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OOP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PO1Psing1.61Å1.53Å
PO2Psing1.61Å1.53Å
PO3Pdoub1.48Å1.49Å
PO5'sing1.61Å1.62Å
N1C2sing1.34Å1.36Å
N1C10doub1.31Å1.37Å
C2O2doub1.22Å1.26Å
C2N3sing1.34Å1.37Å
N3C4sing1.35Å1.36Å
C4O4doub1.21Å1.24Å
C4C4Asing1.50Å1.51Å
N5C4Asing1.47Å1.44Å
N5C5Asing1.41Å1.34Å
C6C7doub1.38Å1.39ÅAromatic
C6C5Asing1.38Å1.39ÅAromatic
C7C8sing1.38Å1.39ÅAromatic
C7C7Msing1.51Å1.51Å
C8C9doub1.38Å1.38ÅAromatic
C8C8Msing1.51Å1.55Å
C9C9Asing1.39Å1.38ÅAromatic
PAO11sing1.61Å1.60Å
PAO1Asing1.61Å1.53Å
PAO2Adoub1.48Å1.51Å
PAO3Asing1.61Å1.61Å
PBO1Bdoub1.48Å1.51Å
PBO2Bsing1.61Å1.52Å
PBO3Asing1.61Å1.60Å
PBO3Bsing1.61Å1.51Å
C1'N10sing1.46Å1.48Å
C1'C2'sing1.53Å1.55Å
C10N10sing1.35Å1.40Å
C10C4Asing1.51Å1.46Å
N10C9Asing1.40Å1.40Å
C11O11sing1.43Å1.40Å
C11C12sing1.53Å1.53Å
C12C16sing1.51Å1.51Å
C13C14sing1.53Å1.52Å
C13C16sing1.51Å1.49Å
C13C4Asing1.53Å1.58Å
C14O15sing1.43Å1.44Å
C15C16doub1.31Å1.30Å
C2'O2'sing1.43Å1.46Å
C2'C3'sing1.53Å1.55Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.53Å1.53Å
C4'O4'sing1.43Å1.41Å
C4'C5'sing1.53Å1.55Å
C5'O5'sing1.43Å1.46Å
C5AC9Adoub1.40Å1.40ÅAromatic
N3HN3sing0.97Å1.00Å
N5HN5sing0.97Å1.00Å
C6H6sing1.08Å1.08Å
C9H9sing1.08Å1.08Å
C1'H1'sing1.09Å1.10Å
C1'H1'Asing1.09Å1.10Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C12H12sing1.09Å1.10Å
C12H12Asing1.09Å1.10Å
C13H13sing1.09Å1.10Å
C14H14sing1.09Å1.10Å
C14H14Asing1.09Å1.10Å
C15H15sing1.08Å1.08Å
C15H15Asing1.08Å1.08Å
O15HO15sing0.97Å0.95Å
O1AHO1Asing0.97Å0.95Å
O1PHO1Psing0.97Å0.95Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
O2BHO2Bsing0.97Å0.95Å
O2PHO2Psing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
O3BHO3Bsing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
O4'HO4'sing0.97Å0.95Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
C7MH7Msing1.09Å1.10Å
C7MH7MAsing1.09Å1.10Å
C7MH7MBsing1.09Å1.10Å
C8MH8Msing1.09Å1.10Å
C8MH8MAsing1.09Å1.10Å
C8MH8MBsing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1PPO2P113.3°109.4°
O1PPO3P114.3°109.5°
O1PPO5'100.6°109.5°
PO1PHO1P109.5°114.0°
O2PPO3P112.3°109.5°
O2PPO5'106.9°109.5°
PO2PHO2P109.5°114.0°
O3PPO5'108.5°109.5°
PO5'C5'121.1°123.0°
C2N1C10118.7°122.3°
N1C2O2117.3°119.1°
N1C2N3120.4°121.9°
N1C10N10118.1°120.4°
N1C10C4A117.9°120.8°
O2C2N3119.7°119.0°
C2N3C4119.8°120.9°
C2N3HN3120.1°119.6°
N3C4O4122.0°119.7°
N3C4C4A119.1°120.5°
C4N3HN3120.1°119.5°
O4C4C4A118.8°119.7°
C4C4AN5107.8°111.7°
C4C4AC10106.2°110.8°
C4C4AC13115.6°108.8°
C4AN5C5A119.2°116.5°
N5C4AC10111.6°108.6°
N5C4AC13108.3°108.8°
C4AN5HN5106.4°121.8°
N5C5AC6119.6°120.8°
N5C5AC9A121.6°118.9°
C5AN5HN5106.3°121.7°
C7C6C5A119.5°119.7°
C6C7C8120.1°120.1°
C6C7C7M115.7°119.9°
C7C6H6120.2°120.1°
C6C5AC9A118.7°120.3°
C5AC6H6120.2°120.2°
C8C7C7M119.4°119.9°
C7C8C9117.8°120.4°
C7C8C8M122.7°119.8°
C7C7MH7M109.5°109.5°
C7C7MH7MA109.5°109.5°
C7C7MH7MB109.5°109.5°
C9C8C8M117.1°119.8°
C8C9C9A120.8°119.9°
C8C9H9119.6°120.0°
C8C8MH8M109.5°109.5°
C8C8MH8MA109.5°109.5°
C8C8MH8MB109.4°109.4°
C9C9AN10119.4°120.3°
C9C9AC5A120.1°119.5°
C9AC9H9119.6°120.0°
O11PAO1A108.4°109.5°
O11PAO2A113.6°109.5°
O11PAO3A98.0°109.4°
PAO11C11118.5°123.0°
O1APAO2A121.4°109.5°
O1APAO3A109.9°109.5°
PAO1AHO1A109.5°114.0°
O2APAO3A102.8°109.5°
PAO3APB121.8°134.0°
O1BPBO2B114.8°109.5°
O1BPBO3A99.0°109.5°
O1BPBO3B112.7°109.5°
O2BPBO3A108.8°109.5°
O2BPBO3B117.2°109.4°
PBO2BHO2B109.5°114.0°
O3APBO3B101.6°109.5°
PBO3BHO3B109.5°114.0°
N10C1'C2'110.7°109.5°
C1'N10C10121.4°120.0°
C1'N10C9A121.9°120.0°
N10C1'H1'109.1°109.4°
N10C1'H1'A109.1°109.5°
C1'C2'O2'111.2°109.5°
C1'C2'C3'113.2°109.4°
C2'C1'H1'109.1°109.5°
C2'C1'H1'A109.1°109.5°
C1'C2'H2'105.4°109.5°
N10C10C4A116.3°118.9°
C10N10C9A116.6°120.1°
C10C4AC13107.5°108.1°
N10C9AC5A119.8°120.2°
O11C11C12109.1°109.5°
O11C11H11109.6°109.5°
O11C11H11A109.6°109.5°
C11C12C16105.4°109.5°
C12C11H11109.6°109.5°
C12C11H11A109.6°109.4°
C11C12H12110.8°109.4°
C11C12H12A110.8°109.5°
C12C16C13122.6°120.0°
C12C16C15120.4°120.0°
C16C12H12110.9°109.5°
C16C12H12A110.8°109.5°
C14C13C16105.1°109.5°
C14C13C4A117.4°109.5°
C13C14O15106.4°109.4°
C14C13H13109.9°109.5°
C13C14H14110.5°109.5°
C13C14H14A110.5°109.4°
C16C13C4A116.4°109.5°
C13C16C15116.9°120.0°
C16C13H13111.1°109.4°
C4AC13H1396.6°109.5°
O15C14H14110.5°109.5°
O15C14H14A110.5°109.5°
C14O15HO15109.5°114.0°
C16C15H15120.0°120.1°
C16C15H15A120.0°119.9°
O2'C2'C3'108.7°109.5°
O2'C2'H2'110.2°109.5°
C2'O2'HO2'109.5°114.0°
C2'C3'O3'106.7°109.4°
C2'C3'C4'114.5°109.4°
C3'C2'H2'108.0°109.5°
C2'C3'H3'107.3°109.5°
O3'C3'C4'107.2°109.5°
O3'C3'H3'114.5°109.5°
C3'O3'HO3'109.5°114.1°
C3'C4'O4'106.1°109.5°
C3'C4'C5'114.9°109.5°
C4'C3'H3'106.8°109.5°
C3'C4'H4'107.9°109.5°
O4'C4'C5'108.7°109.5°
O4'C4'H4'114.2°109.4°
C4'O4'HO4'109.5°114.0°
C4'C5'O5'111.4°109.5°
C5'C4'H4'105.3°109.4°
C4'C5'H5'108.8°109.5°
C4'C5'H5'A108.8°109.4°
O5'C5'H5'108.8°109.5°
O5'C5'H5'A108.8°109.5°
H1'C1'H1'A109.9°109.5°
H11C11H11A109.4°109.4°
H12C12H12A108.1°109.5°
H14C14H14A108.4°109.5°
H15C15H15A120.0°120.0°
H5'C5'H5'A110.1°109.4°
H7MC7MH7MA109.5°109.4°
H7MC7MH7MB109.5°109.5°
H7MAC7MH7MB109.4°109.5°
H8MC8MH8MA109.5°109.5°
H8MC8MH8MB109.5°109.5°
H8MAC8MH8MB109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1PPO2PO3P131.3°120.0°
O1PPO2PO5'109.8°120.0°
O1PPO3PO5'111.3°120.0°
O1PPO5'C5'178.0°65.1°
O1PPO2PHO2P131.3°60.0°
O2PPO3PO5'117.9°120.0°
O2PPO5'C5'59.6°175.0°
O2PPO1PHO1P130.3°60.1°
O3PPO5'C5'61.7°55.0°
O3PPO1PHO1P0.0°180.0°
O3PPO2PHO2P0.0°60.0°
PO5'C5'C4'97.4°180.0°
O5'PO1PHO1P116.0°59.9°
O5'PO2PHO2P118.8°180.0°
PO5'C5'H5'22.6°60.0°
PO5'C5'H5'A142.6°60.0°
N1C2O2N3161.8°180.0°
N1C2N3C414.0°9.3°
C2N1C10N10179.0°172.8°
C2N1C10C4A30.7°8.1°
N1C2N3HN3166.0°170.6°
C10N1C2O2164.9°173.5°
C10N1C2N33.3°6.5°
N1C10C4AC448.0°17.7°
N1C10C4AN5165.2°140.8°
N1C10N10C1'1.6°13.2°
N1C10N10C4A148.9°179.1°
N1C10N10C9A177.0°166.7°
N1C10C4AC1376.2°101.4°
O2C2N3C4175.2°170.7°
O2C2N3HN34.8°9.5°
C2N3C4HN3180.0°179.9°
C2N3C4O4175.7°177.5°
C2N3C4C4A8.7°2.6°
N3C4O4C4A175.6°179.9°
N3C4C4AN5156.8°136.1°
N3C4C4AC1037.1°14.9°
N3C4C4AC1381.9°103.8°
O4C4C4AN527.4°44.0°
O4C4C4AC10147.1°165.2°
O4C4C4AC1393.8°76.1°
O4C4N3HN34.3°2.4°
C4C4AN5C10116.2°122.5°
C4C4AN5C13125.7°120.1°
C4C4AN5C5A149.2°168.8°
C4C4AC10N10163.1°163.2°
C4C4AC10C13124.2°119.1°
C4C4AC13C1433.7°62.5°
C4C4AC13C1692.2°57.5°
C4AC4N3HN3171.3°177.5°
C4C4AN5HN529.2°11.2°
C4C4AC13H13150.2°177.5°
C4AN5C5AHN5120.0°180.0°
C4AN5C5AC6168.4°151.9°
N5C4AC10N1045.9°40.1°
N5C4AC10C13118.6°117.9°
N5C4AC13C14154.7°175.7°
N5C4AC13C1628.8°64.3°
C4AN5C5AC9A8.7°27.8°
N5C4AC13H1388.8°55.6°
N5C5AC6C7178.0°179.2°
N5C5AC6C9A177.3°179.8°
N5C5AC9AC9175.8°179.1°
C5AN5C4AC1033.0°46.3°
N5C5AC9AN105.0°1.6°
C5AN5C4AC1385.1°71.1°
N5C5AC6H61.9°0.8°
C7C6C5AH6180.0°180.0°
C6C7C8C7M154.4°180.0°
C6C7C8C920.5°0.4°
C6C7C8C8M177.9°179.6°
C7C6C5AC9A0.8°0.5°
C6C7C7MH7M101.3°90.0°
C6C7C7MH7MA138.7°150.0°
C6C7C7MH7MB18.8°30.0°
C5AC6C7C813.1°0.0°
C5AC6C7C7M168.4°180.0°
C6C5AC9AC97.0°0.7°
C6C5AC9AN10177.8°178.7°
C6C5AN5HN571.5°28.0°
C7C8C9C8M162.6°180.0°
C7C8C9C9A14.3°0.2°
C8C7C6H6166.9°180.0°
C7C8C9H9165.7°179.9°
C8C7C7MH7M103.2°90.0°
C8C7C7MH7MA16.8°30.0°
C8C7C7MH7MB136.8°150.0°
C7C8C8MH8M79.8°90.0°
C7C8C8MH8MA160.2°150.0°
