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SummaryGeometryRelated PDB entries

Obsolete: ONO

ONO was replaced with 1NJ on
Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O32C30doub1.22Å1.21Å
C30N31sing1.35Å1.31Å
C30C24sing1.48Å1.44Å
N31C34sing1.46Å1.45Å
N31H31sing0.97Å1.02Å
C34C66sing1.51Å1.50Å
C34C35sing1.53Å1.52Å
C34H34sing1.09Å1.11Å
C66O67doub1.21Å1.42Å
C66H66sing1.08Å1.10Å
C35C62sing1.53Å1.54Å
C35C37sing1.53Å1.57Å
C35C36sing1.53Å1.56Å
C62H621sing1.09Å1.11Å
C62H622sing1.09Å1.11Å
C62H623sing1.09Å1.11Å
C37H371sing1.09Å1.11Å
C37H372sing1.09Å1.11Å
C37H373sing1.09Å1.11Å
C36H361sing1.09Å1.12Å
C36H362sing1.09Å1.11Å
C36H363sing1.09Å1.12Å
C24C23doub1.40Å1.37ÅAromatic
C24C25sing1.39Å1.41ÅAromatic
C23C22sing1.38Å1.38ÅAromatic
C23H23sing1.08Å1.10Å
C22C21doub1.39Å1.38ÅAromatic
C22H22sing1.08Å1.10Å
C25C26doub1.39Å1.38ÅAromatic
C25H25sing1.08Å1.10Å
C26C27sing1.48Å1.51Å
C26C21sing1.41Å1.43ÅAromatic
C27O29sing1.35Å1.23Å
C27O28doub1.22Å1.24Å
O29H29sing0.97Å0.95Å
C21C20sing1.48Å1.47ÅAromatic
C20C19doub1.40Å1.44ÅAromatic
C20C15sing1.40Å1.34ÅAromatic
C19C18sing1.38Å1.39ÅAromatic
C19H19sing1.08Å1.10Å
C18C17doub1.40Å1.39ÅAromatic
C18H18sing1.08Å1.10Å
C17O44sing1.36Å1.35Å
C17N16sing1.32Å1.35ÅAromatic
O44C58sing1.43Å1.43Å
C58H581sing1.09Å1.11Å
C58H582sing1.09Å1.12Å
C58H583sing1.09Å1.11Å
N16C15doub1.33Å1.39ÅAromatic
C15C13sing1.48Å1.44Å
C13O14doub1.22Å1.16Å
C13N7sing1.35Å1.34Å
N7C1sing1.40Å1.40Å
N7HN7sing0.97Å1.02Å
C1C6doub1.39Å1.39ÅAromatic
C1C2sing1.39Å1.38ÅAromatic
C6C5sing1.38Å1.38ÅAromatic
C6H6sing1.08Å1.10Å
C5C4doub1.38Å1.39ÅAromatic
C5H5sing1.08Å1.10Å
C4C8sing1.51Å1.46Å
C4C3sing1.38Å1.39ÅAromatic
C8N10sing1.47Å1.33Å
C8N9sing1.47Å1.33Å
C8H8sing1.09Å1.11Å
N10H101sing1.01Å1.02Å
N10H102sing1.01Å1.02Å
N9HN91sing1.01Å1.02Å
N9HN92sing1.01Å1.02Å
C3C2doub1.38Å1.38ÅAromatic
C3H3sing1.08Å1.10Å
C2H2sing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O32C30N31116.2°120.0°
O32C30C24120.3°120.0°
N31C30C24123.2°120.0°
C30N31C34130.5°120.0°
C30N31H31108.4°120.0°
C30C24C23118.1°119.9°
C30C24C25121.4°119.9°
C34N31H31121.1°120.0°
N31C34C66114.0°109.5°
N31C34C35107.0°109.5°
N31C34H34115.8°109.4°
C66C34C35124.2°109.5°
C66C34H3492.6°109.5°
C34C66O67115.9°120.0°
C34C66H66124.4°120.0°
C35C34H34102.1°109.5°
C34C35C62109.0°109.5°
C34C35C37107.6°109.5°
C34C35C36114.1°109.5°
O67C66H66119.7°119.9°
C62C35C37109.0°109.5°
C62C35C36103.4°109.5°
C35C62H621112.4°109.5°
C35C62H622109.0°109.5°
C35C62H623112.4°109.4°
C37C35C36113.6°109.5°
