Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

ONM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CA7NA1sing1.46Å1.48Å
CA7HA71sing1.09Å1.11Å
CA7HA72sing1.09Å1.12Å
CA7HA73sing1.09Å1.11Å
NA1CA6sing1.39Å1.36Å
NA1HA1sing0.97Å1.02Å
CA6CA5doub1.39Å1.52ÅAromatic
CA6CA1sing1.40Å1.43ÅAromatic
CA5CA4sing1.38Å1.60ÅAromatic
CA5HA5sing1.08Å1.10Å
CA4CA3doub1.39Å1.44ÅAromatic
CA4HA4sing1.08Å1.10Å
CA3CA2sing1.38Å1.57ÅAromatic
CA3HA3sing1.08Å1.10Å
CA2CA1doub1.40Å1.42ÅAromatic
CA2HA2sing1.08Å1.10Å
CA1CAsing1.47Å1.56Å
CAOAdoub1.22Å1.46Å
CAO3'sing1.35Å1.38Å
O3'C3'sing1.45Å1.48Å
C3'C2'sing1.54Å1.52Å
C3'C4'sing1.54Å1.57Å
C3'H3'sing1.09Å1.12Å
C2'O2'sing1.43Å1.44Å
C2'C1'sing1.54Å1.51Å
C2'H1sing1.09Å1.11Å
O2'H2'sing0.97Å0.95Å
C4'C5'sing1.53Å1.56Å
C4'O4'sing1.45Å1.44Å
C4'H4'sing1.09Å1.12Å
C5'O5'sing1.43Å1.44Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.11Å
O5'PAsing1.61Å1.63Å
PAO3Adoub1.48Å1.62Å
PAO2Asing1.61Å1.48Å
PAO1Asing1.61Å1.58Å
O2AH2Asing0.97Å0.95Å
O1APBsing1.61Å1.60Å
PBO3Bdoub1.48Å1.62Å
PBO2Bsing1.61Å1.48Å
PBO1Bsing1.61Å1.51Å
O2BH2Bsing0.97Å0.95Å
O1BPGsing1.61Å1.55Å
PGO2Gdoub1.48Å1.60Å
PGO3Gsing1.61Å1.61Å
PGO1Gsing1.61Å1.47Å
O3GH3Gsing0.97Å0.95Å
O1GH1Gsing0.97Å0.95Å
O4'C1'sing1.44Å1.45Å
C1'N9sing1.47Å1.49Å
C1'H1'sing1.09Å1.12Å
N9C8sing1.36Å1.34ÅAromatic
N9C4sing1.37Å1.32ÅAromatic
C8N7doub1.30Å1.34ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.36Å1.33ÅAromatic
C5C4doub1.40Å1.40ÅAromatic
C5C6sing1.41Å1.42Å
C4N3sing1.34Å1.37Å
N3C2doub1.31Å1.36Å
C2N2sing1.37Å1.33Å
C2N1sing1.36Å1.42Å
N2HN21sing0.97Å1.02Å
N2HN22sing0.97Å1.02Å
N1C6sing1.35Å1.42Å
N1HN1sing0.97Å1.02Å
C6O6doub1.22Å1.23Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
NA1CA7HA71105.7°109.4°
NA1CA7HA72128.0°109.5°
NA1CA7HA73105.7°109.5°
CA7NA1CA6128.0°119.9°
CA7NA1HA1105.7°120.0°
HA71CA7HA72105.7°109.5°
HA71CA7HA73103.6°109.4°
HA72CA7HA73105.7°109.5°
CA6NA1HA1105.7°120.0°
NA1CA6CA5121.8°120.2°
NA1CA6CA1119.3°120.2°
CA5CA6CA1119.0°119.6°
CA6CA5CA4122.8°120.1°
CA6CA5HA5116.0°120.0°
CA6CA1CA2120.5°119.6°
CA6CA1CA123.3°120.2°
CA4CA5HA5121.2°119.9°
CA5CA4CA3114.0°120.4°
CA5CA4HA4127.7°119.8°
CA3CA4HA4118.3°119.8°
CA4CA3CA2120.9°120.4°
CA4CA3HA3115.1°119.8°
CA2CA3HA3124.1°119.8°
CA3CA2CA1122.9°119.9°
CA3CA2HA2123.7°120.0°
CA1CA2HA2113.4°120.1°
