |
| N3 | C4 | N10 | C9 | 179.7° | 180.0° |
| HN3 | N3 | C4 | C5 | 179.2° | 179.9° |
| HN3 | N3 | C4 | N10 | 0.3° | 0.1° |
| C4 | C5 | C7 | C8 | 0.4° | 0.1° |
| C4 | C5 | C7 | H7 | 179.6° | 180.0° |
| C5 | C4 | N10 | C9 | 0.2° | 0.1° |
| N10 | C4 | C5 | C7 | 0.1° | 0.1° |
| C4 | N10 | C9 | C8 | 0.1° | 0.1° |
| C4 | N10 | C9 | H9 | 179.9° | 180.0° |
| C5 | C7 | C8 | H7 | 180.0° | 179.9° |
| C5 | C7 | C8 | C9 | 0.6° | 0.0° |
| C5 | C7 | C8 | H8 | 179.4° | 179.9° |
| C7 | C8 | C9 | H8 | 180.0° | 179.9° |
| C7 | C8 | C9 | N10 | 0.5° | 0.0° |
| C7 | C8 | C9 | H9 | 179.5° | 180.0° |
| H7 | C7 | C8 | C9 | 179.3° | 180.0° |
| H7 | C7 | C8 | H8 | 0.6° | 0.0° |
| C8 | C9 | N10 | H9 | 180.0° | 180.0° |
| H8 | C8 | C9 | N10 | 179.5° | 179.9° |
| H8 | C8 | C9 | H9 | 0.5° | 0.0° |