C35C37H371112.9°109.5°
C35C37H372107.6°109.5°
C35C37H373112.9°109.5°
C35C36H361110.5°109.5°
C35C36H362114.1°109.4°
C35C36H363110.5°109.5°
H621C62H622112.4°109.5°
H621C62H62398.1°109.4°
H622C62H623112.4°109.5°
H371C37H372112.9°109.5°
H371C37H37397.5°109.4°
H372C37H373112.9°109.4°
H361C36H362110.5°109.5°
H361C36H36399.7°109.6°
H362C36H363110.5°109.5°
C23C24C25120.5°120.2°
C24C23C22120.5°120.3°
C24C23H23119.4°119.9°
C24C25C26119.4°119.8°
C24C25H25121.4°120.1°
C22C23H23120.1°119.8°
C23C22C21120.5°120.2°
C23C22H22119.7°119.9°
C21C22H22119.8°119.9°
C22C21C26119.6°119.8°
C22C21C20119.8°120.0°
C26C25H25119.2°120.0°
C25C26C27116.9°120.2°
C25C26C21119.4°119.7°
C27C26C21123.7°120.1°
C26C27O29119.6°120.0°
C26C27O28116.7°120.0°
C26C21C20120.2°120.1°
O29C27O28123.6°120.0°
C27O29H29119.6°120.0°
C21C20C19117.0°120.6°
C21C20C15124.7°120.5°
C19C20C15117.3°118.9°
C20C19C18121.8°118.5°
C20C19H19120.9°120.8°
C20C15N16122.1°120.4°
C20C15C13126.9°119.8°
C18C19H19117.3°120.7°
C19C18C17116.7°119.4°
C19C18H18121.4°120.4°
C17C18H18121.8°120.2°
C18C17O44117.1°119.4°
C18C17N16122.1°121.0°
O44C17N16120.8°119.5°
C17O44C58116.3°106.8°
C17N16C15119.8°121.7°
O44C58H581109.7°109.5°
O44C58H582116.3°109.5°
O44C58H583109.7°109.5°
H581C58H582109.7°109.5°
H581C58H583100.5°109.5°
H582C58H583109.7°109.4°
N16C15C13110.2°119.8°
C15C13O14119.7°120.0°
C15C13N7118.7°120.0°
O14C13N7120.9°120.0°
C13N7C1126.5°120.0°
C13N7HN7114.3°120.1°
C1N7HN7119.2°120.0°
N7C1C6122.8°120.1°
N7C1C2118.4°120.1°
C6C1C2118.6°119.8°
C1C6C5120.8°120.0°
C1C6H6120.1°120.0°
C1C2C3120.8°120.0°
C1C2H2119.3°120.0°
C5C6H6119.1°120.0°
C6C5C4120.5°120.0°
C6C5H5119.3°120.0°
C4C5H5120.2°120.0°
C5C4C8121.0°119.9°
C5C4C3118.5°120.2°
C8C4C3120.5°119.9°
C4C8N10121.0°109.5°
C4C8N9120.4°109.5°
C4C8H817.3°109.4°
C4C3C2120.7°120.1°
C4C3H3119.7°120.0°
N10C8N9118.6°109.5°
N10C8H8106.0°109.5°
C8N10H101108.1°106.7°
C8N10H102121.0°106.7°
N9C8H8134.6°109.5°
C8N9HN91108.3°106.7°
C8N9HN92120.4°106.7°
H101N10H102108.1°106.7°
HN91N9HN92108.3°106.7°
C2C3H3119.6°120.0°
C3C2H2119.9°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O32C30N31C24173.7°180.0°
O32C30N31C3414.2°0.0°
O32C30N31H31165.8°180.0°
O32C30C24C232.2°180.0°
O32C30C24C25176.7°0.1°
C30N31C34H31180.0°180.0°
C30N31C34C6654.0°85.0°
C30N31C34C35164.7°155.0°
C30N31C34H3451.6°35.0°
N31C30C24C23171.3°0.0°
N31C30C24C259.8°180.0°
C24C30N31C34172.1°180.0°
C24C30N31H317.9°0.1°
C30C24C23C25179.0°179.9°
C30C24C23C22179.3°180.0°
C30C24C23H230.6°0.0°
C30C24C25C26177.3°179.8°
C30C24C25H252.7°0.0°
N31C34C66C35133.7°120.0°
N31C34C66H34119.8°120.0°
N31C34C35H34122.1°119.9°
N31C34C66O6773.5°0.0°
N31C34C66H66106.5°180.0°
N31C34C35C62176.6°60.0°
N31C34C35C3758.6°180.0°
N31C34C35C3668.4°60.0°
H31N31C34C66126.0°95.1°
H31N31C34C3515.3°25.0°
H31N31C34H34128.4°144.9°
C66C34C35H34101.7°120.0°
C34C66O67H66180.0°180.0°
C66C34C35C6247.1°60.0°
C66C34C35C37165.1°60.0°
C66C34C35C3667.9°180.0°
C35C34C66O67152.8°120.0°
C35C34C66H6627.2°60.0°
C34C35C62C37117.1°120.0°
C34C35C62C36121.7°120.0°
C34C35C37C36127.3°120.0°
C34C35C62H62154.8°59.9°
C34C35C62H622180.0°180.0°
C34C35C62H62354.7°60.0°
C34C35C37H37154.7°60.0°
C34C35C37H372180.0°180.0°
C34C35C37H37354.7°60.0°
C34C35C36H36154.7°60.0°
C34C35C36H362180.0°180.0°
C34C35C36H36354.7°60.1°
H34C34C66O6746.3°120.0°
H34C34C66H66133.7°60.0°
H34C34C35C6254.5°180.0°
H34C34C35C3763.5°60.0°
H34C34C35C36169.5°60.0°
C62C35C37C36114.7°120.0°
C35C62H621H622123.4°120.0°
C35C62H621H623118.3°119.9°
C35C62H622H623125.3°120.0°
C62C35C37H371172.8°180.0°
C62C35C37H37262.0°60.0°
C62C35C37H37363.3°60.0°
C62C35C36H36163.5°60.0°
C62C35C36H36261.8°60.0°
C62C35C36H363173.0°179.9°
C37C35C62H62162.4°60.1°
C37C35C62H62262.9°60.0°
C37C35C62H623171.9°180.0°
C35C37H371H372122.3°120.1°
C35C37H371H373118.8°120.0°
C35C37H372H373125.3°120.0°
C37C35C36H361178.5°180.0°
C37C35C36H36256.2°60.0°
C37C35C36H36369.1°59.9°
C36C35C62H621176.5°179.9°
C36C35C62H62258.3°60.0°
C36C35C62H62367.0°60.0°
C36C35C37H37172.6°60.0°
C36C35C37H37252.7°60.0°
C36C35C37H373178.0°180.0°
C35C36H361H362127.3°119.9°
C35C36H361H363116.3°120.0°
C35C36H362H363125.2°119.9°
H621C62H622H623109.5°120.0°
H371C37H372H373109.4°119.9°
H361C36H362H363109.5°120.1°
C24C23C22H23180.0°180.0°
C24C23C22C210.6°0.1°
C24C23C22H22179.3°180.0°
C23C24C25C263.8°0.3°
C23C24C25H25176.2°180.0°
C25C24C23C221.7°0.0°
C25C24C23H23178.3°179.9°
C24C25C26H25180.0°179.7°
C24C25C26C27174.2°180.0°
C24C25C26C213.4°0.6°
C23C22C21H22180.0°179.9°
C23C22C21C260.9°0.3°
C23C22C21C20172.0°180.0°
H23C23C22C21179.3°179.9°
H23C23C22H220.7°0.0°
C22C21C26C251.1°0.6°
C22C21C26C27176.4°180.0°
C22C21C26C20172.9°179.7°
C22C21C20C1960.8°65.0°
C22C21C20C15130.5°115.0°
H22C22C21C26179.0°179.7°
H22C22C21C208.0°0.0°
C25C26C27C21177.6°179.5°
C25C26C27O2952.2°0.0°
C25C26C27O28125.0°180.0°
C25C26C21C20174.0°179.7°
H25C25C26C275.8°0.2°
H25C25C26C21176.6°179.7°
C26C27O29O28176.9°179.9°
C26C27O29H29180.0°180.0°
C27C26C21C203.5°0.3°
C21C26C27O29130.3°179.5°
C21C26C27O2852.6°0.6°
C26C21C20C19112.0°115.3°
C26C21C20C1556.6°64.7°
O28C27O29H293.1°0.0°
C21C20C19C15169.5°180.0°
C21C20C19C18173.3°180.0°
C21C20C19H196.8°0.1°
C21C20C15N16173.3°179.7°
C21C20C15C1318.1°0.0°
C20C19C18H19180.0°179.9°
C20C19C18C171.6°0.1°
C20C19C18H18178.4°180.0°
C19C20C15N164.7°0.3°
C19C20C15C13173.2°180.0°
C15C20C19C183.7°0.0°
C15C20C19H19176.3°179.9°
C20C15N16C173.6°0.5°
C20C15N16C13170.3°179.7°
C20C15C13O1437.4°0.1°
C20C15C13N7151.7°180.0°
C19C18C17H18180.0°180.0°
C19C18C17O44177.4°179.9°
C19C18C17N160.4°0.2°
H19C19C18C17178.4°180.0°
H19C19C18H181.6°0.1°
C18C17O44N16177.8°179.7°
C18C17O44C58179.3°180.0°
C18C17N16C151.3°0.5°
H18C18C17O442.6°0.0°
H18C18C17N16179.6°179.8°
C17O44C58H58154.7°180.0°
C17O44C58H582180.0°60.0°
C17O44C58H58354.7°60.0°
O44C17N16C15176.4°179.8°
N16C17O44C581.5°0.3°
C17N16C15C13173.9°179.7°
O44C58H581H582129.0°120.0°
O44C58H581H583115.5°120.0°
O44C58H582H583125.3°120.0°
H581C58H582H583109.5°120.0°
N16C15C13O14132.3°179.8°
N16C15C13N738.6°0.3°
C15C13O14N7170.7°179.9°
C15C13N7C1172.6°174.5°
C15C13N7HN77.4°5.5°
O14C13N7C11.8°5.6°
O14C13N7HN7178.2°174.4°
C13N7C1HN7180.0°180.0°
C13N7C1C630.3°37.4°
C13N7C1C2155.0°142.8°
N7C1C6C2174.7°179.8°
N7C1C6C5174.0°180.0°
N7C1C6H66.0°0.1°
N7C1C2C3174.3°179.7°
N7C1C2H25.8°0.3°
HN7N7C1C6149.7°142.5°
HN7N7C1C225.0°37.3°
C1C6C5H6180.0°179.9°
C1C6C5C41.4°0.0°
C1C6C5H5178.6°180.0°
C6C1C2C30.7°0.5°
C6C1C2H2179.3°179.9°
C2C1C6C50.7°0.2°
C2C1C6H6179.3°179.7°
C1C2C3C41.4°0.6°
C1C2C3H2180.0°179.4°
C1C2C3H3178.6°179.7°
C6C5C4H5180.0°180.0°
C6C5C4C8178.1°179.9°
C6C5C4C33.3°0.0°
H6C6C5C4178.7°180.0°
H6C6C5H51.4°0.0°
C5C4C8C3178.6°179.9°
C5C4C8N10167.4°149.9°
C5C4C8N912.4°29.9°
C5C4C8H8160.7°90.1°
C5C4C3C23.3°0.3°
C5C4C3H3176.6°179.9°
H5C5C4C81.9°0.1°
H5C5C4C3176.7°180.0°
C4C8N10N9179.8°120.0°
C4C8N10H89.4°119.9°
C4C8N9H812.7°119.9°
C4C8N10H10154.7°60.0°
C4C8N10H102180.0°173.8°
C4C8N9HN9154.7°66.2°
C4C8N9HN92180.0°180.0°
C8C4C3C2178.1°179.8°
C8C4C3H32.0°0.1°
C3C4C8N1014.0°29.9°
C3C4C8N9166.2°150.0°
C3C4C8H817.9°90.1°
C4C3C2H3180.0°179.7°
C4C3C2H2178.7°180.0°
N10C8N9H8167.6°120.0°
C8N10H101H102132.6°113.8°
N10C8N9HN91125.0°173.8°
N10C8N9HN920.2°60.0°
N9C8N10H101125.5°60.0°
N9C8N10H1020.2°53.8°
C8N9HN91HN92132.1°113.8°
H8C8N10H10145.3°179.9°
H8C8N10H102170.6°66.2°
H8C8N9HN9167.4°53.8°
H8C8N9HN92167.3°60.0°
H3C3C2H21.4°0.3°

246704

PDB entries from 2025-12-24

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