Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

ONA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CA7NA1sing1.46Å1.49Å
CA7HA71sing1.09Å1.10Å
CA7HA72sing1.09Å1.10Å
CA7HA73sing1.09Å1.10Å
NA1CA6sing1.39Å1.37Å
NA1HA1sing0.97Å1.00Å
CA6CA5sing1.39Å1.59ÅAromatic
CA6CA1doub1.40Å1.43ÅAromatic
CA5CA4doub1.38Å1.59ÅAromatic
CA5HA5sing1.08Å1.08Å
CA4CA3sing1.39Å1.57ÅAromatic
CA4HA4sing1.08Å1.08Å
CA3CA2doub1.38Å1.56ÅAromatic
CA3HA3sing1.08Å1.08Å
CA2CA1sing1.40Å1.40ÅAromatic
CA2HA2sing1.08Å1.08Å
CA1CAsing1.47Å1.54Å
CAOAdoub1.22Å1.44Å
CAO3'sing1.35Å1.37Å
O3'C3'sing1.45Å1.48Å
C3'C2'sing1.55Å1.52Å
C3'C4'sing1.55Å1.53Å
C3'H3'sing1.09Å1.10Å
C2'O2'sing1.43Å1.43Å
C2'C1'sing1.55Å1.53Å
C2'H1sing1.09Å1.10Å
O2'H2'sing0.97Å0.95Å
C4'C5'sing1.53Å1.58Å
C4'O4'sing1.44Å1.48Å
C4'H4'sing1.09Å1.10Å
C5'O5'sing1.43Å1.28Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
O5'PAsing1.61Å1.63Å
PAO3Adoub1.48Å1.57Å
PAO2Asing1.61Å1.47Å
PAO1Asing1.61Å1.57Å
O2AH2Asing0.97Å0.95Å
O1APBsing1.61Å1.56Å
PBO3Bdoub1.48Å1.62Å
PBO2Bsing1.61Å1.53Å
PBO1Bsing1.61Å1.54Å
O2BH2Bsing0.97Å0.95Å
O1BPGsing1.61Å1.55Å
PGO3Gdoub1.48Å1.63Å
PGO1Gsing1.61Å1.62Å
PGO2Gsing1.61Å1.49Å
O1GH1Gsing0.97Å0.95Å
O2GH2Gsing0.97Å0.95Å
O4'C1'sing1.44Å1.46Å
C1'N9sing1.47Å1.51Å
C1'H1'sing1.09Å1.10Å
N9C8sing1.36Å1.35ÅAromatic
N9C4sing1.37Å1.33ÅAromatic
C8N7doub1.30Å1.34ÅAromatic
C8H8sing1.08Å1.08Å
N7C5sing1.35Å1.33ÅAromatic
C5C4sing1.41Å1.42ÅAromatic
C5C6doub1.40Å1.42ÅAromatic
C4N3doub1.33Å1.37ÅAromatic
N3C2sing1.32Å1.35ÅAromatic
C2N1doub1.32Å1.42ÅAromatic
C2H2sing1.08Å1.08Å
N1C6sing1.33Å1.44ÅAromatic
C6N6sing1.38Å1.33Å
N6HN61sing0.97Å1.00Å
N6HN62sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
NA1CA7HA71109.5°109.4°
NA1CA7HA72109.4°109.5°
NA1CA7HA73109.5°109.5°
CA7NA1CA6129.3°120.0°
CA7NA1HA1103.3°120.0°
HA71CA7HA72109.5°109.4°
HA71CA7HA73109.4°109.5°
HA72CA7HA73109.4°109.5°
CA6NA1HA1103.4°120.0°
NA1CA6CA5120.2°120.1°
NA1CA6CA1117.4°120.2°
CA5CA6CA1122.4°119.7°
CA6CA5CA4117.4°120.0°
CA6CA5HA5121.3°120.0°
CA6CA1CA2119.4°119.6°
CA6CA1CA124.9°120.2°
CA4CA5HA5121.3°120.0°
CA5CA4CA3116.1°120.5°
CA5CA4HA4121.9°119.8°
CA3CA4HA4121.9°119.8°
CA4CA3CA2115.7°120.3°
CA4CA3HA3122.2°119.8°
CA2CA3HA3122.1°119.9°
CA3CA2CA1126.8°119.9°
CA3CA2HA2116.6°120.0°
CA1CA2HA2116.6°120.1°
CA2CA1CA115.8°120.2°
CA1CAOA121.2°120.0°
CA1CAO3'115.1°120.0°
OACAO3'123.7°120.0°
CAO3'C3'125.9°117.0°
O3'C3'C2'107.3°110.5°
O3'C3'C4'113.0°110.5°
O3'C3'H3'106.2°110.5°
C2'C3'C4'100.4°104.1°
C2'C3'H3'117.7°110.5°
C3'C2'O2'111.1°110.5°
C3'C2'C1'101.9°104.0°
C3'C2'H1114.2°110.6°
C4'C3'H3'112.5°110.6°
C3'C4'C5'121.5°110.4°
C3'C4'O4'107.0°104.8°
C3'C4'H4'102.2°110.4°
O2'C2'C1'111.9°110.5°
O2'C2'H1104.6°110.5°
C2'O2'H2'109.5°114.0°
C1'C2'H1113.4°110.6°
C2'C1'O4'103.8°104.8°
C2'C1'N9114.1°110.3°
C2'C1'H1'111.3°110.4°
C5'C4'O4'107.4°110.4°
C5'C4'H4'101.7°110.4°
C4'C5'O5'125.0°109.5°
C4'C5'H5'1100.9°109.4°
C4'C5'H5'2104.6°109.5°
O4'C4'H4'117.7°110.4°
C4'O4'C1'107.4°105.3°
O5'C5'H5'1100.9°109.5°
O5'C5'H5'2104.6°109.5°
C5'O5'PA107.6°123.0°
H5'1C5'H5'2122.7°109.5°
O5'PAO3A97.6°109.5°
O5'PAO2A113.4°109.5°
O5'PAO1A94.2°109.5°
O3APAO2A116.4°109.5°
O3APAO1A117.7°109.5°
O2APAO1A113.8°109.5°
PAO2AH2A109.5°114.0°
PAO1APB126.8°134.0°
O1APBO3B95.9°109.5°
O1APBO2B125.6°109.5°
O1APBO1B90.9°109.5°
O3BPBO2B106.7°109.5°
O3BPBO1B108.6°109.4°
O2BPBO1B125.0°109.5°
PBO2BH2B109.5°114.0°
PBO1BPG113.4°134.0°
O1BPGO3G109.6°109.4°
O1BPGO1G103.2°109.5°
O1BPGO2G109.7°109.5°
O3GPGO1G112.2°109.5°
O3GPGO2G110.0°109.5°
O1GPGO2G111.9°109.5°
PGO1GH1G109.5°114.0°
PGO2GH2G109.5°114.0°
O4'C1'N9112.3°110.4°
O4'C1'H1'113.1°110.4°
N9C1'H1'102.5°110.4°
C1'N9C8124.3°126.2°
C1'N9C4127.7°126.3°
C8N9C4107.9°107.5°
N9C8N7110.1°109.9°
N9C8H8124.9°125.0°
N9C4C5106.3°106.0°
N9C4N3131.9°134.9°
N7C8H8125.0°125.0°
C8N7C5107.7°109.5°
N7C5C4108.1°107.1°
N7C5C6134.9°134.7°
C4C5C6117.0°118.2°
C5C4N3121.8°119.1°
C5C6N1119.7°118.5°
C5C6N6120.4°120.8°
C4N3C2123.4°120.7°
N3C2N1118.0°122.5°
N3C2H2121.0°118.8°
N1C2H2121.0°118.8°
C2N1C6120.2°121.2°
N1C6N6119.9°120.7°
C6N6HN61109.5°120.0°
C6N6HN62109.5°120.0°
HN61N6HN62109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
NA1CA7HA71HA72120.0°120.0°
NA1CA7HA71HA73120.0°120.0°
NA1CA7HA72HA73120.0°120.0°
CA7NA1CA6HA1120.0°180.0°
CA7NA1CA6CA50.1°5.7°
CA7NA1CA6CA1180.0°174.0°
HA71CA7HA72HA73120.0°120.0°
HA71CA7NA1CA616.6°60.0°
HA71CA7NA1HA1103.4°120.0°
HA72CA7NA1CA6136.6°60.0°
HA72CA7NA1HA116.6°120.0°
HA73CA7NA1CA6103.4°180.0°
HA73CA7NA1HA1136.6°0.0°
NA1CA6CA5CA1179.9°179.7°
NA1CA6CA5CA4171.6°180.0°
NA1CA6CA5HA58.4°0.0°
NA1CA6CA1CA2180.0°179.7°
NA1CA6CA1CA0.3°0.0°
HA1NA1CA6CA5120.1°174.3°
HA1NA1CA6CA160.1°6.0°
CA6CA5CA4HA5180.0°180.0°
CA6CA5CA4CA316.2°0.0°
CA6CA5CA4HA4163.7°179.9°
CA5CA6CA1CA20.1°0.6°
CA5CA6CA1CA179.8°179.7°
CA1CA6CA5CA48.3°0.3°
CA1CA6CA5HA5171.7°179.7°
CA6CA1CA2CA30.1°0.6°
CA6CA1CA2CA179.7°179.7°
CA6CA1CA2HA2179.9°179.7°
CA6CA1CAOA69.3°5.5°
CA6CA1CAO3'111.3°174.4°
CA5CA4CA3HA4180.0°179.9°
CA5CA4CA3CA216.1°0.0°
CA5CA4CA3HA3163.9°180.0°
HA5CA5CA4CA3163.8°180.0°
HA5CA5CA4HA416.2°0.1°
CA4CA3CA2HA3180.0°180.0°
CA4CA3CA2CA18.7°0.3°
CA4CA3CA2HA2171.3°180.0°
HA4CA4CA3CA2163.9°179.9°
HA4CA4CA3HA316.1°0.1°
CA3CA2CA1HA2180.0°179.7°
CA3CA2CA1CA179.7°179.7°
HA3CA3CA2CA1171.3°179.7°
HA3CA3CA2HA28.7°0.0°
CA2CA1CAOA110.4°174.2°
CA2CA1CAO3'68.9°5.9°
HA2CA2CA1CA0.3°0.0°
CA1CAOAO3'179.3°179.9°
CA1CAO3'C3'173.5°180.0°
OACAO3'C3'7.1°0.1°
CAO3'C3'C2'179.3°91.4°
CAO3'C3'C4'71.1°153.9°
CAO3'C3'H3'52.6°31.2°
O3'C3'C2'C4'118.2°118.6°
O3'C3'C2'H3'119.5°122.6°
O3'C3'C4'H3'120.1°122.7°
O3'C3'C2'O2'43.3°0.0°
O3'C3'C2'C1'76.0°118.6°
O3'C3'C2'H1161.3°122.6°
O3'C3'C4'C5'151.5°98.6°
O3'C3'C4'O4'84.9°142.6°
O3'C3'C4'H4'39.4°23.7°
C2'C3'C4'H3'125.9°118.7°
C3'C2'O2'C1'113.2°114.6°
C3'C2'O2'H1123.7°122.7°
C3'C2'C1'H1123.2°118.7°
C3'C2'O2'H2'166.1°180.0°
C2'C3'C4'C5'94.6°142.8°
C2'C3'C4'O4'29.1°23.9°
C2'C3'C4'H4'153.3°94.9°
C3'C2'C1'O4'41.3°24.0°
C3'C2'C1'N9163.9°142.8°
C3'C2'C1'H1'80.7°94.9°
C4'C3'C2'O2'161.5°118.6°
C4'C3'C2'C1'42.2°0.0°
C4'C3'C2'H180.5°118.7°
C3'C4'C5'O4'123.5°115.4°
C3'C4'C5'H4'112.3°122.3°
C3'C4'O4'H4'114.2°118.8°
C3'C4'C5'O5'11.7°175.0°
C3'C4'C5'H5'1123.5°55.0°
C3'C4'C5'H5'2108.3°65.0°
C3'C4'O4'C1'3.9°40.5°
H3'C3'C2'O2'76.2°122.6°
H3'C3'C2'C1'164.5°118.8°
H3'C3'C2'H141.8°0.0°
H3'C3'C4'C5'31.3°24.1°
H3'C3'C4'O4'155.0°94.7°
H3'C3'C4'H4'80.7°146.4°
O2'C2'C1'H1118.1°122.6°
O2'C2'C1'O4'160.0°142.7°
O2'C2'C1'N977.4°98.5°
O2'C2'C1'H1'38.1°23.7°
C1'C2'O2'H2'80.7°65.4°
C2'C1'O4'C4'23.0°40.5°
C2'C1'O4'N9123.8°118.8°
C2'C1'O4'H1'120.7°118.9°
C2'C1'N9H1'120.5°122.3°
C2'C1'N9C8124.5°95.0°
C2'C1'N9C454.7°84.7°
H1C2'O2'H2'42.5°57.3°
H1C2'C1'O4'81.9°94.7°
H1C2'C1'N940.7°24.1°
H1C2'C1'H1'156.2°146.4°
C5'C4'O4'H4'113.9°122.3°
C4'C5'O5'H5'1111.8°120.0°
C4'C5'O5'H5'2120.0°120.0°
C4'C5'H5'1H5'2115.3°120.0°
C4'C5'O5'PA167.3°180.0°
C5'C4'O4'C1'128.0°159.3°
O4'C4'C5'O5'135.2°69.6°
O4'C4'C5'H5'1113.0°170.4°
O4'C4'C5'H5'215.2°50.4°
C4'O4'C1'N9146.8°159.3°
C4'O4'C1'H1'97.7°78.4°
H4'C4'C5'O5'100.6°52.7°
H4'C4'C5'H5'111.2°67.3°
H4'C4'C5'H5'2139.4°172.7°
H4'C4'O4'C1'118.2°78.3°
O5'C5'H5'1H5'2115.4°120.0°
C5'O5'PAO3A163.8°55.0°
C5'O5'PAO2A40.7°65.0°
C5'O5'PAO1A77.5°175.0°
H5'1C5'O5'PA80.9°60.0°
H5'2C5'O5'PA47.3°60.0°
O5'PAO3AO2A120.9°120.0°
O5'PAO3AO1A98.8°120.0°
O5'PAO2AO1A106.1°120.0°
O5'PAO2AH2A106.8°60.0°
O5'PAO1APB166.0°165.0°
O3APAO2AO1A141.8°120.0°
O3APAO2AH2A141.1°180.0°
O3APAO1APB93.1°45.0°
O2APAO1APB48.1°75.0°
O1APAO2AH2A0.7°60.0°
PAO1APBO3B62.7°45.0°
PAO1APBO2B52.7°75.0°
PAO1APBO1B171.4°165.0°
O1APBO3BO2B130.0°120.1°
O1APBO3BO1B92.9°120.0°
O1APBO2BO1B121.7°120.0°
O1APBO2BH2B148.7°60.0°
O1APBO1BPG107.0°160.0°
O3BPBO2BO1B128.0°120.0°
O3BPBO2BH2B101.0°180.0°
O3BPBO1BPG156.5°40.0°
O2BPBO1BPG29.2°80.0°
O1BPBO2BH2B27.0°60.0°
PBO1BPGO3G38.5°45.0°
PBO1BPGO1G81.2°165.0°
PBO1BPGO2G159.3°75.0°
O1BPGO3GO1G114.1°120.0°
O1BPGO3GO2G120.7°120.0°
O1BPGO1GO2G117.9°120.0°
O1BPGO1GH1G129.9°180.0°
O1BPGO2GH2G86.3°60.0°
O3GPGO1GO2G124.1°120.0°
O3GPGO1GH1G112.1°60.0°
O3GPGO2GH2G34.3°180.0°
O1GPGO2GH2G159.7°60.0°
O2GPGO1GH1G12.0°60.0°
O4'C1'N9H1'121.7°122.4°
O4'C1'N9C8117.7°20.4°
O4'C1'N9C463.1°159.9°
C1'N9C8C4179.3°179.7°
C1'N9C8N7179.2°180.0°
C1'N9C8H80.8°0.0°
C1'N9C4C5179.2°179.8°
C1'N9C4N30.5°0.0°
H1'C1'N9C84.0°142.7°
H1'C1'N9C4175.2°37.6°
N9C8N7H8180.0°180.0°
N9C8N7C50.0°0.0°
C8N9C4C50.1°0.4°
C8N9C4N3179.8°179.8°
C4N9C8N70.1°0.3°
C4N9C8H8179.9°179.8°
N9C4C5N70.1°0.5°
N9C4C5N3179.8°179.8°
N9C4C5C6179.6°179.8°
N9C4N3C2179.7°180.0°
C8N7C5C40.0°0.3°
C8N7C5C6179.5°180.0°
H8C8N7C5180.0°179.9°
N7C5C4C6179.6°179.8°
N7C5C4N3179.8°179.7°
N7C5C6N1179.8°179.2°
N7C5C6N60.2°0.0°
C5C4N3C20.0°0.2°
C4C5C6N10.3°0.5°
C4C5C6N6179.7°179.7°
C6C5C4N30.2°0.0°
C5C6N1C20.2°0.7°
C5C6N1N6179.9°179.2°
C5C6N6HN61145.2°0.0°
C5C6N6HN6294.8°180.0°
C4N3C2N10.2°0.1°
C4N3C2H2179.8°180.0°
N3C2N1H2180.0°180.0°
N3C2N1C60.0°0.4°
C2N1C6N6179.9°179.9°
H2C2N1C6179.9°179.6°
N1C6N6HN6134.9°179.2°
N1C6N6HN6285.1°0.8°
C6N6HN61HN62120.0°180.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon