OPM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C3'	C4'	sing	1.53Å	1.55Å
C3'	C2'	sing	1.53Å	1.54Å
C3'	H3'1	sing	1.09Å	1.12Å
C3'	H3'2	sing	1.09Å	1.12Å
C4'	C5'	sing	1.53Å	1.54Å
C4'	H4'1	sing	1.09Å	1.11Å
C4'	H4'2	sing	1.09Å	1.12Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.12Å
C5'	H5'3	sing	1.09Å	1.12Å
C1'	C2'	sing	1.53Å	1.55Å
C1'	O1	sing	1.43Å	1.42Å
C1'	H1'1	sing	1.09Å	1.12Å
C1'	H1'2	sing	1.09Å	1.11Å
C2'	H2'1	sing	1.09Å	1.12Å
C2'	H2'2	sing	1.09Å	1.11Å
C2	O2	sing	1.43Å	1.42Å
C2	C3	sing	1.53Å	1.56Å
C2	C1	sing	1.53Å	1.54Å
C2	H2	sing	1.09Å	1.11Å
O2	HO2	sing	0.97Å	0.95Å
C3	O3	sing	1.43Å	1.45Å
C3	C4	sing	1.53Å	1.54Å
C3	H3	sing	1.09Å	1.11Å
O3	HO3	sing	0.97Å	0.95Å
C4	O4	sing	1.43Å	1.42Å
C4	C5	sing	1.53Å	1.53Å
C4	H4	sing	1.09Å	1.12Å
O4	HO4	sing	0.97Å	0.95Å
C5	O5	sing	1.43Å	1.45Å
C5	C6	sing	1.53Å	1.54Å
C5	H5	sing	1.09Å	1.11Å
O5	C1	sing	1.42Å	1.44Å
C6	O6	sing	1.43Å	1.45Å
C6	H61	sing	1.09Å	1.12Å
C6	H62	sing	1.09Å	1.11Å
O6	HO6	sing	0.97Å	0.95Å
O1	C1	sing	1.43Å	1.39Å
C1	H1	sing	1.09Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C4'	C3'	C2'	114.5°	109.5°
C4'	C3'	H3'1	110.4°	109.4°
C4'	C3'	H3'2	110.4°	109.5°
C3'	C4'	C5'	111.0°	109.5°
C3'	C4'	H4'1	111.6°	109.4°
C3'	C4'	H4'2	111.6°	109.5°
C2'	C3'	H3'1	110.4°	109.4°
C2'	C3'	H3'2	110.3°	109.5°
C3'	C2'	C1'	115.7°	109.6°
C3'	C2'	H2'1	109.9°	109.5°
C3'	C2'	H2'2	110.0°	109.5°
H3'1	C3'	H3'2	99.9°	109.4°
C5'	C4'	H4'1	111.7°	109.5°
C5'	C4'	H4'2	111.7°	109.5°
C4'	C5'	H5'1	111.0°	109.4°
C4'	C5'	H5'2	111.6°	109.5°
C4'	C5'	H5'3	111.6°	109.5°
H4'1	C4'	H4'2	98.7°	109.4°
H5'1	C5'	H5'2	111.7°	109.4°
H5'1	C5'	H5'3	111.7°	109.6°
H5'2	C5'	H5'3	98.7°	109.5°
C2'	C1'	O1	116.5°	109.6°
C2'	C1'	H1'1	109.6°	109.5°
C2'	C1'	H1'2	109.7°	109.4°
C1'	C2'	H2'1	109.9°	109.5°
C1'	C2'	H2'2	109.9°	109.5°
O1	C1'	H1'1	109.6°	109.4°
O1	C1'	H1'2	109.7°	109.4°
C1'	O1	C1	115.8°	106.8°
H1'1	C1'	H1'2	100.5°	109.5°
H2'1	C2'	H2'2	100.2°	109.4°
O2	C2	C3	110.1°	109.6°
O2	C2	C1	109.8°	109.6°
O2	C2	H2	109.8°	109.6°
C2	O2	HO2	110.1°	106.8°
C3	C2	C1	112.2°	109.0°
C3	C2	H2	107.2°	109.6°
C2	C3	O3	111.6°	109.7°
C2	C3	C4	111.6°	108.6°
C2	C3	H3	106.2°	109.7°
C1	C2	H2	107.6°	109.5°
C2	C1	O5	111.2°	109.8°
C2	C1	O1	110.7°	109.4°
C2	C1	H1	107.2°	109.4°
O3	C3	C4	108.3°	109.6°
O3	C3	H3	109.5°	109.6°
C3	O3	HO3	111.6°	106.8°
C4	C3	H3	109.6°	109.6°
C3	C4	O4	109.1°	109.6°
C3	C4	C5	111.1°	109.0°
C3	C4	H4	108.7°	109.5°
O4	C4	C5	109.7°	109.5°
O4	C4	H4	110.1°	109.6°
C4	O4	HO4	109.1°	106.8°
C5	C4	H4	108.1°	109.6°
C4	C5	O5	109.6°	109.8°
C4	C5	C6	114.0°	109.3°
C4	C5	H5	105.7°	109.5°
O5	C5	C6	107.7°	109.4°
O5	C5	H5	112.3°	109.4°
C5	O5	C1	113.1°	107.6°
C6	C5	H5	107.6°	109.4°
C5	C6	O6	110.8°	109.5°
C5	C6	H61	111.8°	109.4°
C5	C6	H62	111.7°	109.5°
O5	C1	O1	108.9°	109.4°
O5	C1	H1	109.1°	109.4°
O6	C6	H61	111.7°	109.5°
O6	C6	H62	111.7°	109.5°
C6	O6	HO6	110.8°	106.8°
H61	C6	H62	98.7°	109.4°
O1	C1	H1	109.7°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C4'	C3'	C2'	H3'1	125.3°	120.0°
C4'	C3'	C2'	H3'2	125.3°	120.1°
C4'	C3'	H3'1	H3'2	116.3°	120.0°
C3'	C4'	C5'	H4'1	125.2°	120.0°
C3'	C4'	C5'	H4'2	125.2°	120.0°
C3'	C4'	H4'1	H4'2	117.5°	120.0°
C3'	C4'	C5'	H5'1	180.0°	179.9°
C3'	C4'	C5'	H5'2	54.7°	60.0°
C3'	C4'	C5'	H5'3	54.7°	60.0°
C4'	C3'	C2'	C1'	80.2°	180.0°
C4'	C3'	C2'	H2'1	154.6°	60.0°
C4'	C3'	C2'	H2'2	45.1°	59.9°
C2'	C3'	H3'1	H3'2	116.2°	119.9°
C2'	C3'	C4'	C5'	180.0°	180.0°
C2'	C3'	C4'	H4'1	54.7°	60.0°
C2'	C3'	C4'	H4'2	54.7°	60.0°
C3'	C2'	C1'	H2'1	125.2°	120.0°
C3'	C2'	C1'	H2'2	125.3°	120.0°
C3'	C2'	C1'	O1	69.6°	180.0°
C3'	C2'	C1'	H1'1	165.1°	60.0°
C3'	C2'	C1'	H1'2	55.7°	60.0°
C3'	C2'	H2'1	H2'2	115.7°	119.9°
H3'1	C3'	C4'	C5'	54.7°	60.0°
H3'1	C3'	C4'	H4'1	70.5°	180.0°
H3'1	C3'	C4'	H4'2	180.0°	60.0°
H3'1	C3'	C2'	C1'	45.1°	60.0°
H3'1	C3'	C2'	H2'1	80.2°	180.0°
H3'1	C3'	C2'	H2'2	170.4°	60.1°
H3'2	C3'	C4'	C5'	54.7°	60.0°
H3'2	C3'	C4'	H4'1	180.0°	60.1°
H3'2	C3'	C4'	H4'2	70.5°	180.0°
H3'2	C3'	C2'	C1'	154.5°	59.9°
H3'2	C3'	C2'	H2'1	29.2°	60.1°
H3'2	C3'	C2'	H2'2	80.2°	180.0°
C5'	C4'	H4'1	H4'2	117.6°	120.0°
C4'	C5'	H5'1	H5'2	125.3°	119.9°
C4'	C5'	H5'1	H5'3	125.3°	120.0°
C4'	C5'	H5'2	H5'3	117.5°	120.0°
H4'1	C4'	C5'	H5'1	54.7°	59.9°
H4'1	C4'	C5'	H5'2	179.9°	60.0°
H4'1	C4'	C5'	H5'3	70.5°	180.0°
H4'2	C4'	C5'	H5'1	54.8°	60.1°
H4'2	C4'	C5'	H5'2	70.5°	180.0°
H4'2	C4'	C5'	H5'3	179.9°	60.0°
H5'1	C5'	H5'2	H5'3	117.6°	120.1°
C2'	C1'	O1	H1'1	125.2°	120.0°
C2'	C1'	O1	H1'2	125.3°	120.0°
C2'	C1'	H1'1	H1'2	115.5°	120.0°
C1'	C2'	H2'1	H2'2	115.7°	119.9°
C2'	C1'	O1	C1	61.3°	180.0°
O1	C1'	H1'1	H1'2	115.4°	120.0°
O1	C1'	C2'	H2'1	55.6°	59.9°
O1	C1'	C2'	H2'2	165.1°	60.0°
C1'	O1	C1	C2	163.9°	179.8°
C1'	O1	C1	O5	73.6°	59.9°
C1'	O1	C1	H1	45.7°	60.0°
H1'1	C1'	C2'	H2'1	69.6°	180.0°
H1'1	C1'	C2'	H2'2	39.8°	60.0°
H1'1	C1'	O1	C1	63.9°	60.0°
H1'2	C1'	C2'	H2'1	179.1°	60.0°
H1'2	C1'	C2'	H2'2	69.7°	180.0°
