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SummaryGeometryRelated PDB entries

ONC

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C03C04doub1.38Å1.39ÅAromatic
C03C02sing1.38Å1.39ÅAromatic
C04C05sing1.38Å1.36ÅAromatic
C01C02sing1.51Å1.49Å
C02C07doub1.38Å1.39ÅAromatic
C05C06doub1.38Å1.37ÅAromatic
C07C06sing1.38Å1.36ÅAromatic
C07C08sing1.51Å1.47Å
C08N09sing1.47Å1.47Å
O11C10doub1.22Å1.16Å
N09C10sing1.35Å1.44Å
N09C26sing1.38Å1.33Å
C10C12sing1.42Å1.45Å
C22C21doub1.38Å1.38ÅAromatic
C22C23sing1.38Å1.38ÅAromatic
C21C20sing1.38Å1.37ÅAromatic
C23C24doub1.38Å1.36ÅAromatic
C20C19doub1.38Å1.38ÅAromatic
C26N27doub1.31Å1.39ÅAromatic
C26N25sing1.36Å1.39ÅAromatic
C12C17sing1.51Å1.47Å
C12C13doub1.34Å1.36Å
N27C28sing1.34Å1.41ÅAromatic
C17N16sing1.47Å1.42Å
C24C19sing1.38Å1.37ÅAromatic
C19C18sing1.51Å1.51Å
N25C13sing1.38Å1.33Å
N25C29sing1.37Å1.44ÅAromatic
C13C14sing1.51Å1.45Å
N16C18sing1.47Å1.41Å
N16C15sing1.47Å1.37Å
C28C29doub1.34Å1.50ÅAromatic
C14C15sing1.53Å1.54Å
C01H1sing1.09Å1.10Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C03H4sing1.08Å1.08Å
C04H5sing1.08Å1.08Å
C05H6sing1.08Å1.08Å
C06H7sing1.08Å1.08Å
C08H8sing1.09Å1.10Å
C08H9sing1.09Å1.10Å
C14H10sing1.09Å1.10Å
C14H11sing1.09Å1.10Å
C15H12sing1.09Å1.10Å
C15H13sing1.09Å1.10Å
C17H14sing1.09Å1.10Å
C17H15sing1.09Å1.10Å
C18H16sing1.09Å1.10Å
C18H17sing1.09Å1.10Å
C20H18sing1.08Å1.08Å
C21H19sing1.08Å1.08Å
C22H20sing1.08Å1.08Å
C23H21sing1.08Å1.08Å
C24H22sing1.08Å1.08Å
C28H23sing1.08Å1.08Å
C29H24sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C04C03C02121.6°120.0°
C03C04C05118.6°120.0°
C04C03H4119.2°120.0°
C03C04H5120.7°120.0°
C03C02C01119.7°120.0°
C03C02C07118.8°120.0°
C02C03H4119.2°120.0°
C04C05C06119.7°120.0°
C05C04H5120.7°120.0°
C04C05H6120.1°120.0°
C01C02C07121.5°120.0°
C02C01H1109.5°109.5°
C02C01H2109.4°109.5°
C02C01H3109.5°109.5°
C02C07C06118.4°120.0°
C02C07C08122.0°120.0°
C05C06C07122.9°120.0°
C06C05H6120.1°120.0°
C05C06H7118.6°120.0°
C06C07C08119.6°120.0°
C07C06H7118.5°120.0°
C07C08N09121.9°109.5°
C07C08H8106.3°109.4°
C07C08H9106.3°109.5°
C08N09C10122.0°120.2°
C08N09C26122.4°120.1°
N09C08H8106.3°109.4°
N09C08H9106.3°109.5°
O11C10N09119.9°119.9°
O11C10C12120.9°119.9°
C10N09C26115.6°119.8°
N09C10C12119.2°120.2°
N09C26N27126.8°132.0°
N09C26N25125.2°119.8°
C10C12C17123.5°118.2°
C10C12C13119.6°119.5°
C21C22C23119.7°120.0°
C22C21C20120.9°120.0°
C22C21H19119.5°120.0°
C21C22H20120.1°120.0°
C22C23C24118.8°120.0°
C23C22H20120.2°120.0°
C22C23H21120.6°119.9°
C21C20C19119.6°120.0°
C21C20H18120.2°120.0°
C20C21H19119.5°120.0°
C23C24C19121.9°120.0°
C24C23H21120.6°120.0°
C23C24H22119.0°120.0°
C20C19C24119.0°120.0°
C20C19C18117.3°120.0°
C19C20H18120.2°120.0°
N27C26N25108.0°108.2°
C26N27C28110.1°109.4°
C26N25C13120.0°120.9°
C26N25C29111.4°107.2°
C17C12C13116.9°122.3°
C12C17N16117.5°110.7°
C12C17H14107.4°109.2°
C12C17H15107.4°109.2°
C12C13N25120.4°119.8°
C12C13C14119.9°122.0°
N27C28C29107.2°108.4°
N27C28H23126.4°125.8°
C17N16C18115.1°111.0°
C17N16C15110.7°110.0°
N16C17H14107.5°109.3°
N16C17H15107.4°109.2°
C24C19C18123.7°120.0°
C19C24H22119.0°120.0°
C19C18N16112.8°109.5°
C19C18H16108.6°109.4°
C19C18H17108.6°109.4°
C13N25C29128.6°131.9°
N25C13C14119.7°118.2°
N25C29C28103.4°106.9°
N25C29H24128.3°126.6°
C13C14C15117.9°110.1°
C13C14H10107.3°109.4°
C13C14H11107.3°109.4°
C18N16C15103.4°111.0°
N16C18H16108.6°109.5°
N16C18H17108.6°109.5°
N16C15C14112.1°108.3°
N16C15H12108.8°109.7°
N16C15H13108.8°109.7°
C29C28H23126.4°125.8°
C28C29H24128.3°126.6°
C15C14H10107.3°109.3°
C15C14H11107.3°109.4°
C14C15H12108.8°109.7°
C14C15H13108.8°109.7°
H1C01H2109.5°109.4°
H1C01H3109.5°109.5°
H2C01H3109.5°109.4°
H8C08H9109.5°109.4°
H10C14H11109.5°109.2°
H12C15H13109.5°109.7°
H14C17H15109.5°109.1°
H16C18H17109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C04C03C02H4180.0°179.9°
C03C04C05H5180.0°179.9°
C04C03C02C01179.3°180.0°
C04C03C02C070.5°0.3°
C03C04C05C060.4°0.0°
C03C04C05H6179.7°179.9°
C02C03C04C050.5°0.1°
C03C02C01C07179.8°179.7°
C03C02C07C060.4°0.5°
C03C02C07C08179.3°179.7°
C03C02C01H190.1°94.9°
C03C02C01H2149.9°25.1°
C03C02C01H329.9°145.0°
C02C03C04H5179.5°180.0°
C04C05C06H6180.0°179.9°
C04C05C06C070.3°0.2°
C05C04C03H4179.5°180.0°
C04C05C06H7179.7°179.9°
C01C02C07C06179.5°179.8°
C01C02C07C080.8°0.1°
C02C01H1H2120.0°120.0°
C02C01H1H3120.0°120.1°
C02C01H2H3120.0°120.0°
C01C02C03H40.7°0.1°
C02C07C06C050.3°0.5°
C02C07C06C08179.7°179.7°
C02C07C08N09173.2°176.7°
C07C02C01H190.1°84.8°
C07C02C01H229.9°155.2°
C07C02C01H3149.9°35.3°
C07C02C03H4179.5°179.8°
C02C07C06H7179.7°179.7°
C02C07C08H851.5°56.7°
C02C07C08H965.0°63.3°
C05C06C07H7180.0°179.8°
C05C06C07C08179.4°179.8°
C06C05C04H5179.6°180.0°
C06C07C08N097.1°3.6°
C07C06C05H6179.8°179.9°
C06C07C08H8128.8°123.5°
C06C07C08H9114.7°116.5°
C07C08N09H8121.7°120.0°
C07C08N09H9121.7°120.1°
C07C08N09C1079.2°89.1°
C07C08N09C26103.9°90.9°
C08C07C06H70.6°0.0°
C07C08H8H9114.4°120.0°
C08N09C10O112.3°0.2°
C08N09C10C26177.1°179.9°
C08N09C10C12178.0°179.9°
C08N09C26N272.2°0.1°
C08N09C26N25177.7°179.9°
N09C08H8H9114.4°120.0°
O11C10N09C12179.8°179.7°
O11C10N09C26179.4°179.9°
O11C10C12C170.7°0.6°
O11C10C12C13179.9°179.7°
C10N09C26N27179.3°179.9°
C10N09C26N250.7°0.1°
N09C10C12C17179.1°179.7°
N09C10C12C130.4°0.0°
C10N09C08H8159.1°30.9°
C10N09C08H942.5°150.8°
C26N09C10C120.9°0.2°
N09C26N27N25180.0°180.0°
N09C26N27C28179.9°180.0°
N09C26N25C130.1°0.1°
N09C26N25C29180.0°180.0°
C26N09C08H817.8°149.2°
C26N09C08H9134.4°29.2°
C10C12C17C13179.4°179.7°
C10C12C17N16151.9°162.7°
C10C12C13N250.4°0.3°
C10C12C13C14179.3°179.8°
C10C12C17H1486.9°76.9°
C10C12C17H1530.8°42.4°
C21C22C23H20180.0°180.0°
C22C21C20H19180.0°179.9°
C21C22C23C240.2°0.2°
C22C21C20C190.1°0.0°
C22C21C20H18179.9°180.0°
C21C22C23H21179.8°180.0°
C23C22C21C200.7°0.1°
C22C23C24H21180.0°179.8°
C22C23C24C190.8°0.5°
C23C22C21H19179.3°180.0°
C22C23C24H22179.2°180.0°
C21C20C19H18180.0°180.0°
C21C20C19C240.9°0.3°
C21C20C19C18179.7°180.0°
C20C21C22H20179.3°179.9°
C23C24C19C201.3°0.5°
C23C24C19H22180.0°179.5°
C23C24C19C18179.9°179.7°
C24C23C22H20179.8°179.8°
C20C19C24C18178.8°179.8°
C20C19C18N16122.2°90.0°
C20C19C18H161.7°150.0°
C20C19C18H17117.3°30.0°
C19C20C21H19179.9°180.0°
C20C19C24H22178.6°180.0°
N27C26N25C13179.9°179.9°
N27C26N25C290.0°0.0°
C26N27C28C290.1°0.0°
C26N27C28H23179.9°180.0°
C26N25C13C120.6°0.3°
N25C26N27C280.1°0.0°
C26N25C13C29179.9°179.9°
C26N25C13C14179.0°179.7°
C26N25C29C280.1°0.0°
C26N25C29H24179.9°180.0°
C12C17N16H14121.1°120.3°
C12C17N16H15121.2°120.3°
C17C12C13N25179.9°179.5°
C17C12C13C140.2°0.5°
C12C17N16C18172.5°175.3°
C12C17N16C1555.8°52.1°
C12C17H14H15116.4°119.4°
C13C12C17N1627.5°17.6°
C12C13N25C14179.7°180.0°
C12C13N25C29179.5°179.8°
C12C13C14C150.8°16.9°
C12C13C14H10120.4°103.3°
C12C13C14H11122.0°137.1°
C13C12C17H1493.6°102.8°
C13C12C17H15148.7°137.9°
N27C28C29N250.1°0.0°
N27C28C29H23180.0°180.0°
N27C28C29H24179.9°180.0°
C17N16C18C1988.4°66.1°
C17N16C18C15120.8°122.7°
C17N16C15C1453.5°70.2°
C17N16C15H1266.9°170.1°
C17N16C15H13173.9°49.5°
N16C17H14H15116.4°119.4°
C17N16C18H1632.1°53.9°
C17N16C18H17151.0°173.9°
C24C19C18N1659.0°90.2°
C24C19C18H16179.4°29.7°
C24C19C18H1761.6°149.7°
C24C19C20H18179.1°179.7°
C19C24C23H21179.2°179.7°
C19C18N16H16120.5°120.0°
C19C18N16H17120.5°120.0°
C19C18N16C15150.8°171.3°
C19C18H16H17118.5°120.0°
C18C19C20H180.3°0.0°
C18C19C24H220.1°0.2°
C13N25C29C28179.8°179.9°
N25C13C14C15179.5°163.1°
N25C13C14H1059.3°76.7°
N25C13C14H1158.3°42.9°
C13N25C29H240.2°0.1°
C29N25C13C140.9°0.2°
N25C29C28H24180.0°180.0°
N25C29C28H23179.9°180.0°
C13C14C15N1628.4°49.9°
C13C14C15H10121.2°120.2°
C13C14C15H11121.2°120.3°
C13C14H10H11116.2°119.7°
C13C14C15H1292.0°169.6°
C13C14C15H13148.8°69.8°
C18N16C15C14177.2°166.5°
C18N16C15H1256.9°46.8°
C18N16C15H1362.3°73.7°
C18N16C17H1451.4°55.0°
C18N16C17H1566.3°64.4°
N16C18H16H17118.5°120.1°
N16C15C14H12120.4°119.7°
N16C15C14H13120.4°119.7°
N16C15C14H1092.8°70.3°
N16C15C14H11149.6°170.2°
N16C15H12H13118.8°120.6°
C15N16C17H1465.3°68.3°
C15N16C17H15177.0°172.4°
C15N16C18H1688.7°68.8°
C15N16C18H1730.2°51.3°
C15C14H10H11116.2°119.6°
C14C15H12H13118.8°120.6°
H1C01H2H3120.0°120.0°
H4C03C04H50.5°0.1°
H5C04C05H60.3°0.1°
H6C05C06H70.3°0.0°
H10C14C15H12146.8°49.4°
H10C14C15H1327.6°170.0°
H11C14C15H1229.2°70.1°
H11C14C15H1390.0°50.5°
H18C20C21H190.1°0.0°
H19C21C22H200.7°0.0°
H20C22C23H210.2°0.0°
H21C23C24H220.8°0.2°
H23C28C29H240.1°0.0°

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PDB entries from 2024-07-17

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