C7C8C8MH8MB40.2°30.0°
C7MC7C8C9175.0°179.6°
C7MC7C8C8M23.5°0.4°
C7MC7C6H611.6°0.0°
C7C7MH7MH7MA120.0°120.0°
C7C7MH7MH7MB120.0°120.0°
C7C7MH7MAH7MB120.0°120.1°
C8C9C9AH9180.0°179.9°
C8C9C9AN10170.1°179.0°
C8C9C9AC5A0.7°0.3°
C9C8C8MH8M81.9°90.0°
C9C8C8MH8MA38.1°30.0°
C9C8C8MH8MB158.1°150.0°
C8MC8C9C9A176.9°179.8°
C8MC8C9H93.1°0.1°
C8C8MH8MH8MA120.0°120.0°
C8C8MH8MH8MB120.0°120.0°
C8C8MH8MAH8MB120.0°120.0°
C9C9AN10C1'12.7°7.8°
C9C9AN10C10162.7°172.2°
C9C9AN10C5A170.9°179.3°
O11PAO1AO2A134.2°120.0°
O11PAO1AO3A106.0°120.0°
O11PAO2AO3A104.8°120.0°
O11PAO3APB73.5°160.0°
PAO11C11C1278.6°180.0°
PAO11C11H1141.4°60.0°
PAO11C11H11A161.5°60.0°
O11PAO1AHO1A134.2°60.0°
O1APAO2AO3A123.1°120.0°
O1APAO3APB39.4°80.0°
O1APAO11C11107.2°65.0°
O2APAO3APB170.0°40.0°
O2APAO11C1130.9°55.0°
O2APAO1AHO1A0.0°180.0°
PAO3APBO1B89.7°40.0°
PAO3APBO2B30.6°80.0°
PAO3APBO3B154.8°160.0°
O3APAO11C11138.7°175.0°
O3APAO1AHO1A119.7°60.0°
O1BPBO2BO3A109.9°120.0°
O1BPBO2BO3B135.8°120.0°
O1BPBO3AO3B115.6°120.0°
O1BPBO2BHO2B0.0°180.0°
O1BPBO3BHO3B0.0°60.0°
O2BPBO3AO3B124.2°119.9°
O2BPBO3BHO3B136.7°60.1°
O3APBO2BHO2B109.9°60.0°
O3APBO3BHO3B105.0°180.0°
O3BPBO2BHO2B135.8°60.0°
N10C1'C2'H1'120.0°120.0°
N10C1'C2'H1'A120.0°120.0°
C1'N10C10C9A175.4°180.0°
C1'N10C10C4A150.4°165.9°
N10C1'C2'O2'64.1°60.0°
N10C1'C2'C3'173.1°180.0°
C1'N10C9AC5A176.5°171.5°
N10C1'H1'H1'A119.5°120.0°
N10C1'C2'H2'55.3°60.0°
C2'C1'N10C1096.9°90.0°
C2'C1'N10C9A78.3°90.0°
C1'C2'O2'C3'125.3°120.0°
C1'C2'O2'H2'116.5°120.0°
C1'C2'C3'H2'116.3°120.0°
C1'C2'C3'O3'71.1°60.1°
C1'C2'C3'C4'47.4°180.0°
C2'C1'H1'H1'A119.5°120.0°
C1'C2'O2'HO2'180.0°59.9°
C1'C2'C3'H3'165.7°60.0°
N10C10C4AC1372.7°77.7°
C10N10C9AC5A8.1°8.4°
C10N10C1'H1'143.1°150.0°
C10N10C1'H1'A23.1°30.0°
C4AC10N10C9A34.1°14.2°
C10C4AC13C1484.6°57.9°
C10C4AC13C16149.5°177.9°
C10C4AN5HN587.0°133.7°
C10C4AC13H1331.9°62.1°
N10C9AC9H99.9°1.1°
C9AN10C1'H1'41.7°30.0°
C9AN10C1'H1'A161.7°150.0°
O11C11C12H11120.0°120.1°
O11C11C12H11A120.0°120.0°
O11C11C12C16167.7°176.5°
O11C11H11H11A120.2°120.0°
O11C11C12H1247.7°63.5°
O11C11C12H12A72.3°56.5°
C11C12C16H12120.0°120.0°
C11C12C16H12A120.0°120.0°
C11C12C16C1359.4°84.9°
C11C12C16C15117.3°95.1°
C12C11H11H11A120.2°119.9°
C11C12H12H12A121.6°120.0°
C12C16C13C1445.9°162.2°
C12C16C13C15176.8°180.0°
C12C16C13C4A86.0°77.8°
C16C12C11H1172.3°56.5°
C16C12C11H11A47.8°63.5°
C16C12H12H12A121.7°120.0°
C12C16C13H13164.7°42.2°
C12C16C15H15176.8°180.0°
C12C16C15H15A3.1°0.0°
C14C13C16C4A131.9°120.0°
C14C13C16H13118.8°120.0°
C14C13C4AH13116.5°120.0°
C13C14O15H14120.0°120.0°
C13C14O15H14A120.0°120.0°
C14C13C16C15130.9°17.8°
C13C14H14H14A121.3°120.0°
C13C14O15HO15180.0°180.0°
C16C13C4AH13117.6°120.0°
C16C13C14O15101.6°175.0°
C13C16C12H1260.6°155.1°
C13C16C12H12A179.4°35.1°
C16C13C14H1418.4°55.0°
C16C13C14H14A138.5°65.0°
C13C16C15H150.0°0.0°
C13C16C15H15A180.0°180.0°
C4AC13C14O15127.2°65.0°
C4AC13C16C1597.2°102.2°
C13C4AN5HN5154.9°108.9°
C4AC13C14H14112.8°175.0°
C4AC13C14H14A7.2°55.0°
O15C14C13H1318.1°55.0°
O15C14H14H14A121.2°120.1°
C15C16C12H12122.8°24.9°
C15C16C12H12A2.7°144.9°
C15C16C13H1312.1°137.8°
C16C15H15H15A180.0°180.0°
O2'C2'C3'H2'119.6°120.0°
O2'C2'C3'O3'53.0°180.0°
O2'C2'C3'C4'171.5°60.0°
O2'C2'C1'H1'175.9°180.0°
O2'C2'C1'H1'A55.8°60.0°
O2'C2'C3'H3'70.2°60.0°
C2'C3'O3'C4'123.2°119.9°
C2'C3'O3'H3'118.6°120.1°
C2'C3'C4'H3'118.5°120.0°
C2'C3'C4'O4'44.9°60.0°
C2'C3'C4'C5'165.0°180.0°
C3'C2'C1'H1'53.2°60.1°
C3'C2'C1'H1'A66.9°60.0°
C3'C2'O2'HO2'54.7°60.0°
C2'C3'O3'HO3'180.0°60.0°
C2'C3'C4'H4'77.9°60.0°
O3'C3'C4'H3'123.2°120.0°
O3'C3'C4'O4'163.2°180.0°
O3'C3'C4'C5'76.8°60.0°
O3'C3'C2'H2'172.6°59.9°
O3'C3'C4'H4'40.3°59.9°
C3'C4'O4'C5'124.0°120.0°
C3'C4'O4'H4'118.7°120.1°
C3'C4'C5'H4'118.5°120.0°
C3'C4'C5'O5'52.8°175.0°
C4'C3'C2'H2'68.9°60.0°
C4'C3'O3'HO3'56.8°59.9°
C3'C4'O4'HO4'98.9°60.0°
C3'C4'C5'H5'172.8°55.0°
C3'C4'C5'H5'A67.1°65.0°
O4'C4'C5'H4'122.8°119.9°
O4'C4'C5'O5'65.8°65.0°
O4'C4'C3'H3'73.6°60.0°
O4'C4'C5'H5'54.2°175.0°
O4'C4'C5'H5'A174.2°55.1°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A120.0°120.0°
C5'C4'C3'H3'46.4°60.0°
C5'C4'O4'HO4'25.1°60.0°
C4'C5'H5'H5'A119.2°119.9°
O5'C5'C4'H4'171.4°54.9°
O5'C5'H5'H5'A119.2°120.0°
C9AC5AN5HN5111.3°152.2°
C9AC5AC6H6179.2°179.4°
C5AC9AC9H9179.3°179.6°
H1'C1'C2'H2'64.7°60.0°
H1'AC1'C2'H2'175.2°180.0°
H11C11C12H12167.7°176.5°
H11C11C12H12A47.7°63.5°
H11AC11C12H1272.2°56.5°
H11AC11C12H12A167.7°176.5°
H13C13C14H14138.1°65.0°
H13C13C14H14A101.9°175.0°
H14C14O15HO1560.0°60.0°
H14AC14O15HO1560.0°60.0°
H2'C2'O2'HO2'63.5°179.9°
H2'C2'C3'H3'49.4°NaN°
H3'C3'O3'HO3'61.5°179.9°
H3'C3'C4'H4'163.5°180.0°
H4'C4'O4'HO4'142.3°179.9°
H4'C4'C5'H5'68.6°65.1°
H4'C4'C5'H5'A51.4°175.0°
H7MC7MH7MAH7MB120.0°120.0°
H8MC8MH8MAH8MB120.0°120.1°

222624

PDB entries from 2024-07-17

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