CA2CA1CA116.2°120.2°
CA1CAOA120.1°120.0°
CA1CAO3'120.4°120.0°
OACAO3'119.6°120.0°
CAO3'C3'125.7°120.0°
O3'C3'C2'106.7°110.5°
O3'C3'C4'118.0°110.5°
O3'C3'H3'103.4°110.4°
C2'C3'C4'101.1°104.2°
C2'C3'H3'119.7°110.6°
C3'C2'O2'113.1°110.5°
C3'C2'C1'101.3°104.1°
C3'C2'H1113.3°110.5°
C4'C3'H3'108.7°110.5°
C3'C4'C5'124.8°110.7°
C3'C4'O4'104.9°104.7°
C3'C4'H4'101.6°110.3°
O2'C2'C1'111.7°110.6°
O2'C2'H1103.1°110.5°
C2'O2'H2'113.2°106.8°
C1'C2'H1114.7°110.5°
C2'C1'O4'109.4°104.8°
C2'C1'N9115.4°110.4°
C2'C1'H1'106.5°110.4°
C5'C4'O4'107.8°110.3°
C5'C4'H4'98.4°110.3°
C4'C5'O5'120.3°109.5°
C4'C5'H5'1108.3°109.5°
C4'C5'H5'2108.3°109.5°
O4'C4'H4'120.7°110.4°
C4'O4'C1'107.3°105.4°
O5'C5'H5'1108.3°109.4°
O5'C5'H5'2108.3°109.4°
C5'O5'PA121.2°106.8°
H5'1C5'H5'2101.6°109.5°
O5'PAO3A99.9°109.5°
O5'PAO2A107.2°109.5°
O5'PAO1A103.8°109.5°
O3APAO2A113.3°109.5°
O3APAO1A106.5°109.5°
O2APAO1A123.1°109.4°
PAO2AH2A107.2°106.8°
PAO1APB119.1°106.8°
O1APBO3B105.6°109.5°
O1APBO2B113.3°109.5°
O1APBO1B113.8°109.5°
O3BPBO2B100.3°109.4°
O3BPBO1B102.3°109.5°
O2BPBO1B118.8°109.5°
PBO2BH2B113.3°106.8°
PBO1BPG104.9°106.8°
O1BPGO2G119.1°109.5°
O1BPGO3G123.4°109.5°
O1BPGO1G87.1°109.4°
O2GPGO3G117.4°109.5°
O2GPGO1G106.5°109.5°
O3GPGO1G75.0°109.5°
PGO3GH3G123.4°106.8°
PGO1GH1G87.1°106.8°
O4'C1'N9112.5°110.5°
O4'C1'H1'109.7°110.4°
N9C1'H1'102.9°110.3°
C1'N9C8131.1°126.2°
C1'N9C4121.1°126.2°
C8N9C4107.5°107.5°
N9C8N7109.9°109.8°
N9C8H8125.0°125.1°
N9C4C5107.6°106.1°
N9C4N3130.5°134.2°
N7C8H8125.1°125.1°
C8N7C5107.6°109.4°
N7C5C4107.3°107.3°
N7C5C6135.7°134.2°
C4C5C6116.9°118.6°
C5C4N3121.9°119.7°
C5C6N1120.7°118.4°
C5C6O6122.5°120.8°
C4N3C2122.6°121.1°
N3C2N2120.2°119.0°
N3C2N1118.6°121.9°
N2C2N1121.2°119.0°
C2N2HN21108.3°120.0°
C2N2HN22120.2°120.0°
C2N1C6119.4°120.3°
C2N1HN1120.0°119.8°
HN21N2HN22108.4°120.0°
C6N1HN1120.6°119.8°
N1C6O6116.8°120.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
NA1CA7HA71HA72138.1°120.0°
NA1CA7HA71HA73110.9°120.0°
NA1CA7HA72HA73125.3°120.1°
CA7NA1CA6HA1125.3°180.0°
CA7NA1CA6CA50.2°5.7°
CA7NA1CA6CA1179.7°174.0°
HA71CA7HA72HA73109.5°120.0°
HA71CA7NA1CA654.7°180.0°
HA71CA7NA1HA170.6°0.0°
HA72CA7NA1CA6180.0°60.0°
HA72CA7NA1HA154.7°119.9°
HA73CA7NA1CA654.7°60.1°
HA73CA7NA1HA1180.0°120.0°
NA1CA6CA5CA1179.9°179.7°
NA1CA6CA5CA4179.7°180.0°
NA1CA6CA5HA50.2°0.0°
NA1CA6CA1CA2179.8°179.7°
NA1CA6CA1CA0.0°0.3°
HA1NA1CA6CA5125.1°174.3°
HA1NA1CA6CA155.0°6.0°
CA6CA5CA4HA5180.0°180.0°
CA6CA5CA4CA30.1°0.0°
CA6CA5CA4HA4179.8°179.9°
CA5CA6CA1CA20.1°0.6°
CA5CA6CA1CA179.8°180.0°
CA1CA6CA5CA40.1°0.3°
CA1CA6CA5HA5179.9°179.7°
CA6CA1CA2CA30.0°0.6°
CA6CA1CA2CA179.8°179.4°
CA6CA1CA2HA2180.0°179.7°
CA6CA1CAOA45.7°5.2°
CA6CA1CAO3'135.2°174.7°
CA5CA4CA3HA4180.0°179.9°
CA5CA4CA3CA20.1°0.0°
CA5CA4CA3HA3179.9°180.0°
HA5CA5CA4CA3179.9°180.0°
HA5CA5CA4HA40.1°0.1°
CA4CA3CA2HA3180.0°180.0°
CA4CA3CA2CA10.1°0.3°
CA4CA3CA2HA2179.9°180.0°
HA4CA4CA3CA2179.9°179.9°
HA4CA4CA3HA30.1°0.1°
CA3CA2CA1HA2180.0°179.7°
CA3CA2CA1CA179.8°180.0°
HA3CA3CA2CA1179.9°179.7°
HA3CA3CA2HA20.1°0.0°
CA2CA1CAOA134.0°174.2°
CA2CA1CAO3'45.0°5.9°
HA2CA2CA1CA0.2°0.3°
CA1CAOAO3'179.0°179.9°
CA1CAO3'C3'170.9°180.0°
OACAO3'C3'8.1°0.1°
CAO3'C3'C2'176.7°93.3°
CAO3'C3'C4'70.5°152.0°
CAO3'C3'H3'49.6°29.4°
O3'C3'C2'C4'124.0°118.7°
O3'C3'C2'H3'116.7°122.6°
O3'C3'C4'H3'117.3°122.5°
O3'C3'C2'O2'33.0°0.1°
O3'C3'C2'C1'86.7°118.6°
O3'C3'C2'H1149.9°122.7°
O3'C3'C4'C5'157.6°98.6°
O3'C3'C4'O4'77.7°142.6°
O3'C3'C4'H4'48.8°23.8°
C2'C3'C4'H3'126.9°118.8°
C3'C2'O2'C1'113.6°114.7°
C3'C2'O2'H1122.8°122.6°
C3'C2'C1'H1122.4°118.6°
C3'C2'O2'H2'180.0°179.9°
C2'C3'C4'C5'86.5°142.7°
C2'C3'C4'O4'38.1°23.8°
C2'C3'C4'H4'164.6°94.9°
C3'C2'C1'O4'25.7°24.0°
C3'C2'C1'N9153.7°142.9°
C3'C2'C1'H1'92.8°94.9°
C4'C3'C2'O2'157.0°118.8°
C4'C3'C2'C1'37.2°0.0°
C4'C3'C2'H186.1°118.6°
C3'C4'C5'O4'123.4°115.4°
C3'C4'C5'H4'110.5°122.4°
C3'C4'O4'H4'113.6°118.7°
C3'C4'C5'O5'4.0°178.2°
C3'C4'C5'H5'1121.2°58.2°
C3'C4'C5'H5'2129.3°61.8°
C3'C4'O4'C1'22.7°40.4°
H3'C3'C2'O2'83.7°122.4°
H3'C3'C2'C1'156.5°118.8°
H3'C3'C2'H133.2°0.2°
H3'C3'C4'C5'40.4°23.9°
H3'C3'C4'O4'165.0°94.9°
H3'C3'C4'H4'68.5°146.3°
O2'C2'C1'H1116.9°122.6°
O2'C2'C1'O4'146.4°142.7°
O2'C2'C1'N985.6°98.4°
O2'C2'C1'H1'27.9°23.8°
C1'C2'O2'H2'66.5°65.4°
C2'C1'O4'C4'1.6°40.4°
C2'C1'O4'N9129.6°118.9°
C2'C1'O4'H1'116.4°118.8°
C2'C1'N9H1'115.5°122.2°
C2'C1'N9C869.4°95.0°
C2'C1'N9C4103.3°84.7°
H1C2'O2'H2'57.2°57.3°
H1C2'C1'O4'96.7°94.7°
H1C2'C1'N931.3°24.3°
H1C2'C1'H1'144.8°146.5°
C5'C4'O4'H4'111.6°122.2°
C4'C5'O5'H5'1125.3°120.0°
C4'C5'O5'H5'2125.3°120.0°
C4'C5'H5'1H5'2114.0°120.0°
C4'C5'O5'PA177.0°180.0°
