OP1
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CAK | CAM | sing | 1.55Å | 1.50Å | |
| CAK | CAQ | sing | 1.51Å | 1.49Å | |
| OAM | CAQ | doub | 1.21Å | 1.36Å | |
| CAM | CAU | sing | 1.55Å | 1.49Å | |
| CAQ | N | sing | 1.34Å | 1.44Å | |
| OAH | CAS | doub | 1.21Å | 1.28Å | |
| CAS | OAE | sing | 1.34Å | 1.25Å | |
| CAS | CAU | sing | 1.51Å | 1.47Å | |
| CAU | N | sing | 1.47Å | 1.45Å | |
| N | CA | sing | 1.47Å | 1.47Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | CB | sing | 1.53Å | 1.52Å | |
| OXT | C | doub | 1.21Å | 1.28Å | |
| C | O | sing | 1.34Å | 1.26Å | |
| CB | CG | sing | 1.53Å | 1.48Å | |
| CG | CD | sing | 1.53Å | 1.48Å | |
| CD | NE | sing | 1.46Å | 1.47Å | |
| NE | CZ | sing | 1.37Å | 1.43Å | |
| CZ | NH2 | doub | 1.30Å | 1.34Å | |
| CZ | NH1 | sing | 1.37Å | 1.32Å | |
| CA | H1 | sing | 1.09Å | 1.10Å | |
| O | H2 | sing | 0.97Å | 0.95Å | |
| CB | H3 | sing | 1.09Å | 1.10Å | |
| CB | H4 | sing | 1.09Å | 1.10Å | |
| CG | H5 | sing | 1.09Å | 1.10Å | |
| CG | H6 | sing | 1.09Å | 1.10Å | |
| CD | H7 | sing | 1.09Å | 1.10Å | |
| CD | H8 | sing | 1.09Å | 1.10Å | |
| NE | H9 | sing | 0.97Å | 1.00Å | |
| NH2 | H10 | sing | 0.97Å | 1.00Å | |
| NH1 | H12 | sing | 0.97Å | 1.00Å | |
| NH1 | H13 | sing | 0.97Å | 1.00Å | |
| CAU | H14 | sing | 1.09Å | 1.10Å | |
| CAM | H15 | sing | 1.09Å | 1.10Å | |
| CAM | H16 | sing | 1.09Å | 1.10Å | |
| CAK | H17 | sing | 1.09Å | 1.10Å | |
| CAK | H18 | sing | 1.09Å | 1.10Å | |
| OAE | H19 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CAM | CAK | CAQ | 101.9° | 104.3° |
| CAK | CAM | CAU | 106.6° | 101.8° |
| CAK | CAM | H15 | 110.2° | 111.0° |
| CAK | CAM | H16 | 110.2° | 111.1° |
| CAM | CAK | H17 | 111.3° | 110.5° |
| CAM | CAK | H18 | 111.3° | 110.5° |
| CAK | CAQ | OAM | 122.3° | 124.9° |
| CAK | CAQ | N | 110.6° | 110.1° |
| CAQ | CAK | H17 | 111.3° | 110.7° |
| CAQ | CAK | H18 | 111.3° | 110.3° |
| OAM | CAQ | N | 121.4° | 124.9° |
| CAM | CAU | CAS | 108.9° | 110.3° |
| CAM | CAU | N | 106.0° | 105.4° |
| CAM | CAU | H14 | 110.4° | 110.3° |
| CAU | CAM | H15 | 110.2° | 111.0° |
| CAU | CAM | H16 | 110.2° | 110.9° |
| CAQ | N | CAU | 107.3° | 111.3° |
| CAQ | N | CA | 118.5° | 124.4° |
| OAH | CAS | OAE | 118.3° | 120.0° |
| OAH | CAS | CAU | 121.3° | 120.0° |
| OAE | CAS | CAU | 120.4° | 120.0° |
| CAS | OAE | H19 | 109.5° | 117.0° |
| CAS | CAU | N | 109.8° | 110.3° |
| CAS | CAU | H14 | 110.7° | 110.2° |
| CAU | N | CA | 133.8° | 124.3° |
| N | CAU | H14 | 110.9° | 110.2° |
| N | CA | C | 111.0° | 109.5° |
| N | CA | CB | 113.9° | 109.5° |
| N | CA | H1 | 107.9° | 109.5° |
| C | CA | CB | 109.4° | 109.5° |
| CA | C | OXT | 119.0° | 120.0° |
| CA | C | O | 119.0° | 120.0° |
| C | CA | H1 | 107.2° | 109.5° |
| CA | CB | CG | 115.2° | 109.5° |
| CB | CA | H1 | 107.3° | 109.5° |
| CA | CB | H3 | 108.0° | 109.5° |
| CA | CB | H4 | 108.0° | 109.4° |
| OXT | C | O | 121.9° | 120.0° |
| C | O | H2 | 109.5° | 117.0° |
| CB | CG | CD | 111.3° | 109.5° |
| CG | CB | H3 | 108.0° | 109.5° |
| CG | CB | H4 | 108.0° | 109.5° |
| CB | CG | H5 | 109.0° | 109.5° |
| CB | CG | H6 | 109.0° | 109.5° |
| CG | CD | NE | 107.3° | 109.5° |
| CD | CG | H5 | 109.0° | 109.5° |
| CD | CG | H6 | 109.0° | 109.4° |
| CG | CD | H7 | 110.0° | 109.5° |
| CG | CD | H8 | 110.0° | 109.5° |
| CD | NE | CZ | 119.8° | 120.0° |
| NE | CD | H7 | 110.0° | 109.5° |
| NE | CD | H8 | 110.0° | 109.5° |
| CD | NE | H9 | 120.1° | 120.0° |
| NE | CZ | NH2 | 114.0° | 120.0° |
| NE | CZ | NH1 | 122.3° | 120.0° |
| CZ | NE | H9 | 120.1° | 120.0° |
| NH2 | CZ | NH1 | 123.7° | 120.0° |
| CZ | NH2 | H10 | 112.0° | 120.0° |
| CZ | NH1 | H12 | 120.0° | 120.0° |
| CZ | NH1 | H13 | 120.0° | 120.0° |
| H3 | CB | H4 | 109.4° | 109.5° |
| H5 | CG | H6 | 109.5° | 109.5° |
| H7 | CD | H8 | 109.5° | 109.4° |
| H12 | NH1 | H13 | 120.0° | 120.0° |
| H15 | CAM | H16 | 109.5° | 110.8° |
| H17 | CAK | H18 | 109.5° | 110.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CAM | CAK | CAQ | H17 | 118.8° | 118.8° |
| CAM | CAK | CAQ | H18 | 118.8° | 118.6° |
| CAM | CAK | CAQ | OAM | 171.7° | 163.8° |
| CAK | CAM | CAU | H15 | 119.5° | 118.1° |
| CAK | CAM | CAU | H16 | 119.5° | 118.2° |
| CAM | CAK | CAQ | N | 17.9° | 15.9° |
| CAK | CAM | CAU | CAS | 91.7° | 93.6° |
| CAK | CAM | CAU | N | 26.4° | 25.4° |
| CAK | CAM | CAU | H14 | 146.6° | 144.4° |
| CAK | CAM | H15 | H16 | 121.3° | 123.9° |
| CAM | CAK | H17 | H18 | 123.5° | 122.6° |
| CAK | CAQ | OAM | N | 151.0° | 179.6° |
| CAQ | CAK | CAM | CAU | 26.6° | 24.6° |
| CAK | CAQ | N | CAU | 2.3° | 0.8° |
| CAK | CAQ | N | CA | 171.8° | 179.4° |
| CAQ | CAK | CAM | H15 | 146.1° | 93.5° |
| CAQ | CAK | CAM | H16 | 93.0° | 142.7° |
| CAQ | CAK | H17 | H18 | 123.5° | 122.5° |
| OAM | CAQ | N | CAU | 156.3° | 179.5° |
| OAM | CAQ | N | CA | 17.8° | 0.2° |
| OAM | CAQ | CAK | H17 | 69.5° | 45.0° |
| OAM | CAQ | CAK | H18 | 53.0° | 77.6° |
| CAM | CAU | N | CAQ | 14.8° | 17.3° |
| CAM | CAU | CAS | OAH | 102.4° | 116.1° |
| CAM | CAU | CAS | OAE | 75.8° | 63.9° |
| CAM | CAU | CAS | N | 115.7° | 116.1° |
| CAM | CAU | CAS | H14 | 121.6° | 122.0° |
| CAM | CAU | N | H14 | 119.9° | 119.0° |
| CAM | CAU | N | CA | 172.4° | 163.0° |
| CAU | CAM | H15 | H16 | 121.4° | 123.7° |
| CAU | CAM | CAK | H17 | 145.4° | 143.5° |
| CAU | CAM | CAK | H18 | 92.2° | 93.9° |
| CAQ | N | CAU | CAS | 102.7° | 101.8° |
| CAQ | N | CAU | CA | 172.8° | 179.7° |
| CAQ | N | CA | C | 58.5° | 59.7° |
| CAQ | N | CA | CB | 177.6° | 60.3° |
| CAQ | N | CA | H1 | 58.7° | 179.7° |
| CAQ | N | CAU | H14 | 134.7° | 136.3° |
| N | CAQ | CAK | H17 | 136.7° | 134.7° |
| N | CAQ | CAK | H18 | 100.8° | 102.8° |
| OAH | CAS | OAE | CAU | 178.3° | 180.0° |
| OAH | CAS | CAU | N | 13.2° | 0.0° |
| OAH | CAS | CAU | H14 | 136.0° | 121.9° |
| OAH | CAS | OAE | H19 | 0.0° | 0.0° |
| OAE | CAS | CAU | N | 168.5° | 180.0° |
| OAE | CAS | CAU | H14 | 45.7° | 58.1° |
| CAS | CAU | N | H14 | 122.6° | 121.9° |
| CAS | CAU | N | CA | 70.1° | 77.9° |
| CAS | CAU | CAM | H15 | 27.9° | 148.3° |
| CAS | CAU | CAM | H16 | 148.8° | 24.6° |
| CAU | CAS | OAE | H19 | 178.4° | 180.0° |
| CAU | N | CA | C | 129.4° | 120.0° |
| CAU | N | CA | CB | 5.5° | 120.0° |
| CAU | N | CA | H1 | 113.5° | 0.0° |
| N | CAU | CAM | H15 | 145.9° | 92.7° |
| N | CAU | CAM | H16 | 93.2° | 143.6° |
| N | CA | C | CB | 126.5° | 120.0° |
| N | CA | C | H1 | 117.6° | 120.0° |
| N | CA | CB | H1 | 119.3° | 120.0° |
| N | CA | C | OXT | 17.9° | 0.1° |
| N | CA | C | O | 165.9° | 180.0° |
| N | CA | CB | CG | 75.9° | 65.0° |
| N | CA | CB | H3 | 163.2° | 55.0° |
| N | CA | CB | H4 | 44.9° | 175.0° |
| CA | N | CAU | H14 | 52.5° | 44.0° |
| C | CA | CB | H1 | 115.9° | 120.0° |
| CA | C | OXT | O | 176.1° | 179.9° |
| C | CA | CB | CG | 48.9° | 175.0° |
| CA | C | O | H2 | 176.1° | 180.0° |
| C | CA | CB | H3 | 72.0° | 65.0° |
| C | CA | CB | H4 | 169.7° | 55.0° |
| CB | CA | C | OXT | 108.6° | 119.9° |
| CB | CA | C | O | 67.6° | 60.0° |
| CA | CB | CG | H3 | 120.9° | 120.0° |
| CA | CB | CG | H4 | 120.8° | 120.0° |
| CA | CB | CG | CD | 176.5° | 180.0° |
| CA | CB | H3 | H4 | 117.4° | 120.0° |
| CA | CB | CG | H5 | 63.3° | 60.0° |
| CA | CB | CG | H6 | 56.2° | 60.0° |
| OXT | C | CA | H1 | 135.4° | 120.0° |
| OXT | C | O | H2 | 0.0° | 0.1° |
| O | C | CA | H1 | 48.4° | 60.0° |
| CB | CG | CD | H5 | 120.3° | 120.0° |
| CB | CG | CD | H6 | 120.3° | 120.0° |
| CB | CG | CD | NE | 161.4° | 180.0° |
| CG | CB | CA | H1 | 164.8° | 55.0° |
| CG | CB | H3 | H4 | 117.4° | 120.0° |
| CB | CG | H5 | H6 | 119.1° | 120.0° |
| CB | CG | CD | H7 | 78.9° | 60.0° |
| CB | CG | CD | H8 | 41.8° | 60.0° |
| CG | CD | NE | H7 | 119.7° | 120.0° |
| CG | CD | NE | H8 | 119.7° | 120.0° |
| CG | CD | NE | CZ | 177.6° | 180.0° |
| CD | CG | CB | H3 | 55.6° | 60.0° |
| CD | CG | CB | H4 | 62.7° | 60.0° |
| CD | CG | H5 | H6 | 119.2° | 120.0° |
| CG | CD | H7 | H8 | 121.0° | 120.0° |
| CG | CD | NE | H9 | 2.4° | 0.0° |
| CD | NE | CZ | H9 | 180.0° | 180.0° |
| CD | NE | CZ | NH2 | 177.5° | 0.0° |
| CD | NE | CZ | NH1 | 3.0° | 180.0° |
| NE | CD | CG | H5 | 41.2° | 60.0° |
| NE | CD | CG | H6 | 78.3° | 60.0° |
| NE | CD | H7 | H8 | 121.0° | 120.0° |
| NE | CZ | NH2 | NH1 | 179.5° | 179.9° |
| CZ | NE | CD | H7 | 57.9° | 60.0° |
| CZ | NE | CD | H8 | 62.8° | 60.0° |
| NE | CZ | NH2 | H10 | 179.5° | 180.0° |
| NE | CZ | NH1 | H12 | 179.5° | 0.0° |
| NE | CZ | NH1 | H13 | 0.5° | 180.0° |
| NH2 | CZ | NE | H9 | 2.5° | 180.0° |
| NH2 | CZ | NH1 | H12 | 0.0° | 180.0° |
| NH2 | CZ | NH1 | H13 | 180.0° | 0.1° |
| NH1 | CZ | NE | H9 | 177.0° | 0.0° |
| NH1 | CZ | NH2 | H10 | 0.0° | 0.1° |
| CZ | NH1 | H12 | H13 | 180.0° | 180.0° |
| H1 | CA | CB | H3 | 43.9° | 175.0° |
| H1 | CA | CB | H4 | 74.4° | 65.0° |
| H3 | CB | CG | H5 | 175.9° | 180.0° |
| H3 | CB | CG | H6 | 64.7° | 60.0° |
| H4 | CB | CG | H5 | 57.6° | 60.0° |
| H4 | CB | CG | H6 | 177.0° | 180.0° |
| H5 | CG | CD | H7 | 160.8° | 180.0° |
| H5 | CG | CD | H8 | 78.5° | 60.0° |
| H6 | CG | CD | H7 | 41.4° | 60.0° |
| H6 | CG | CD | H8 | 162.0° | 180.0° |
| H7 | CD | NE | H9 | 122.1° | 120.0° |
| H8 | CD | NE | H9 | 117.2° | 120.0° |
| H14 | CAU | CAM | H15 | 93.9° | 26.2° |
| H14 | CAU | CAM | H16 | 27.1° | 97.4° |
| H15 | CAM | CAK | H17 | 95.1° | 25.4° |
| H15 | CAM | CAK | H18 | 27.3° | 148.0° |
| H16 | CAM | CAK | H17 | 25.8° | 98.4° |
| H16 | CAM | CAK | H18 | 148.2° | 24.2° |