H1'2	C1'	O1	C1	173.4°	60.0°
O2	C2	C3	C1	122.6°	120.0°
O2	C2	C3	H2	119.4°	120.2°
O2	C2	C1	H2	119.4°	120.2°
O2	C2	C3	O3	44.3°	53.6°
O2	C2	C3	C4	77.1°	66.2°
O2	C2	C3	H3	163.5°	174.0°
O2	C2	C1	O5	73.0°	58.6°
O2	C2	C1	O1	165.8°	178.7°
O2	C2	C1	H1	46.2°	61.5°
C3	C2	C1	H2	117.7°	119.9°
C3	C2	O2	HO2	180.0°	180.0°
C2	C3	O3	C4	123.2°	119.2°
C2	C3	O3	H3	117.3°	120.5°
C2	C3	C4	H3	117.3°	119.8°
C2	C3	O3	HO3	180.0°	60.7°
C2	C3	C4	O4	170.2°	173.7°
C2	C3	C4	C5	49.1°	53.8°
C2	C3	C4	H4	69.7°	66.1°
C3	C2	C1	O5	49.9°	61.3°
C3	C2	C1	O1	71.3°	58.8°
C3	C2	C1	H1	169.0°	178.6°
C1	C2	O2	HO2	55.9°	60.4°
C1	C2	C3	O3	166.9°	173.5°
C1	C2	C3	C4	45.5°	53.8°
C1	C2	C3	H3	73.8°	66.0°
C2	C1	O5	C5	60.0°	67.6°
C2	C1	O5	O1	122.2°	120.1°
C2	C1	O5	H1	118.1°	120.1°
C2	C1	O1	H1	118.1°	119.8°
H2	C2	O2	HO2	62.2°	59.8°
H2	C2	C3	O3	75.1°	66.6°
H2	C2	C3	C4	163.5°	173.6°
H2	C2	C3	H3	44.1°	53.8°
H2	C2	C1	O5	167.6°	178.9°
H2	C2	C1	O1	46.4°	61.1°
H2	C2	C1	H1	73.2°	58.8°
O3	C3	C4	H3	119.4°	120.3°
O3	C3	C4	O4	66.5°	66.4°
O3	C3	C4	C5	172.4°	173.7°
O3	C3	C4	H4	53.6°	53.8°
C4	C3	O3	HO3	56.7°	180.0°
C3	C4	O4	C5	122.0°	119.5°
C3	C4	O4	H4	119.2°	120.2°
C3	C4	C5	H4	119.2°	119.9°
C3	C4	O4	HO4	179.9°	60.4°
C3	C4	C5	O5	57.2°	61.3°
C3	C4	C5	C6	178.1°	178.7°
C3	C4	C5	H5	64.0°	58.8°
H3	C3	O3	HO3	62.8°	59.7°
H3	C3	C4	O4	52.9°	53.9°
H3	C3	C4	C5	68.2°	66.0°
H3	C3	C4	H4	173.0°	174.1°
O4	C4	C5	H4	120.1°	120.2°
O4	C4	C5	O5	178.0°	178.8°
O4	C4	C5	C6	61.2°	58.8°
O4	C4	C5	H5	56.8°	61.1°
C5	C4	O4	HO4	58.1°	179.9°
C4	C5	O5	C6	124.6°	120.0°
C4	C5	O5	H5	117.1°	120.2°
C4	C5	C6	H5	116.9°	119.9°
C4	C5	O5	C1	63.6°	67.6°
C4	C5	C6	O6	38.1°	179.7°
C4	C5	C6	H61	163.3°	59.7°
C4	C5	C6	H62	87.2°	60.2°
H4	C4	O4	HO4	60.7°	59.8°
H4	C4	C5	O5	62.0°	58.6°
H4	C4	C5	C6	58.9°	61.5°
H4	C4	C5	H5	176.9°	178.7°
O5	C5	C6	H5	121.3°	119.8°
O5	C5	C6	O6	83.8°	60.0°
O5	C5	C6	H61	41.5°	180.0°
O5	C5	C6	H62	150.9°	60.1°
C5	O5	C1	O1	62.2°	52.5°
C5	O5	C1	H1	178.1°	172.3°
C6	C5	O5	C1	171.8°	172.4°
C5	C6	O6	H61	125.3°	120.0°
C5	C6	O6	H62	125.3°	120.0°
C5	C6	H61	H62	117.7°	119.9°
C5	C6	O6	HO6	180.0°	180.0°
H5	C5	O5	C1	53.5°	52.6°
H5	C5	C6	O6	154.9°	59.8°
H5	C5	C6	H61	79.8°	60.2°
H5	C5	C6	H62	29.7°	179.8°
O5	C1	O1	H1	119.3°	119.9°
O6	C6	H61	H62	117.6°	120.0°
H61	C6	O6	HO6	54.7°	60.0°
H62	C6	O6	HO6	54.8°	60.0°

Definition date:	2002-07-10
Last modified:	2020-07-17
Release status:	REL
Processing site:	RCSB
Derived from:	1M5J