C5'C4'O4'C1'112.1°159.4°
O4'C4'C5'O5'119.4°66.5°
O4'C4'C5'H5'1115.4°173.5°
O4'C4'C5'H5'25.9°53.5°
C4'O4'C1'N9131.2°159.3°
C4'O4'C1'H1'114.8°78.4°
H4'C4'C5'O5'114.5°55.7°
H4'C4'C5'H5'110.7°64.3°
H4'C4'C5'H5'2120.2°175.7°
H4'C4'O4'C1'136.3°78.4°
O5'C5'H5'1H5'2114.0°119.9°
C5'O5'PAO3A177.4°55.0°
C5'O5'PAO2A64.3°65.0°
C5'O5'PAO1A67.5°175.0°
H5'1C5'O5'PA57.7°59.9°
H5'2C5'O5'PA51.8°60.0°
O5'PAO3AO2A113.7°120.0°
O5'PAO3AO1A107.8°120.0°
O5'PAO2AO1A120.1°120.0°
O5'PAO2AH2A180.0°60.0°
O5'PAO1APB116.7°165.0°
O3APAO2AO1A130.6°120.0°
O3APAO2AH2A70.7°180.0°
O3APAO1APB138.3°45.0°
O2APAO1APB4.9°75.0°
O1APAO2AH2A59.9°60.0°
PAO1APBO3B35.2°45.0°
PAO1APBO2B73.6°74.9°
PAO1APBO1B146.6°165.0°
O1APBO3BO2B117.9°120.0°
O1APBO3BO1B119.4°120.0°
O1APBO2BO1B137.6°120.0°
O1APBO2BH2B180.0°60.0°
O1APBO1BPG68.4°160.0°
O3BPBO2BO1B110.4°120.0°
O3BPBO2BH2B67.9°180.0°
O3BPBO1BPG178.2°40.0°
O2BPBO1BPG69.0°80.0°
O1BPBO2BH2B42.4°60.0°
PBO1BPGO2G124.8°40.0°
PBO1BPGO3G58.0°80.1°
PBO1BPGO1G127.8°160.0°
O1BPGO2GO3G177.4°120.0°
O1BPGO2GO1G96.0°120.0°
O1BPGO3GO1G76.1°119.9°
O1BPGO3GH3G180.0°60.0°
O1BPGO1GH1G180.0°180.0°
O2GPGO3GO1G101.1°120.0°
O2GPGO3GH3G2.8°180.0°
O2GPGO1GH1G60.4°60.0°
O3GPGO1GH1G54.2°60.0°
O1GPGO3GH3G103.9°60.0°
O4'C1'N9H1'118.0°122.3°
O4'C1'N9C857.1°20.5°
O4'C1'N9C4130.2°159.9°
C1'N9C8C4173.5°179.7°
C1'N9C8N7175.8°180.0°
C1'N9C8H84.2°0.0°
C1'N9C4C5176.4°179.9°
C1'N9C4N34.4°0.7°
H1'C1'N9C8175.1°142.8°
H1'C1'N9C412.2°37.6°
N9C8N7H8180.0°180.0°
N9C8N7C51.6°0.0°
C8N9C4C52.1°0.4°
C8N9C4N3178.6°179.5°
C4N9C8N72.3°0.2°
C4N9C8H8177.7°179.8°
N9C4C5N71.2°0.3°
N9C4C5N3179.3°179.3°
N9C4C5C6179.3°179.8°
N9C4N3C2179.0°179.6°
C8N7C5C40.2°0.2°
C8N7C5C6179.1°180.0°
H8C8N7C5178.4°180.0°
N7C5C4C6179.5°179.9°
N7C5C4N3179.5°179.7°
N7C5C6N1179.5°180.0°
N7C5C6O60.4°0.1°
C5C4N3C20.1°0.5°
C4C5C6N10.2°0.2°
C4C5C6O6179.8°179.7°
C6C5C4N30.0°0.5°
C5C6N1C20.3°0.1°
C5C6N1O6179.9°179.9°
C5C6N1HN1179.7°180.0°
C4N3C2N2179.7°179.7°
C4N3C2N10.0°0.3°
N3C2N2N1179.7°180.0°
N3C2N2HN2154.7°180.0°
N3C2N2HN22180.0°0.0°
N3C2N1C60.2°0.0°
N3C2N1HN1179.8°180.0°
C2N2HN21HN22132.0°180.0°
N2C2N1C6179.9°180.0°
N2C2N1HN10.1°0.0°
N1C2N2HN21125.0°0.1°
N1C2N2HN220.3°180.0°
C2N1C6HN1180.0°180.0°
C2N1C6O6179.7°180.0°
HN1N1C6O60.3°0.1°

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon